ID: uc008sii.18
GENE: Nol6(7)
chr4:41068111-41068293-


(6)
AGO2.ip 		(4)
B-CELL 		(14)
BRAIN 		(3)
CELL-LINE 		(2)
DCR.mut 		(1)
DGCR8.mut 		(7)
EMBRYO 		(9)
ESC 		(1)
FIBROBLAST 		(1)
KIDNEY 		(1)
LIVER 		(2)
LYMPH 		(2)
OTHER 		(1)
OTHER.ip 		(3)
OTHER.mut 		(2)
PIWI.ip 		(3)
PIWI.mut 		(7)
SPLEEN 		(21)
TESTES

Sense strand
ATGGCGTGGCACTTCTGAAGGTTTGGCTGAGGCAGCGGGAACTGGACAAGGTGAGTTGTGGGTGGCCTGGTTTCCTCGCCTCTTTGTGGGAAGGGTTGCTCCTGAGCTCAGTCCAGTCATGCTTCTCTTTCAGGGCCTGGGTGGATTTAACGGATTCATCATCTCCATGCTGGTTGCCTTCCT
...................................................((((((..(((..((((...((((.(((......)))))))))))..)))...)))))).........................................................................
..................................................51...............................................................116.................................................................
SizePerfect hitTotal NormPerfect NormSRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR073954(GSM629280)
total RNA. (blood)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		mjTestesWT2()
Testes Data. (testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR059771(GSM562833)
CD4_control. (spleen)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		mjTestesWT3()
Testes Data. (testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR059768(GSM562830)
Treg_control. (spleen)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR037901(GSM510437)
testes_rep2. (testes)		SRR037903(GSM510439)
testes_rep4. (testes)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)
.........................................................................................GAAGGGTTGCTCCTGAGCTCAGT.......................................................................23118.0018.00-----2.001.001.00-1.002.00--1.00------1.00--2.001.00------------------1.00---1.001.001.00-------1.00---1.00----------
.........................................................................................GAAGGGTTGCTCCTGAGCTCA.........................................................................2116.006.00---------------3.00--2.00-----------------------------------1.00-----------------
.................................AGCGGGAACTGGACAAG.....................................................................................................................................1715.005.00---------2.00-3.00------------------------------------------------------------
..................................................GTGAGTTGTGGGTGGCCTGGTTTC.............................................................................................................2415.005.00----1.00---------------1.00---------1.00------1.00--------------------------1.00-------
..................................................GTGAGTTGTGGGTGGCCTGGTTTCC............................................................................................................2514.004.00------------1.00-------------------------1.00------------1.00-----------1.00--------
.......................TGGCTGAGGCAGCGGGAACTG...........................................................................................................................................2113.003.00-3.00----------------------------------------------------------------------
................................CAGCGGGAACTGGACAAG.....................................................................................................................................1813.003.00----------------------1.00------1.00----------------1.00-------------------------
......................TTGGCTGAGGCAGCGGGAACAA...........................................................................................................................................223.000.003.00-----------------------------------------------------------------------
.........................................................................................GAAGGGTTGCTCCTGAGCTCAGTCC.....................................................................2513.003.00--------------2.00------------------1.00--------------------------------------
................................................................GCCTGGTTTCCTCGCCTCTTTGTGGGA............................................................................................2713.003.00-3.00----------------------------------------------------------------------
.........................................................................................GAAGGGTTGCTCCTGAGCTCAGTCT.....................................................................253.000.00------1.00-----------------------------------1.00--------------------------1.00--
....................GTTTGGCTGAGGCAGCGGGAACTGGA.........................................................................................................................................2612.002.00---2.00--------------------------------------------------------------------
................GAAGGTTTGGCTGAGGCAGCGGGAACT............................................................................................................................................2712.002.002.00-----------------------------------------------------------------------
..................................................GTGAGTTGTGGGTGGCCTGGTTT..............................................................................................................2312.002.00----1.00---------------------------------------------------1.00---------------
..................AGGTTTGGCTGAGGCAGCGGGAAC.............................................................................................................................................2412.002.00--2.00---------------------------------------------------------------------
.....................................................................................................................................................ACGGATTCATCATCTCCATGCTGG..........2412.002.00-----2.00------------------------------------------------------------------
........GCACTTCTGAAGGTTTGGCTGAGGCAGCGGGA...............................................................................................................................................3212.002.00-------------------2.00----------------------------------------------------
............................................................................................................CAGTCCAGTCATGCTTCTCTTTCAG..................................................2512.002.00-----------------------------------------------------------1.001.00-----------
.......GGCACTTCTGAAGGTTTGGCTGAGGCAGCGGGA...............................................................................................................................................3312.002.00--------------------------2.00---------------------------------------------
...............................................................................................................TCCAGTCATGCTTCTCTTTCAG..................................................2212.002.00----------------------------2.00-------------------------------------------
.......................TGGCTGAGGCAGCGGGAAC.............................................................................................................................................1912.002.00-------------1.001.00---------------------------------------------------------
......................TTGGCTGAGGCAGCGGGAACTT...........................................................................................................................................222.000.002.00-----------------------------------------------------------------------
...........CTTCTGAAGGTTTGGCTGAGGCAGCGG.................................................................................................................................................2711.001.00---1.00--------------------------------------------------------------------
................GAAGGTTTGGCTGAGGCAGCGGGAA..............................................................................................................................................2511.001.00----------------------1.00-------------------------------------------------
...............TGAAGGTTTGGCTGAGGCAGCGGGAA..............................................................................................................................................2611.001.00--1.00---------------------------------------------------------------------
................GAAGGTTTGGCTGAGGCAGCGGG................................................................................................................................................2311.001.00------------1.00-----------------------------------------------------------
..................................................GTGAGTTGTGGGTGGCCTGGTTTTT............................................................................................................2511.002.00-------------------------1.00----------------------------------------------
..................................................GTGAGTTGTGGGTGGCCTGGTAA..............................................................................................................231.000.00-----------------------------------------1.00------------------------------
....................GTTTGGCTGAGGCAGCGGGAACTGGAC........................................................................................................................................2711.001.00----------------------------------------------------1.00-------------------
....................................................................................................................................................AACGGATTCATCATCTCCATGCTGGTTGCC.....3011.001.00--------------------------------------------------------------1.00---------
.......................................................................................................................................................GGATTCATCATCTCCAT...............1711.001.00-------------1.00----------------------------------------------------------
...............TGAAGGTTTGGCTGAGGCAGCGGGACATC...........................................................................................................................................2911.001.00--1.00---------------------------------------------------------------------
...............TGAAGGTTTGGCTGAGGCAGCGGGA...............................................................................................................................................2511.001.00---1.00--------------------------------------------------------------------
....................................................................................................................................GGGCCTGGGTGGATTTAAC................................1911.001.00--------------------------------1.00---------------------------------------
................................................................................................................CCAGTCATGCTTCTCTTTCAG..................................................2111.001.00--------------------------------------------------------------------1.00---
.............TCTGAAGGTTTGGCTGAGGCAGCGG.................................................................................................................................................2511.001.00----------------------------------------1.00-------------------------------
..................................................GTGAGTTGTGGGTGGCCTGGTTTCACA..........................................................................................................2711.005.00------1.00-----------------------------------------------------------------
..................................GCGGGAACTGGACAAGGGCCT................................................................................................................................2111.001.00-------------------------------------------------------1.00----------------
............TTCTGAAGGTTTGGCTGAGGCAGCG..................................................................................................................................................2511.001.00---1.00--------------------------------------------------------------------
................................................................................................................................TTCAGGGCCTGGGTGGGAGA...................................201.000.00-------------------------------------------------------------------1.00----
..................................................GTGAGTTGTGGGTGGCCTGGTTTCCAAAA........................................................................................................2911.004.00------1.00-----------------------------------------------------------------
.........................................................................................GAAGGGTTGCTCCTGAGCTCTGT.......................................................................231.000.00------------1.00-----------------------------------------------------------
..................................GCGGGAACTGGACAAGG....................................................................................................................................1711.001.00---------------------------------------------1.00--------------------------
..................................................GTGAGTTGTGGGTGGCCT...................................................................................................................1821.001.00-----------------------------0.50-----------------------------------------0.50
................GAAGGTTTGGCTGAGGCAGCGGGAATT............................................................................................................................................2711.001.001.00-----------------------------------------------------------------------
.........................................................................................GAAGGGTTGCTCCTGAGCTCCGT.......................................................................231.000.00----------1.00-------------------------------------------------------------
............TTCTGAAGGTTTGGCTGA.........................................................................................................................................................1811.001.00-----------------------------------1.00------------------------------------
...............TGAAGGTTTGGCTGAGGCA.....................................................................................................................................................1911.001.00------------------------1.00-----------------------------------------------
..................................................GTGAGTTGTGGGTGGCCTGGTTTTAT...........................................................................................................2611.002.00----1.00-------------------------------------------------------------------
............TTCTGAAGGTTTGGCTGAGGCAGCGG.................................................................................................................................................2611.001.00-------1.00----------------------------------------------------------------
.............TCTGAAGGTTTGGCTGAGGCAGCGGGTT..............................................................................................................................................281.000.00-------------------------1.00----------------------------------------------
..................................................GTGAGTTGTGGGTGGCCTGGTTAG.............................................................................................................241.000.00--------------------------------------------------1.00---------------------
..............CTGAAGGTTTGGCTGAGGC......................................................................................................................................................1911.001.00-----------------1.00------------------------------------------------------
..................................................GTGAGTTGTGGGTGGCCTGGTTA..............................................................................................................231.000.00----1.00-------------------------------------------------------------------
................GAAGGTTTGGCTGAGGCAGCGGGAACTG...........................................................................................................................................2811.001.00-------1.00----------------------------------------------------------------
...............TGAAGGTTTGGCTGAGGCAGCGGG................................................................................................................................................2411.001.00--1.00---------------------------------------------------------------------
.......................TGGCTGAGGCAGCGGGAACTGGACAAG.....................................................................................................................................2711.001.00-----------------1.00------------------------------------------------------
..................................................GTGAGTTGTGGGTGGCCTC..................................................................................................................1920.501.00----------------------------------------------------------------------0.50-
....................................................................................................................................GGGCCTGGGTGGATT....................................1550.200.20-------0.20----------------------------------------------------------------
...................................................................................................................................................TAACGGATTCATC.......................1350.200.20--------0.20---------------------------------------------------------------

Antisense strand
ATGGCGTGGCACTTCTGAAGGTTTGGCTGAGGCAGCGGGAACTGGACAAGGTGAGTTGTGGGTGGCCTGGTTTCCTCGCCTCTTTGTGGGAAGGGTTGCTCCTGAGCTCAGTCCAGTCATGCTTCTCTTTCAGGGCCTGGGTGGATTTAACGGATTCATCATCTCCATGCTGGTTGCCTTCCT
...................................................((((((..(((..((((...((((.(((......)))))))))))..)))...)))))).........................................................................
..................................................51...............................................................116.................................................................
SizePerfect hitTotal NormPerfect NormSRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR073954(GSM629280)
total RNA. (blood)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		mjTestesWT2()
Testes Data. (testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR059771(GSM562833)
CD4_control. (spleen)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		mjTestesWT3()
Testes Data. (testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR059768(GSM562830)
Treg_control. (spleen)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR037901(GSM510437)
testes_rep2. (testes)		SRR037903(GSM510439)
testes_rep4. (testes)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)
......................................................................................................................................................................ATGCTGGTTGCCTTCCGCA 198.000.00--------2.00-------1.00----1.00-----1.00---1.00----1.00--1.00--------------------------------
......................................................................................................................................................................ATGCTGGTTGCCTTCCG 172.000.00--------1.00-------------------------1.00-------------------------------------
....................................................................................................................................GGGCCTGGGTGGATTACCA................................ 1951.000.00---------------------------1.00--------------------------------------------
......................................................................................................................................................................ATGCTGGTTGCCTTCCGCC 191.000.00--------------------------------------------1.00---------------------------
..............................................................................................................GTCCAGTCATGCTTCTCTTTCA................................................... 2211.001.00-----------------------------------------------------------------1.00------
......................................................................................................................................................................ATGCTGGTTGCCTTCCGAA 191.000.00----------------1.00-------------------------------------------------------
.........................................................................................................GCTCAGTCCAGTCATA.............................................................. 161.000.00------------------------------------------------------------------1.00-----
......................................................................................................................................................................ATGCTGGTTGCCTTCCGC 181.000.00---------------------1.00--------------------------------------------------
....................................................................................................................................................................CCATGCTGGTTGCCTGAAC 191.000.00----------------------------------------------------------1.00-------------
.........................................................GTGGGTGGCCTGGTTGTT............................................................................................................ 181.000.00-----------------------------------------------------1.00------------------