ID: uc008qig.11
GENE: Sema6c(12)
chr3:94974013-94974289+


(12)
AGO2.ip 		(21)
BRAIN 		(1)
DCR.mut 		(1)
DGCR8.mut 		(11)
EMBRYO 		(3)
ESC 		(3)
LIVER 		(5)
OTHER 		(7)
OTHER.mut 		(4)
PIWI.ip 		(2)
PIWI.mut 		(2)
SPLEEN 		(19)
TESTES 		(2)
TOTAL-RNA

Sense strand
CCTGCTGTGCCACCCGCCACCCATCAACCGCTCCTCACTCTGACTAGCAGGTAATCACGCCTCCTGCCCTCGCCAAGCCCTTCTTTTTCTTGTGTGGTCCATGAGGCGAATCCCACTGGGGTGAGGGCCTATGAAGCAGTAGGATGGGAGGCAGGGCATCTCGGTGCTCCTGGGAGTGCTCAAGCTTCATTAGACAAGCTGTCCTCACCTGAAGCCTGTCGCTCCAGGGCCCTGCTGACCCAGGTAGCTGTGGACGGAATGGCTGGTCCCCACAGAA
............................................................................................................................................................................((((((..((.((((((...(((.....)))......)))))).)).))))))....................................................
.....................................................................................................................................................................166..........................................................227................................................
SizePerfect hitTotal NormPerfect NormSRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR059773(GSM562835)
CD4_Dicer. (spleen)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		GSM475281(GSM475281)
total RNA. (testes)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)
..............................................................................................................................................................................................................ACCTGAAGCCTGTCGCTCCAGT.................................................22130.004.005.005.002.00-3.004.00-1.001.00-1.00--1.001.001.00----------------------1.00-1.001.00--------1.00-------------1.00-
...............................................................................................................................................................................................................CCTGAAGCCTGTCGCTCCAGT.................................................2110.000.002.001.002.001.00---------------------1.00------------------1.00-----------1.00------1.00--
..........................................................................................................................................................................TGGGAGTGCTCAAGCTTCATTAG....................................................................................2318.008.00---2.001.00--------------------------1.00-----1.00-1.00--1.00-----------------1.00-----
..............................................................................................................................................................................................................ACCTGAAGCCTGTCGCTCCA...................................................2015.005.00----------2.00-------------1.00-----------------------1.00-----1.00-----------
..............................................................................................................................................................................................................ACCTGAAGCCTGTCGCTCCAG..................................................2114.004.00--1.002.00------------------------------------------------1.00-------------
..............................................................................................................................................................................................................ACCTGAAGCCTGTCGCTCCAGA.................................................2214.004.00-2.00------------------------1.00--------------------------1.00------------
..........................................................................................................................................................................TGGGAGTGCTCAAGCTTCATT......................................................................................2113.003.00-1.00--1.00-----------------------------1.00-------------------------------
..........................................................................................................................................................................TGGGAGTGCTCAAGCTTCATTA.....................................................................................2213.003.00--3.00---------------------------------------------------------------
................................CCTCACTCTGACTAGCAGG..................................................................................................................................................................................................................................1912.002.00----------------2.00-------------------------------------------------
..........................................................................................................................................................................TGGGAGTGCTCAAGCTTCATTAGT...................................................................................2412.008.001.00----------------------------1.00------------------------------------
..............................................................................................................................................................................................................ACCTGAAGCCTGTCGCTC.....................................................1812.002.00--------1.00-----1.00---------------------------------------------------
........................................................................................................................................................................................................................................TGCTGACCCAGGTAGCTGTGGACGG....................2512.002.00----------------------------------------------1.00----1.00--------------
...............................................................................................................................................................................................................CCTGAAGCCTGTCGCTCCAGA.................................................212.000.00------1.00--------1.00--------------------------------------------------
.................................CTCACTCTGACTAGCAG...................................................................................................................................................................................................................................1712.002.00---------------------------------------------------------1.001.00-------
.............................................................................................................................................................................................................................................ACCCAGGTAGCTGTGGACGGAATGGC..............2612.002.00----------------------------1.00----------------1.00--------------------
..........................................................................................................................................................................TGGGAGTGCTCAAGCTTCAT.......................................................................................2012.002.00--------------------1.00-----------1.00---------------------------------
..............................................................................................................................................................................................................ACCTGAAGCCTGTCGCTCCAT..................................................2111.005.00--1.00---------------------------------------------------------------
...............................................................................................................................................................................................................CCTGAAGCCTGTCGCTCCAGTAA...............................................231.000.00--------1.00---------------------------------------------------------
...........................................................................................................................................................................................................................................TGACCCAGGTAGCTGTGGACGGAA..................2411.001.00-------------------------------------------------------------1.00----
........................CAACCGCTCCTCACTCTGACTAGCAG...................................................................................................................................................................................................................................2611.001.00--------------------------------------------------------------1.00---
.........................................................................................................................................................................CTGGGAGTGCTCAAGCTTCATT......................................................................................2211.001.00--------------------1.00---------------------------------------------
.....................................................ATCACGCCTCCTGCCAAC..............................................................................................................................................................................................................181.000.00-------------------------------------------------------1.00----------
...............................................................................................................................................................................................................CCTGAAGCCTGTCGCTCCAGTAT...............................................231.000.001.00-----------------------------------------------------------------
................................................................................................................................................................................................................CTGAAGCCTGTCGCTCCAGT.................................................201.000.00-------1.00----------------------------------------------------------
........................................................................................................................................................................CCTGGGAGTGCTCAAGCTTCATT......................................................................................2311.001.00---1.00--------------------------------------------------------------
..............................................................................................................................................................TCTCGGTGCTCCTGGGAGTGCTCAAGCTTCATTAGACAAGCTGTCCTCACCTGAAGCCTGTCGCTCCAG..................................................6911.001.00-------------------------------------------1.00----------------------
...................................................................................................................................TGAAGCAGTAGGATGCACG...............................................................................................................................191.000.00------------1.00-----------------------------------------------------
..............................................................................................................................................................................................................................TCCAGGGCCCTGCTGTGCG....................................191.000.00---------1.00--------------------------------------------------------
.................................................................................................................................................................................................................................................AGGTAGCTGTGGACGCGG..................181.000.00------------------1.00-----------------------------------------------
.................................................................................................................................................................................................................................................AGGTAGCTGTGGACGGAATGG...............2111.001.00------1.00-----------------------------------------------------------
........................................................................................................................................................................CCTGGGAGTGCTCAAGCTTCAT.......................................................................................2211.001.00-----------------------------------------------------------1.00------
...................................................................................................................................TGAAGCAGTAGGATGGGAGGTTTT..........................................................................................................................241.000.00-----------------------1.00------------------------------------------
........................................................................................................................................................................................................GTCCTCACCTGAAGCACCA..........................................................191.000.00------------------1.00-----------------------------------------------
..............................................................................................................................................................................................................ACCTGAAGCCTGTCGCTCCAA..................................................2111.005.00---------------------1.00--------------------------------------------
..............................................................................................................................................................................................................ACCTGAAGCCTGTCGCTCCATT.................................................2211.005.00-------1.00----------------------------------------------------------
...........................................................................................................................................................................................................CTCACCTGAAGCCTGTTTTC......................................................201.000.00-----------------------------------1.00------------------------------
...................................................................................................................................TGAAGCAGTAGGATGTGTC...............................................................................................................................191.000.00------------------------------------1.00-----------------------------
....................................................................................................................................................................................................................................................................GGCTGGTCCCCACAGAAT181.000.00-----------1.00------------------------------------------------------
..............................................................................................................................................................................................................ACCTGAAGCCTGTCGCTCCAGTAA...............................................2411.004.001.00-----------------------------------------------------------------
...................................................................................................................................TGAAGCAGTAGGATGTAT................................................................................................................................181.000.00---------1.00--------------------------------------------------------
...........................................................................................................................................................................................................................................TGACCCAGGTAGCTGTGGACGGAATGGC..............2811.001.00-----------------------------------------------1.00------------------
..........................ACCGCTCCTCACTCTGACTAGCAGGGCCC..............................................................................................................................................................................................................................291.000.00------------------------------1.00-----------------------------------
...................................................................................................................................TGAAGCAGTAGGATGTCT................................................................................................................................181.000.00---------1.00--------------------------------------------------------
...................................................................................................................................TGAAGCAGTAGGATGTTTG...............................................................................................................................191.000.00----------------------1.00-------------------------------------------
........................................................................................................................................................................................................................................TGCTGACCCAGGTAGCTGTGGACGGA...................2611.001.00---------------------1.00--------------------------------------------
..............................................................................................................................................................................................................ACCTGAAGCCTGTCGCTCC....................................................1911.001.00-------------------------------------------------1.00----------------
...............................TCCTCACTCTGACTAGCAGGT.................................................................................................................................................................................................................................2111.001.00------1.00-----------------------------------------------------------
...............................................................................................................................................................................................................CCTGAAGCCTGTCGCTC.....................................................1720.500.50-----------------------------------------------------------------0.50

Antisense strand
CCTGCTGTGCCACCCGCCACCCATCAACCGCTCCTCACTCTGACTAGCAGGTAATCACGCCTCCTGCCCTCGCCAAGCCCTTCTTTTTCTTGTGTGGTCCATGAGGCGAATCCCACTGGGGTGAGGGCCTATGAAGCAGTAGGATGGGAGGCAGGGCATCTCGGTGCTCCTGGGAGTGCTCAAGCTTCATTAGACAAGCTGTCCTCACCTGAAGCCTGTCGCTCCAGGGCCCTGCTGACCCAGGTAGCTGTGGACGGAATGGCTGGTCCCCACAGAA
............................................................................................................................................................................((((((..((.((((((...(((.....)))......)))))).)).))))))....................................................
.....................................................................................................................................................................166..........................................................227................................................
SizePerfect hitTotal NormPerfect NormSRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR059773(GSM562835)
CD4_Dicer. (spleen)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		GSM475281(GSM475281)
total RNA. (testes)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)
................................................................................................................................................................................................GACAAGCTGTCCTCACCA................................................................... 182.000.00-------------------2.00----------------------------------------------
.......................................................................................................................................................................................................................................CTGCTGACCCAGGTATCTA........................... 191.000.00-----------1.00------------------------------------------------------
....................................................................................................................................................................................................................................GCCCTGCTGACCCAGGTA............................... 181.000.00-----------------1.00------------------------------------------------
...........................................................................................................................................................................................................................CGCTCCAGGGCCCTGCGTA....................................... 191.000.00-----------1.00------------------------------------------------------
....................................................................................................................................................................................................................AGCCTGTCGCTCCAG.................................................. 1511.001.00----------------------1.00-------------------------------------------
..............................................................................CCTTCTTTTTCTTGTGTGGTCCATGA............................................................................................................................................................................. 2611.001.00---------------------------------1.00--------------------------------
........................................................ACGCCTCCTGCCCTCCTG........................................................................................................................................................................................................... 181.000.00---------------------------1.00--------------------------------------
....................................................................................................................................................................................................................................GCCCTGCTGACCCAGGTAA.............................. 191.000.00-----------------1.00------------------------------------------------
.........CCACCCGCCACCCATAGT.......................................................................................................................................................................................................................................................... 181.000.00------------1.00-----------------------------------------------------
....CTGTGCCACCCGCCAGAG............................................................................................................................................................................................................................................................... 181.000.00-------------1.00----------------------------------------------------
.......................................................................................................................................................................................................................CTGTCGCTCCAGGGC............................................... 1530.330.33------------0.33-----------------------------------------------------