ID: uc008ybl.0
GENE: Cxcl1(0)
chr5:91320357-91320545+


(1)
AGO.mut 		(4)
AGO2.ip 		(2)
BRAIN 		(2)
CELL-LINE 		(1)
DCR.mut 		(5)
EMBRYO 		(7)
FIBROBLAST 		(1)
KIDNEY 		(14)
LIVER 		(11)
OTHER 		(9)
OTHER.mut 		(1)
PIWI.ip 		(1)
PIWI.mut 		(1)
SKIN 		(1)
SPLEEN 		(16)
TESTES 		(1)
UTERUS

Sense strand
GCTTCTCTGTGCAGCGCTGCTGCTGCTGGCCACCAGCCGCCTGGCCACAGGTAGGTCTCGCCACTGCCACTGGGGGAGGAGGGACCTCTGGTGAGCGCAGCCTCCCACAGTCCCGCTGACCAAGAGTCTTCTCCCATAGGGGCGCCTATCGCCAATGAGCTGCGCTGTCAGTGCCTGCAGACCATGGCT
.........................................................................(((((((((...(((((((.((((..((........))..)))).)))).))))))))))))......................................................
.......................................................................72.................................................................139................................................
SizePerfect hitTotal NormPerfect NormmjLiverKO2()
Liver Data. (Zcchc11 liver)		mjTestesWT1()
Testes Data. (testes)		mjLiverWT1()
Liver Data. (liver)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		mjLiverWT3()
Liver Data. (liver)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		mjTestesWT4()
Testes Data. (testes)		mjTestesWT3()
Testes Data. (testes)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		mjTestesWT2()
Testes Data. (testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)		GSM475281(GSM475281)
total RNA. (testes)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR065048(SRR065048)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR038744(GSM527279)
small RNA-Seq. (brain)
............................................................................AGGAGGGACCTCTGGTGAGCG............................................................................................211179.00179.0077.0032.0017.003.004.004.0011.003.004.002.0010.00-----2.001.004.00--------1.00--1.00----1.001.00--------------1.00---------
............................................................................AGGAGGGACCTCTGGTGAGCGA...........................................................................................22197.00179.0046.00-3.0012.006.00-4.002.008.005.00-1.00--1.002.001.00-----2.00--1.00----1.00---------1.00--1.00-----------------
...........................................................................GAGGAGGGACCTCTGGTGAGCG............................................................................................22168.0068.0049.0011.00-2.001.00--1.00-1.00-----1.00----------------------------------1.00-------1.00--
............................................................................AGGAGGGACCTCTGGTGAGCGT...........................................................................................22152.00179.0010.00-12.003.003.008.003.004.00-1.00-----------1.00--1.00--1.002.00--1.00------1.00-------1.00--------------
............................................................................AGGAGGGACCTCTGGTGAGC.............................................................................................20129.0029.00--6.002.006.00--8.00-1.00-----------1.00-1.00-----1.00-1.00-------------1.00----------1.00----
...........................................................................GAGGAGGGACCTCTGGTGAGCGT...........................................................................................2316.0068.00----2.003.00---1.00---------------------------------------------------
............................................................................AGGAGGGACCTCTGGTGAGCGAAT.........................................................................................2416.00179.00-----6.00-------------------------------------------------------
......................................................................TGGGGGAGGAGGGACCTCTGGTGAGCG............................................................................................2714.004.00-4.00-----------------------------------------------------------
...........................................................................GAGGAGGGACCTCTGGTGAGCGATT.........................................................................................2513.0068.00------2.00---------1.00--------------------------------------------
............................................................................AGGAGGGACCTCTGGTGAGCGAAA.........................................................................................2413.00179.00---2.00-----------1.00---------------------------------------------
...........................................................................GAGGAGGGACCTCTGGTGAGCGAAA.........................................................................................2513.0068.00--------3.00----------------------------------------------------
.............................................................................GGAGGGACCTCTGGTGAGCG............................................................................................2013.003.00---1.00--------2.00------------------------------------------------
............................................................................AGGAGGGACCTCTGGTGAGCGAA..........................................................................................2313.00179.00-----------------------2.00----------1.00--------------------------
............................................................................AGGAGGGACCTCTGGTGAGCGAT..........................................................................................2312.00179.00-----------------1.00------1.00------------------------------------
............................................................................AGGAGGGACCTCTGGTGAGCGCAC.........................................................................................242.000.00-------------------2.00-----------------------------------------
..................................................GTAGGTCTCGCCACTGCCACTGGGGGAGGAGGGACCTCTGGTGAGCGCAGCCTCCCACAGTCCCGCTGACCAAGAGTCTTCTCCCATAG..................................................8912.002.00--------------------2.00----------------------------------------
...........................................................................GAGGAGGGACCTCTGGTGAGC.............................................................................................2112.002.00----1.00----------1.00---------------------------------------------
.............................................................................GGAGGGACCTCTGGTGAGCGA...........................................................................................2112.003.00------------2.00------------------------------------------------
.............................................................................GGAGGGACCTCTGGTGAGCGT...........................................................................................2112.003.00------------2.00------------------------------------------------
..........................................................................................................................................................ATGAGCTGCGCTGTCAGTGCC..............2112.002.00-----------------2.00-------------------------------------------
............................................................................AGGAGGGACCTCTGGTGAG..............................................................................................1911.001.00-----------------------------------------------1.00-------------
............................................................................AGGAGGGACCTCTGGTGAGCGTT..........................................................................................2311.00179.00---1.00---------------------------------------------------------
.............................................................................GGAGGGACCTCTGGTGAG..............................................................................................1811.001.00------------1.00------------------------------------------------
............................................................................AGGAGGGACCTCTGGTGAGCGTAAA........................................................................................2511.00179.00-------------------------1.00-----------------------------------
.............................................................................GGAGGGACCTCTGGTGAGC.............................................................................................1911.001.00------------1.00------------------------------------------------
............................................................................AGGAGGGACCTCTGGTGAGCGAG..........................................................................................2311.00179.00----1.00--------------------------------------------------------
...........................................................................GAGGAGGGACCTCTGGTGAGCGAAT.........................................................................................2511.0068.00----------------------1.00--------------------------------------
............................................................................AGGAGGGACCTCTGGTGAGCGTGA.........................................................................................2411.00179.00---1.00---------------------------------------------------------
...........................................................................GAGGAGGGACCTCTGGTGAGTG............................................................................................221.000.001.00------------------------------------------------------------
.......................................................................................................................................................CCAATGAGCTGCGCTGTC....................1811.001.00-------------------1.00-----------------------------------------
............................................................................AGGAGGGACCTCTGGTGAGCGG...........................................................................................2211.00179.001.00------------------------------------------------------------
............................................................................AGGAGGGACCTCTGGTGAGAG............................................................................................2111.001.001.00------------------------------------------------------------
...........................................................................GAGGAGGGACCTCTGGTGAGCGA...........................................................................................2311.0068.00-------------------------------------------------------1.00-----
............................................................................AGGAGGGACCTCTGGTGAGCGAGA.........................................................................................2411.00179.00---------1.00---------------------------------------------------
............................................................................AGGAGGGACCTCTGGTGAGCGATAA........................................................................................2511.00179.00---------------------------------------1.00---------------------
............................................................................AGGAGGGACCTCTGGTGAGAGA...........................................................................................2211.001.001.00------------------------------------------------------------
............................................................................AGGAGGGACCTCTGGTGGGCG............................................................................................211.000.00--1.00----------------------------------------------------------
............................................................................AGGAGGGACCTCTGGTGAGCGAAGT........................................................................................2511.00179.00----1.00--------------------------------------------------------
..................................................GTAGGTCTCGCCACTGCCACTGGGGGAGGAGGGACCTCTGGTGAGCGCAGCCTCCCACAGTCCCGCTGACCAAGAGTCTTCTCCCATAGA.................................................9011.002.00--------------------1.00----------------------------------------
..........................................................CGCCACTGCCACTGGGGGA................................................................................................................1911.001.00-------------------------------------1.00-----------------------
............................................................................AGGAGGGACCTCTGGTGAGCAT...........................................................................................2211.0029.00-----------1.00-------------------------------------------------
..TTCTCTGTGCAGCGCTGCTGCTGCTGGCC..............................................................................................................................................................2911.001.00--------------------------1.00----------------------------------
...........................................................................GAGGAGGGACCTCTGGTGAGCGAAGA........................................................................................2611.0068.00---------1.00---------------------------------------------------
............................................................................AGGAGGGACCTCTGGTGAGCGC...........................................................................................2211.001.00-------1.00-----------------------------------------------------
....................................................................................................................TGACCAAGAGTCTTCTCCCATTT..................................................231.000.00----------------------------------------------------1.00--------

Antisense strand
GCTTCTCTGTGCAGCGCTGCTGCTGCTGGCCACCAGCCGCCTGGCCACAGGTAGGTCTCGCCACTGCCACTGGGGGAGGAGGGACCTCTGGTGAGCGCAGCCTCCCACAGTCCCGCTGACCAAGAGTCTTCTCCCATAGGGGCGCCTATCGCCAATGAGCTGCGCTGTCAGTGCCTGCAGACCATGGCT
.........................................................................(((((((((...(((((((.((((..((........))..)))).)))).))))))))))))......................................................
.......................................................................72.................................................................139................................................
SizePerfect hitTotal NormPerfect NormmjLiverKO2()
Liver Data. (Zcchc11 liver)		mjTestesWT1()
Testes Data. (testes)		mjLiverWT1()
Liver Data. (liver)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		mjLiverWT3()
Liver Data. (liver)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		mjTestesWT4()
Testes Data. (testes)		mjTestesWT3()
Testes Data. (testes)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		mjTestesWT2()
Testes Data. (testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)		GSM475281(GSM475281)
total RNA. (testes)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR065048(SRR065048)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR038744(GSM527279)
small RNA-Seq. (brain)
..............................................................................................................................................................GCTGCGCTGTCAGTGCCTGCAGACCA..... 2617.007.00-----------3.00-3.001.00----------------------------------------------
................................................................................................................CCGCTGACCAAGAGTCTTCTCCCA..................................................... 2413.003.00-----------2.00--1.00----------------------------------------------
......................................................................................................TCCCACAGTCCCGCTA....................................................................... 162.000.00-------------2.00-----------------------------------------------
..........................................................................................................ACAGTCCCGCTGACCAAGAGTCTTC.......................................................... 2512.002.00--------------1.00---------------------------------------1.00------
..............................................................................................................TCCCGCTGACCAAGAGTCTTCTCCCA..................................................... 2612.002.00-----------2.00-------------------------------------------------
...................................................................................................GCCTCCCACAGTCCCGCTGACCAAGA................................................................ 2611.001.00--------------1.00----------------------------------------------
...........................................GCCACAGGTAGGTCTCGCCA.............................................................................................................................. 2011.001.00------------------------------------------------1.00------------
...........................................GCCACAGGTAGGTCTCGCCACTGCCA........................................................................................................................ 2611.001.00-------------1.00-----------------------------------------------
.............................................................................................................GTCCCGCTGACCAAGAGTCTTCTCCCA..................................................... 2711.001.00-----------------------------------------------------------1.00-
.........................................................................................................CACAGTCCCGCTGACCAAGAGTCTT........................................................... 2511.001.00-------------------------------------------------1.00-----------
...................................................................................................GCCTCCCACAGTCCCGCTGACCAA.................................................................. 2411.001.00---------------------------------------------------------1.00---
...........................GGCCACCAGCCGCCTCGG................................................................................................................................................ 181.000.00------------------------------------------1.00------------------
........................................................................GGGGAGGAGGGACCTCTGGTGAGCGCA.......................................................................................... 2711.001.00--------------------------1.00----------------------------------
....................................................................................................CCTCCCACAGTCCCGCTGACCAA.................................................................. 2311.001.00-------------1.00-----------------------------------------------
.....................................................................................................CTCCCACAGTCCCGCTGACCAATA................................................................ 241.000.00-----------1.00-------------------------------------------------
..............CGCTGCTGCTGCTGGCCACCAGCCG...................................................................................................................................................... 2511.001.00---------------------------------1.00---------------------------
.........................................................TCGCCACTGCCACTGGGG.................................................................................................................. 1811.001.00-----------------------------1.00-------------------------------
...............................................CAGGTAGGTCTCGCCACT............................................................................................................................ 1811.001.00---------------------1.00---------------------------------------
................................CCAGCCGCCTGGCCACAGGTCG....................................................................................................................................... 221.000.00-------------------1.00-----------------------------------------
................................................................................................................CCGCTGACCAAGAGTCTTCTCCCATA................................................... 2611.001.00--------------1.00----------------------------------------------
................................CCAGCCGCCTGGCCACAGGTAG....................................................................................................................................... 2211.001.00-----------------------------------------------------1.00-------
.....................................CGCCTGGCCACAGGTAGG...................................................................................................................................... 1811.001.00--------------------------------1.00----------------------------
...............................................................................................................................................................CTGCGCTGTCAGTGCCTGCAGACCA..... 2511.001.00--------------------------------------------1.00----------------
......................................GCCTGGCCACAGGTAGGT..................................................................................................................................... 1820.500.50------------------------0.50------------------------------------
..................GCTGCTGCTGGCCACCA.......................................................................................................................................................... 1780.120.12------------------------------------------------------------0.12