ID: uc008omb.4
GENE: Zgpat(5)
chr2:181114345-181114528+


(5)
AGO2.ip 		(4)
B-CELL 		(11)
BRAIN 		(3)
CELL-LINE 		(1)
DCR.mut 		(2)
DGCR8.mut 		(10)
EMBRYO 		(8)
ESC 		(2)
FIBROBLAST 		(2)
HEART 		(1)
LIVER 		(3)
LYMPH 		(11)
OTHER 		(1)
OTHER.mut 		(2)
PANCREAS 		(3)
PIWI.ip 		(4)
SPLEEN 		(7)
TESTES

Sense strand
GGGCATTGGCTCCAAACTCCTCGTCAAGATGGGCTATGAGTTTGGCAAGGGTGAGTGCCTGCTGCCCTGAGTTGAGAGGGAGTCCTTAACACAGCTCAAGGTCTAGCAGGTAGCACAGCCTCTGTCTTTCTCAGGTTTGGGCCGGCATGCAGAAGGCCGGGTGGAGCCCATCCATGCTGTAGTG
..................................................(((..(((((((((((.(((((((.((((....))))....))))))).)))..)))))))).)))....................................................................
..................................................51.....................................................................122............................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR206941(GSM723282)
other. (brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR095853(SRX039174)
sequencing of miRNA from wild type and diseas. (heart)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR037919(GSM510457)
e12p5_rep1. (embryo)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)
...............................................................................................TCAAGGTCTAGCAGGTAGCACAG..................................................................23118.0018.00-3.001.001.001.00---1.00--------1.00-1.001.00---1.00-1.00------1.00-------------1.00--------1.00--1.00-1.00--1.00---
...............................................................................................TCAAGGTCTAGCAGGTAGCACAGT.................................................................24118.0018.00--2.002.00--3.00------1.00--2.00--1.00--1.00---1.001.00----1.00-----------1.00---------------1.00----1.00--
...............................................................................................TCAAGGTCTAGCAGGTAGCACAGC.................................................................24116.0016.00-5.002.002.001.002.00--1.00---------------1.00------------1.00--------------1.00---------------
...............................................................................................TCAAGGTCTAGCAGGTAGCACAGA.................................................................2418.0018.001.00--2.00---1.002.00-1.00---------1.00-----------------------------------------------
...............................................................................................TCAAGGTCTAGCAGGTAGCACA...................................................................2215.005.001.00--------------------------1.00---1.00--------1.00---------------------1.00-----
..................................................GTGAGTGCCTGCTGCCCTGAGTT...............................................................................................................2315.005.003.00---------1.00-------------------------1.00-------------------------------
..........................................................................................ACAGCTCAAGGTCTAGCAGGTAG.......................................................................2314.004.002.00-----------2.00-------------------------------------------------------
...............................................................................................TCAAGGTCTAGCAGGTAGCAC....................................................................2114.004.00-----1.00---------1.00-1.00----------------------------------------1.00---------
...............................................................................................TCAAGGTCTAGCAGGTAGCA.....................................................................2014.004.00----2.00-----------------------1.00-----1.00---------------------------------
..................................................GTGAGTGCCTGCTGCCCTGAGTTGAGAGGGAGTCCTTAACACAGCTCAAGGTCTAGCAGGTAGCACAGCCTCTGTCTTT.......................................................7913.003.00---------3.00----------------------------------------------------------
.............................................................................................................GTAGCACAGCCTCTGTCTTTCTCAG..................................................2513.003.00--------------3.00-----------------------------------------------------
...............................................................................................TCAAGGTCTAGCAGGTAG.......................................................................1813.003.002.00-----------1.00-------------------------------------------------------
..................................................GTGAGTGCCTGCTGCCCTGAGT................................................................................................................2213.003.001.00------1.00---------------------------1.00--------------------------------
...............................................................................................TCAAGGTCTAGCAGGTAGCACAGCT................................................................2512.0016.00-------2.00------------------------------------------------------------
..........................................................................................ACAGCTCAAGGTCTAGCAGGTAGC......................................................................2412.002.00-----1.00-1.00------------------------------------------------------------
...............................................................................................TCAAGGTCTAGCAGGTAGA......................................................................1912.003.001.00------------------------------------------------------------------1.00
..............................................................................................CTCAAGGTCTAGCAGGTAG.......................................................................1912.002.001.00-----------------------------------------------------------------1.00-
...................CTCGTCAAGATGGGCTATG..................................................................................................................................................1912.002.00----------2.00---------------------------------------------------------
.................TCCTCGTCAAGATGGGCTATGAG................................................................................................................................................2312.002.00-----------------------------1.00---------------1.00----------------------
..............................................................................................CTCAAGGTCTAGCAGGTAGCACATTAT...............................................................272.000.00-----------------------2.00--------------------------------------------
......................GTCAAGATGGGCTATGAGTTTGGCAAGG......................................................................................................................................2812.002.00------2.00-------------------------------------------------------------
..........................AGATGGGCTATGAGTTTGGCAAGGGT....................................................................................................................................2612.002.00-----------1.00---------------------------------------1.00----------------
........................CAAGATGGGCTATGAGTTT.............................................................................................................................................1911.001.00-----1.00--------------------------------------------------------------
..................................................GTGAGTGCCTGCTGCCCTGAGTTA..............................................................................................................2411.005.00--------------------------------------1.00-----------------------------
..........................................................................................ACAGCTCAAGGTCTAGCAGGT.........................................................................2111.001.00---------------------------------------------------------1.00----------
...............................................................................................TCAAGGTCTAGCAGGTAGCAAA...................................................................2211.004.00---------------1.00----------------------------------------------------
....ATTGGCTCCAAACTCCTCGTCA..............................................................................................................................................................2211.001.001.00-------------------------------------------------------------------
...............................................................................................TCAAGGTCTAGCAGGTAGCACTTAT................................................................2511.004.00--1.00-----------------------------------------------------------------
..............................................................................................CTCAAGGTCTAGCAGGTAGCAC....................................................................2211.001.00-----------------------------------------------------1.00--------------
..........................................................................................ACAGCTCAAGGTCTAGCAGGTAGT......................................................................2411.004.00--1.00-----------------------------------------------------------------
....ATTGGCTCCAAACTCCTCGTC...............................................................................................................................................................2111.001.00-----------------------------------------1.00--------------------------
............................................................................................AGCTCAAGGTCTAGCAGGTAG.......................................................................2111.001.001.00-------------------------------------------------------------------
............................................................................................AGCTCAAGGTCTAGCAGGTAGC......................................................................2211.001.001.00-------------------------------------------------------------------
.......................................................................................................TAGCAGGTAGCACAGCCTCTGT...........................................................2211.001.00----------------------------1.00---------------------------------------
......................GTCAAGATGGGCTATGAGTTTGGCAA........................................................................................................................................2611.001.00-----------1.00--------------------------------------------------------
.............................TGGGCTATGAGTTTGGCAAGGGTGAG.................................................................................................................................2611.001.00------------------1.00-------------------------------------------------
..............................................................................................CTCAAGGTCTAGCAGGTAGCACAGC.................................................................2511.001.00-1.00------------------------------------------------------------------
..................................................GTGAGTGCCTGCTGCCCTGAGTTT..............................................................................................................2411.005.001.00-------------------------------------------------------------------
...............................................................................................TCAAGGTCTAGCAGGTAGCAA....................................................................2111.004.00-------------------------1.00------------------------------------------
..............................................................................................CTCAAGGTCTAGCAGGTAGCACAG..................................................................2411.001.00------------------------------------------------1.00-------------------
............................................................................................AGCTCAAGGTCTAGCAGGTAGCA.....................................................................2311.001.00-----------------------------1.00--------------------------------------
...........................................................................................CAGCTCAAGGTCTAGCAGGTAG.......................................................................2211.001.00------------------------------1.00-------------------------------------
......TGGCTCCAAACTCCTCGTCAAGATGGGC......................................................................................................................................................2811.001.00---------------------1.00----------------------------------------------
...............................................................................................TCAAGGTCTAGCAGGTAGCACGT..................................................................2311.004.00-------------------------1.00------------------------------------------
..............................................................................................CTCAAGGTCTAGCAGGTAGCAAA...................................................................231.000.00----1.00---------------------------------------------------------------
...............................................................................................TCAAGGTCTAGCAGGTAGCACAGTAA...............................................................2611.0018.00------------------------------------------------------1.00-------------
..............................................................................................CTCAAGGTCTAGCAGGTAGCAT....................................................................221.000.00----1.00---------------------------------------------------------------
.............................TGGGCTATGAGTTTGGCAAGGGTTT..................................................................................................................................251.000.00---------------------1.00----------------------------------------------
..........................................................................................ACAGCTCAAGGTCTAGCAGGTTT.......................................................................2311.001.00--1.00-----------------------------------------------------------------
.....................................................AGTGCCTGCTGCCCTGAGTTG..............................................................................................................2111.001.00---------------------------------------1.00----------------------------
.......................................................................................................TAGCAGGTAGCACAGCCTCTGTCTT........................................................2511.001.00-------------------------------------------------1.00------------------
......................GTCAAGATGGGCTATGAGTTTGGCA.........................................................................................................................................2511.001.00-----------1.00--------------------------------------------------------
..........................AGATGGGCTATGAGTTTGGCAAGGG.....................................................................................................................................2511.001.00---------------------------------------------------------------1.00----
...........................GATGGGCTATGAGTTTGGCAAGGGTT...................................................................................................................................261.000.00-----------1.00--------------------------------------------------------
...................................................................................................................................................TGCAGAAGGCCGGGTGGAGCCCATCCATG........2911.001.00------------------1.00-------------------------------------------------
..............................................................................................CTCAAGGTCTAGCAGGTAGCGAA...................................................................231.000.00----1.00---------------------------------------------------------------
.............................TGGGCTATGAGTTTGGCAAG.......................................................................................................................................2011.001.00-1.00------------------------------------------------------------------
................................................................................................CAAGGTCTAGCAGGTAGCACAGC.................................................................2311.001.00-------------1.00------------------------------------------------------
.......................TCAAGATGGGCTATGAGTTTG............................................................................................................................................2111.001.00-------------------------------------------------------1.00------------
..........................................................................................ACAGCTCAAGGTCTAGCAGGTAGA......................................................................2411.004.00--------------------------------------------------1.00-----------------
..................................................GTGAGTGCCTGCTGCCCTGAGTTGAGAGGGAGTCCTTAACACAGCTCAAGGTCTAGCAGGTAGCACAGCCTCTGTCTTTCTCAG..................................................8411.001.00---------1.00----------------------------------------------------------
...............................................................................................TCAAGGTCTAGCAGGTAGCACAGCA................................................................2511.0016.00--------1.00-----------------------------------------------------------
...............................GGCTATGAGTTTGGCAAGGGTGA..................................................................................................................................2311.001.00-------------1.00------------------------------------------------------
...............................................................................................TCAAGGTCTAGCAGGTAGC......................................................................1911.001.00----------------------1.00---------------------------------------------
...............................................................................................TCAAGGTCTAGCAGGTA........................................................................1720.500.50------------------------------0.50-------------------------------------

Antisense strand
GGGCATTGGCTCCAAACTCCTCGTCAAGATGGGCTATGAGTTTGGCAAGGGTGAGTGCCTGCTGCCCTGAGTTGAGAGGGAGTCCTTAACACAGCTCAAGGTCTAGCAGGTAGCACAGCCTCTGTCTTTCTCAGGTTTGGGCCGGCATGCAGAAGGCCGGGTGGAGCCCATCCATGCTGTAGTG
..................................................(((..(((((((((((.(((((((.((((....))))....))))))).)))..)))))))).)))....................................................................
..................................................51.....................................................................122............................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR206941(GSM723282)
other. (brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR095853(SRX039174)
sequencing of miRNA from wild type and diseas. (heart)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR037919(GSM510457)
e12p5_rep1. (embryo)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)
.....................................................................................................................................................CAGAAGGCCGGGTGGATTT................ 191.000.00-------------------------------------------1.00------------------------
....................................................................................................GTCTAGCAGGTAGCAAAA.................................................................. 181.000.00------------------------------------------1.00-------------------------
.........CTCCAAACTCCTCGTGC.............................................................................................................................................................. 171.000.00----------------------------------------------1.00---------------------
...........................................................................GAGGGAGTCCTTAAC.............................................................................................. 1520.500.50-------------------------------0.50------------------------------------