ID: uc008pvo.1
GENE: Robld3(1)
chr3:88354658-88354907-


(1)
AGO.mut 		(4)
AGO2.ip 		(7)
B-CELL 		(10)
BRAIN 		(7)
EMBRYO 		(2)
ESC 		(1)
KIDNEY 		(2)
LIVER 		(1)
LUNG 		(3)
LYMPH 		(10)
OTHER 		(4)
OTHER.mut 		(2)
PIWI.ip 		(1)
PIWI.mut 		(1)
SKIN 		(5)
SPLEEN 		(1)
TDRD1.ip 		(12)
TESTES 		(1)
TOTAL-RNA 		(1)
UTERUS

Sense strand
CTTGGTTAGCACATGGCTCAGCTGAGGCTGGAATCCAGTTTCAGACCCCCATGTCTTAAATGCTGGGCAGAGCTCCTAGCTGAACTTCCTGCTCTGCTAAGCTTGGGAGACAATGTCACTAGGACCAGAGGAACCCTGGGGAAGGCAGGAACTAAGGATGTCAAGCAGAATGCCCCAAAGTATCATGTCCTTCCCACCAGGAGGGCCGTGTAGCCATTACGAGGGTGGCCAACCTTCTGCTATGTATGTA
.......................................................................................................................................((((((((((((.(((((..((...((.....))...))....))).)).)).)))))))..)))..................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR060845(GSM561991)
total RNA. (brain)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR525243(SRA056111/SRX170319)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR073954(GSM629280)
total RNA. (blood)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		mjTestesWT3()
Testes Data. (testes)		SRR037909(GSM510446)
newborn_rep2. (total RNA)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		mjTestesKO8()
Testes Data. (Zcchc11 testes)
........................................................................................................................................TGGGGAAGGCAGGAACTAAGG.............................................................................................21117.0017.00-3.00-------1.001.00-1.00-----1.001.001.00-1.00-------------------1.001.001.00--1.00---1.00--1.00--1.00-----
..........................................................................................................................................................................................................................ACGAGGGTGGCCAACCTTCT............2018.008.006.00-------------1.00-------------------------1.00----------------------
........................................................................................................................................TGGGGAAGGCAGGAACTAAG..............................................................................................2018.008.00-3.001.00--------------------1.001.00-1.00----------------------------1.00-------
.......................................................................................................................................CTGGGGAAGGCAGGAACTAAGG.............................................................................................2215.005.00-1.00---1.00--1.00-----------------------------1.00---------------------1.00--
................................................................................................................................................................................AAAGTATCATGTCCTTCCCACCAGT.................................................255.000.00---2.00--------------1.00------------------1.00---------------------1.00---
..........................................................................................................................................................................................................................ACGAGGGTGGCCAACCTTCTGCT.........2314.004.003.00-------1.00------------------------------------------------------
........................................................................................................................................TGGGGAAGGCAGGAACTAAGA.............................................................................................2113.008.00-------1.00---2.00---------------------------------------------------
........................................................................................................................................TGGGGAAGGCAGGAACTAAGGA............................................................................................2213.003.00----------------1.00---------------1.00-----------------------1.00------
.......................................................................................................................................CTGGGGAAGGCAGGAACT.................................................................................................1812.002.00------2.00--------------------------------------------------------
........................................................................................................................................TGGGGAAGGCAGGAACTAAGGAA...........................................................................................2312.003.00---------2.00-----------------------------------------------------
..........................................................................................................................................................................................................GGGCCGTGTAGCCATTACGAGGGT........................2412.002.002.00--------------------------------------------------------------
.......................................................................................................................TAGGACCAGAGGAACCCTGGGGAAGGCAGGAACTAAGGATGTCAAGCAGAATGCCCCAAAGTATCATGTCCTTCCCACCAGAAA...............................................842.000.00----2.00----------------------------------------------------------
...................................................................................................................................................................................................................AGCCATTACGAGGGTGGCCAACCT...............2412.002.001.00--1.00-----------------------------------------------------------
.......................................................................................................................................CTGGGGAAGGCAGGAACTAAGGAC...........................................................................................241.000.00----------1.00----------------------------------------------------
................................................................................................................................................................................AAAGTATCATGTCCTTCCCACC....................................................2211.001.00--1.00------------------------------------------------------------
.................................................................................................................................................CAGGAACTAAGGATGAAGC......................................................................................191.000.00----------------1.00----------------------------------------------
...................................................................................................................................................................................................ACCAGGAGGGCCGTGTGG.....................................181.000.00-------1.00-------------------------------------------------------
................................................................................................................................................................................AAAGTATCATGTCCTTCCCAC.....................................................2111.001.00--1.00------------------------------------------------------------
.......................................................................................................................................CTGGGGAAGGCAGGAACTAAGGATGTCA.......................................................................................2811.001.00----------------------------------------------1.00----------------
.........................................................................................................................................................................................................AGGGCCGTGTAGCCATTACGAGG..........................2311.001.00------------------------------1.00--------------------------------
......................................................................................................TTGGGAGACAATGTCAG...................................................................................................................................171.000.00----------------------------------------------------------1.00----
.......................................................................................................................................CTGGGGAAGGCAGGAACTA................................................................................................1911.001.00---------------1.00-----------------------------------------------
.......................................................................................................................................CTGGGGAAGGCAGGAAC..................................................................................................1721.001.00-------------------------1.00-------------------------------------
......................................................................................................................................CCTGGGGAAGGCAGGAACTAAGGAT...........................................................................................2511.001.00-----------------1.00---------------------------------------------
................................................................................................................................................................................AAAGTATCATGTCCTTCCCACCAT..................................................241.000.00--1.00------------------------------------------------------------
........................................................................................................................................TGGGGAAGGCAGGAACTAAGGT............................................................................................2211.0017.00------------1.00--------------------------------------------------
..............................................................................................TGCTAAGCTTGGGAGACAATGTCACT..................................................................................................................................2611.001.00---------------------------------1.00-----------------------------
...................................................................................................................................................................................................ACCAGGAGGGCCGTGTGGGT...................................201.000.00-----1.00---------------------------------------------------------
..............................................................................GCTGAACTTCCTGCTCTGC.........................................................................................................................................................1911.001.00------------------------------------1.00--------------------------
......TAGCACATGGCTCAGCTGAGGCTGG...........................................................................................................................................................................................................................2511.001.00-----------------------------------------------------1.00---------
........................................................................................CTGCTCTGCTAAGCTTGGGAGACAATGT......................................................................................................................................2811.001.00-----------------------------1.00---------------------------------
........................................................................................................................................TGGGGAAGGCAGGAACTAATG.............................................................................................2111.001.00-----------------------------------1.00---------------------------
......................................................................................................................................................................AGAATGCCCCAAAGTATCATGTCCTTCC........................................................2811.001.00-------------------------------1.00-------------------------------
......................................................................................................................................CCTGGGGAAGGCAGGAACTAAGGA............................................................................................2411.001.00----------1.00----------------------------------------------------
.......................................................................................................................................................................................................................ATTACGAGGGTGGCCAACC................1911.001.00--------1.00------------------------------------------------------
.......................................................................................................................................CTGGGGAAGGCAGGAACTAAGGATG..........................................................................................2511.001.00----------------------------------1.00----------------------------
........................................................................................................................................TGGGGAAGGCAGGAACTAAGGATGT.........................................................................................2511.001.00------------------------------------------------1.00--------------
.............TGGCTCAGCTGAGGCTGCTCT........................................................................................................................................................................................................................211.000.00--------------------------------------------------1.00------------
..........................................................................................................................................GGGAAGGCAGGAACTAAGGATT..........................................................................................221.000.00-1.00-------------------------------------------------------------
...................................................................................................................................................GGAACTAAGGATGTCAAGCAGAATGCCC...........................................................................2811.001.00----------------------------------------------------1.00----------
........................................................................................................................................TGGGGAAGGCAGGAACTAA...............................................................................................1911.001.00---------------------------1.00-----------------------------------
.......................................................................................................................................CTGGGGAAGGCAGGAACTAAG..............................................................................................2111.001.00-----1.00---------------------------------------------------------
...................................................................................................................................................................................................................AGCCATTACGAGGGTGGCCAACCTT..............2511.001.00--------------1.00------------------------------------------------
........................................................................................................................................TGGGGAAGGCAGGAACTAAA..............................................................................................2011.001.00-------------1.00-------------------------------------------------
..................................................................................................................................................AGGAACTAAGGATGTCAAGCAGA.................................................................................2311.001.00-----------------------------------------1.00---------------------
.......................................................................................................................................CTGGGGAAGGCAGGAACTAATGT............................................................................................231.000.00----------------------------1.00----------------------------------
......................................................................................................................................CCTGGGGAAGGCAGGAACTAAGG.............................................................................................2311.001.00---------------------1.00-----------------------------------------
..............................................................................................................................AGAGGAACCCTGGGGAAGGCAGGAACTAAGGATGTCAAGCAGAATGCCCCAAAGTATCATGTCCTTCCCACCAG..................................................7411.001.00----1.00----------------------------------------------------------
........................................................................................................................................TGGGGAAGGCAGGAACTAAGGAAA..........................................................................................2411.003.00-------------1.00-------------------------------------------------
.......................................................................................................................TAGGACCAGAGGAACC...................................................................................................................1620.500.50-------------------------------------------------------------0.50-
.....................................................................................................................................................................................................................................CAACCTTCTGCTATGT.....1630.330.33-------------------0.33-------------------------------------------

Antisense strand
CTTGGTTAGCACATGGCTCAGCTGAGGCTGGAATCCAGTTTCAGACCCCCATGTCTTAAATGCTGGGCAGAGCTCCTAGCTGAACTTCCTGCTCTGCTAAGCTTGGGAGACAATGTCACTAGGACCAGAGGAACCCTGGGGAAGGCAGGAACTAAGGATGTCAAGCAGAATGCCCCAAAGTATCATGTCCTTCCCACCAGGAGGGCCGTGTAGCCATTACGAGGGTGGCCAACCTTCTGCTATGTATGTA
.......................................................................................................................................((((((((((((.(((((..((...((.....))...))....))).)).)).)))))))..)))..................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR060845(GSM561991)
total RNA. (brain)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR525243(SRA056111/SRX170319)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR073954(GSM629280)
total RNA. (blood)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		mjTestesWT3()
Testes Data. (testes)		SRR037909(GSM510446)
newborn_rep2. (total RNA)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		mjTestesKO8()
Testes Data. (Zcchc11 testes)
........................................................................................................GGGAGACAATGTCACTAGGACCAGA......................................................................................................................... 2511.001.00-------------------------------------------------1.00-------------
..............................................................................................................................................................................CCAAAGTATCATGTCCTTCCCACCAGGA................................................ 2811.001.00---------------------------------------1.00-----------------------
.....................................................................................................................................................................................................................................CAACCTTCTGCTATGCTGG.. 191.000.00-------1.00-------------------------------------------------------
...................................................................................ACTTCCTGCTCTGCTACT..................................................................................................................................................... 181.000.00------1.00--------------------------------------------------------
.....................................................................................................................................................................................................................................CAACCTTCTGCTATGCT.... 171.000.00---------------1.00-----------------------------------------------
................................................CCATGTCTTAAATGCTGGGCAGAGCTCCT............................................................................................................................................................................. 2911.001.00-----------------1.00---------------------------------------------
..............................................................................................................................................................................................................................GGGTGGCCAACCTTCGGG.......... 181.000.00---------------------------------------------1.00-----------------
..................................................................................................................................................................................AGTATCATGTCCTTCCC....................................................... 1730.330.33--------------------------------------------------------------0.33