ID: uc008wwz.19
GENE: Cad(20)
chr5:31370911-31371096+


(1)
AGO1.ip 		(7)
AGO2.ip 		(1)
AGO3.ip 		(2)
B-CELL 		(19)
BRAIN 		(4)
CELL-LINE 		(1)
DCR.mut 		(2)
DGCR8.mut 		(8)
EMBRYO 		(7)
ESC 		(2)
FIBROBLAST 		(2)
LIVER 		(1)
LYMPH 		(9)
OTHER 		(2)
OTHER.mut 		(1)
PANCREAS 		(3)
PIWI.ip 		(3)
SKIN 		(2)
SPLEEN 		(13)
TESTES 		(3)
TOTAL-RNA

Sense strand
ATACCATCGGTATCAGCCAGCCTCAGTGGCGAGAGCTCAGTGACCTTGAGGTGGGCTGGGGTCTGGCAGGAAGCCGCGGGGCGGATGTCGCTTGTGGGTGAGTGTGAGCACCCCACTGACCCTCCTGTCCCTGCAGTCTGCTCGCCAGTTCTGCCACACGGTCGGGTACCCCTGCGTAGTGCGCCC
..................................................((((((.((((((.((((....(((....)))...))))....(((((...(((....)))))))).))))))...))))..))....................................................
..................................................51...................................................................................136................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		mjTestesWT3()
Testes Data. (testes)		mjTestesWT1()
Testes Data. (testes)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR073954(GSM629280)
total RNA. (blood)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR206940(GSM723281)
other. (brain)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		mjTestesWT4()
Testes Data. (testes)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)		SRR073955(GSM629281)
total RNA. (blood)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)
..................................................................................................................ACTGACCCTCCTGTCCCTGCAG..................................................22152.0052.0020.006.00-3.00-4.00-3.00-1.00----3.001.00----2.002.00-----1.00-1.00----1.00--------------1.00--1.00-------1.00---1.00-----------
..................................................................................................................ACTGACCCTCCTGTCCCTGCAGT.................................................23139.0039.007.001.00-----2.004.001.001.002.003.00--2.002.001.00-2.00---2.00-1.00-1.002.00-1.00-----------------1.00------1.00---1.00--1.00-------------
..................................................................................................................ACTGACCCTCCTGTCCCTGCAGA.................................................23132.0052.008.009.00-3.00-1.00----1.001.00-1.00---1.00----1.00-1.00-1.00--------1.00------------------1.00--1.001.00-----------------
.................................................................................................................CACTGACCCTCCTGTCCCTGCAG..................................................2319.009.001.004.00----------------------1.001.00---------------1.00-----------------------1.00----------
.........................GTGGCGAGAGCTCAGTGACCTTGAG........................................................................................................................................2517.007.00----7.00-----------------------------------------------------------------------
..................................................................................................................ACTGACCCTCCTGTCCCTGC....................................................2014.004.001.00--2.00----------------------1.00-------------------------------------------------
.................................................................................................................CACTGACCCTCCTGTCCCTGCAGA.................................................2413.009.001.00----1.00---------------------------------------1.00------------------------------
..................................................GTGGGCTGGGGTCTGGCAGGAAG.................................................................................................................2313.003.00---------------------------------------------------1.00-1.00---------1.00------------
..................................................GTGGGCTGGGGTCTGGCAGGAAGCCGC.............................................................................................................2713.003.00-------------------------------1.00-----1.00--1.00-----------------------------------
..................................................................................................................ACTGACCCTCCTGTCCCTGCAAT.................................................2313.002.00------3.00---------------------------------------------------------------------
..................................................GTGGGCTGGGGTCTGGCAGGAAGCCGCGGGGCGGATGTCGCTTGTGGGTGAGTGTGAGCACCCCACTGACCCTCCTGTCCCTGCAGA.................................................8713.002.00--3.00-------------------------------------------------------------------------
..................................................................................................................ACTGACCCTCCTGTCCCTGCAGAA................................................2412.0052.002.00---------------------------------------------------------------------------
....................................................................................................................TGACCCTCCTGTCCCTGCAGT.................................................2112.002.00-----------------------------------------------1.00--1.00-------------------------
..................................................................................................................ACTGACCCTCCTGTCCCTGCA...................................................2112.002.002.00---------------------------------------------------------------------------
........................................................................................................................................................GCCACACGGTCGGGTACCCCTGCGT.........2512.002.00-------------1.00--------1.00-----------------------------------------------------
.................................................................................................................CACTGACCCTCCTGTCCCTGCAGT.................................................2412.002.00------------------------------------1.00-------------------1.00-------------------
..................................................GTGGGCTGGGGTCTGGCAGGAAGCCGCGGGGCGGATGTCGCTTGTGGGTGAGTGTGAGCACCCCACTGACCCTCCTGTCCCTGCAGAAAG..............................................9012.002.00--2.00-------------------------------------------------------------------------
..................................................GTGGGCTGGGGTCTGGCAGGAAGCCGCGGGGCGGATGTCGCTTGTGGGTGAGTGTGAGCACCCCACTGACCCTCCTGTCCCTGCAGAA................................................8812.002.00--2.00-------------------------------------------------------------------------
..................................................GTGGGCTGGGGTCTGGCAGGAAGCCGCGGGGCGGATGTCGCTTGTGGGTGAGTGTGAGCACCCCACTGACCCTCCTGTCCCTGCAG..................................................8612.002.00--2.00-------------------------------------------------------------------------
.................................................................................CGGATGTCGCTTGTGGGTGT.....................................................................................201.000.00--------------------------------------1.00-------------------------------------
..................................................................................................................ACTGACCCTCCTGTCCCTGCACT.................................................2311.002.001.00---------------------------------------------------------------------------
......................................................................................................................................................CTGCCACACGGTCGGGTAC.................1911.001.00------------------------------------------------------------------1.00---------
...........................................................................................................................................................ACACGGTCGGGTACCCCT.............1811.001.00------------------------------------------1.00---------------------------------
...........................................................................................................................................................ACACGGTCGGGTACCCC..............1711.001.00------1.00---------------------------------------------------------------------
.....................................................................................................................................................TCTGCCACACGGTCGGGTA..................1911.001.00------1.00---------------------------------------------------------------------
.........................................................................CCGCGGGGCGGATGTCGCTTGTGG.........................................................................................2411.001.00----------------------------------------------1.00-----------------------------
........................AGTGGCGAGAGCTCAGT.................................................................................................................................................1711.001.00----------1.00-----------------------------------------------------------------
...........................................................................................................................................................ACACGGTCGGGTACCCCTGCGT.........2211.001.00-----------1.00----------------------------------------------------------------
..................................................................................................................ACTGACCCTCCTGTCCCTGCAGAAT...............................................2511.0052.00---------1.00------------------------------------------------------------------
.....................................................................................................................................................TCTGCCACACGGTCGGGT...................1811.001.00----------1.00-----------------------------------------------------------------
.................................................GGTGGGCTGGGGTCTAGG.......................................................................................................................181.000.00-----------------1.00----------------------------------------------------------
..................................................GTGGGCTGGGGTCTGGCAGGAAGCCGCGGGGCGGATGTCGCTTGTGGGTGAGTGTGAGCACCCCACTGACCCTCCTGTCCCTGCAGAAA...............................................8911.002.00--1.00-------------------------------------------------------------------------
..................................................................................................................ACTGACCCTCCTGTCCCTGCAGCAT...............................................2511.0052.00---------1.00------------------------------------------------------------------
..................................................GTGGGCTGGGGTCTGGCAGGAAGCCGCGG...........................................................................................................2911.001.00-------------------------------------------------------------1.00--------------
..................................................................................................................ACTGACCCTCCTGTCCCTGCATT.................................................2311.002.001.00---------------------------------------------------------------------------
..................................................................................................................ACTGACCCTCCTGTCCCTGCAGAGA...............................................2511.0052.00-------------1.00--------------------------------------------------------------
..................................................................................................................ACTGACCCTCCTGTCCCTGCAGTAAT..............................................2611.0039.00--------1.00-------------------------------------------------------------------
..................................................................................................................ACTGACCCTCCTGTCCCTGCCGT.................................................2311.004.00-------------------------------------------1.00--------------------------------
...CCATCGGTATCAGCCAGCC....................................................................................................................................................................1911.001.00--------------------------------------------1.00-------------------------------
..................................................................................................................ACTGACCCTCCTGTCCCTGCAT..................................................2211.002.00------1.00---------------------------------------------------------------------
...............................................................................................................................................................GGTCGGGTACCCCTGCG..........1711.001.00----------------1.00-----------------------------------------------------------
.................................................................................................................CACTGACCCTCCTGTCCCTGCAGTAT...............................................2611.002.00-------------------------------------------------------------------1.00--------
..............................................................................................................CCCCACTGACCCTCCTGTCCCTGCAGAAA...............................................291.000.00---------------------------------1.00------------------------------------------
...................................................TGGGCTGGGGTCTGGACGC....................................................................................................................191.000.00------------------1.00---------------------------------------------------------
..ACCATCGGTATCAGCCAGC.....................................................................................................................................................................1911.001.00---------------------------------------1.00------------------------------------
..................................................GTGGGCTGGGGTCTGGCAGGAAGCCGCGGGGCGG......................................................................................................3411.001.00--1.00-------------------------------------------------------------------------
.........................................................................CCGCGGGGCGGAT....................................................................................................1320.500.50--------------------------------------------------------------------0.50-------
................................................................................GCGGATGTCGCTT.............................................................................................1350.400.40------------------0.20---------------------------------------------------0.20-----
..................................................................................................................ACTGACCCTCCTGTCC........................................................1640.250.25---------0.25------------------------------------------------------------------
...................................................TGGGCTGGGGTCTGGC.......................................................................................................................1680.120.12------------------------------------------------------------------------0.12---

Antisense strand
ATACCATCGGTATCAGCCAGCCTCAGTGGCGAGAGCTCAGTGACCTTGAGGTGGGCTGGGGTCTGGCAGGAAGCCGCGGGGCGGATGTCGCTTGTGGGTGAGTGTGAGCACCCCACTGACCCTCCTGTCCCTGCAGTCTGCTCGCCAGTTCTGCCACACGGTCGGGTACCCCTGCGTAGTGCGCCC
..................................................((((((.((((((.((((....(((....)))...))))....(((((...(((....)))))))).))))))...))))..))....................................................
..................................................51...................................................................................136................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		mjTestesWT3()
Testes Data. (testes)		mjTestesWT1()
Testes Data. (testes)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR029123(GSM416611)
NIH3T3. (cell line)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR073954(GSM629280)
total RNA. (blood)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR206940(GSM723281)
other. (brain)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		mjTestesWT4()
Testes Data. (testes)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)		SRR073955(GSM629281)
total RNA. (blood)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)
..............................................................................................................................GTCCCTGCAGTCTGCTCGCC........................................ 2011.001.00--------------------------------1.00-------------------------------------------
...........................................................................................................................................GCTCGCCAGTTCTGCCC.............................. 171.000.00------------------1.00---------------------------------------------------------
............................................................................................................................................CTCGCCAGTTCTGC................................ 1490.440.44---------------------------------------------------------------------0.22---0.110.11-
..............................................................................................................................................CGCCAGTTCTGCCAC............................. 1540.250.25-----------------------------0.25----------------------------------------------
.............................................................................................................................................TCGCCAGTTCTGCC............................... 1460.170.17-----------------------------------------------------------------------0.17----
.............................................................................................................ACCCCACTGACCCTC.............................................................. 15100.100.10---------------------------------------------------------------------------0.10