ID: uc008nlc.0
GENE: Trpc4ap(18)
chr2:155460827-155461021-


(1)
AGO.mut 		(2)
AGO1.ip 		(15)
AGO2.ip 		(2)
AGO3.ip 		(8)
B-CELL 		(30)
BRAIN 		(4)
CELL-LINE 		(3)
DCR.mut 		(2)
DGCR8.mut 		(10)
EMBRYO 		(3)
ESC 		(1)
HEART 		(1)
KIDNEY 		(6)
LIVER 		(4)
LYMPH 		(13)
OTHER 		(7)
OTHER.mut 		(4)
PIWI.ip 		(1)
PIWI.mut 		(6)
SKIN 		(4)
SPLEEN 		(23)
TESTES 		(1)
THYMUS 		(3)
TOTAL-RNA 		(1)
UTERUS

Sense strand
GGCAGCAGCACTACCTGCACAAGGATAAGGACAGCACCTGCCTGGAGAATGTGAGTGCCCCACCCTGAGTGACAGTGGGAGGACACTGGCGTGTGTGAGCCCCGTCCTCTACTAAGCACAGCCCAACCCTCTCGCTTTCACTCAGAGCTCCTGTATCAGCTTCTCGTACTGGAAGGAGACAGTGTCCATCTTGTT
................................................................((((((((.(((((((((.....(((.((((((((.......)))......))))))))....))))))))).))))))))..................................................
..........................................................59....................................................................................145................................................
SizePerfect hitTotal NormPerfect NormSRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		mjTestesWT1()
Testes Data. (testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR394083(GSM855969)
background strain: C57BL6/SV129cell type: KRa. (cell line)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR059773(GSM562835)
CD4_Dicer. (spleen)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR037922(GSM510460)
e12p5_rep4. (embryo)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR553586(SRX182792)
source: Testis. (testes)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR037901(GSM510437)
testes_rep2. (testes)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR206942(GSM723283)
other. (brain)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR028731(GSM400968)
Mili-wt-associated. (testes)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR206940(GSM723281)
other. (brain)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		RuiDGCR8WT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR073955(GSM629281)
total RNA. (blood)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR525238(SRA056111/SRX170314)
Second IgG control. (Blood)		SRR073954(GSM629280)
total RNA. (blood)
............................................................................................................................AACCCTCTCGCTTTCACTCAGT.................................................221107.004.00--8.008.00-6.00--2.005.007.007.00-6.00-7.004.002.00-4.00-5.001.00-4.001.002.00-1.00-2.001.00--3.003.00---1.002.00----1.00----1.001.00------1.00---1.001.001.00------1.00----------1.00--------1.00------1.001.00-1.00-1.00-1.00------------
..........................AAGGACAGCACCTGCCTGGAGAAT.................................................................................................................................................24132.0032.0016.007.00----5.00-2.00---------1.00---1.00-----------------------------------------------------------------------------------------------
...........................................................................................................................CAACCCTCTCGCTTTCACTCAGT.................................................23117.001.00--1.005.00-5.00---2.00------2.00-------------------------------------------------1.00-----------------------1.00---------------------------
.........................TAAGGACAGCACCTGCCTGGAG....................................................................................................................................................2219.009.00-------9.00--------------------------------------------------------------------------------------------------------------
...............................................................CCTGAGTGACAGTGGGAGGACAC.............................................................................................................2318.008.00-1.002.00----------1.00---------1.00---------1.00---------------1.00----------------------------1.00---------------------------------------
............................................................................................................................AACCCTCTCGCTTTCACTCAGA.................................................2218.008.00--2.00------1.00---------------------1.00---------------------------1.00-----------------------1.00-----------1.00----------1.00-----------
.................................................................................................................................................AGCTCCTGTATCAGCTTCTCGT............................2217.007.001.003.00------2.00-------------1.00-----------------------------------------------------------------------------------------------
.......................................................................................................................................................................ACTGGAAGGAGACAGTGTCCATCTT...2516.006.00------------------4.00----2.00----------------------------------------------------------------------------------------------
............ACCTGCACAAGGATAAGGACAGC................................................................................................................................................................2316.006.00-4.00----2.00---------------------------------------------------------------------------------------------------------------
.......................GATAAGGACAGCACCTGCCTGGAGAAT.................................................................................................................................................2715.005.00----1.00-------1.00---------------------------------1.00--------------1.00-----------1.00--------------------------------------------
............................................................................................................................AACCCTCTCGCTTTCACTCAG..................................................2114.004.00--2.00------------------------------------------------1.00--1.00---------------------------------------------------------------
...............TGCACAAGGATAAGGACAGCAC..............................................................................................................................................................2214.004.00----1.00-------2.00-------------------------------------------1.00-------------------------------------------------------------
...................................................................................................................................................................TCGTACTGGAAGGAGACAGT............2014.004.002.001.00----1.00---------------------------------------------------------------------------------------------------------------
................................AGCACCTGCCTGGAGAAT.................................................................................................................................................1823.503.50-0.50-----------------0.50-------------------------------------------------------------------------0.50------------------0.500.500.500.50--
...................................................................................................................................................................TCGTACTGGAAGGAGACA..............1813.003.00-------------------------------------2.00-----1.00--------------------------------------------------------------------------
..............................................................................................................................................................GCTTCTCGTACTGGAAGGAGACAGTG...........2613.003.00------------1.00-2.00-------------------------------------------------------------------------------------------------------
...............................................................CCTGAGTGACAGTGGGAGGA................................................................................................................2012.002.00----------------------------------------------------------------------------------------------1.00------------1.00----------
................................................................................................................................................................TTCTCGTACTGGAAGGAGACAGTGTC.........2612.002.00------------------------------------1.00-1.00-------------------------------------------------------------------------------
...............................................................CCTGAGTGACAGTGGGAGGACAT.............................................................................................................2312.002.00--------------------------------------------------------------------1.00------------------1.00------------------------------
..............................................................CCCTGAGTGACAGTGGGAT..................................................................................................................192.000.00-----------------2.00----------------------------------------------------------------------------------------------------
.................................................................................................................................................................TCTCGTACTGGAAGGAGACAGT............2212.002.001.00-------1.00-------------------------------------------------------------------------------------------------------------
................................................................CTGAGTGACAGTGGGAGGACA..............................................................................................................2112.002.00----1.00---------------------------------------------------------------------------1.00-------------------------------------
..................................................................................................................................................................CTCGTACTGGAAGGAGACAGTGTCC........2512.002.00----2.00-----------------------------------------------------------------------------------------------------------------
.................CACAAGGATAAGGACAGCA...............................................................................................................................................................1912.002.00------------------------------------------------------1.00-----------------------------------------1.00---------------------
......................GGATAAGGACAGCACCTGCCTGGAG....................................................................................................................................................2512.002.00-------2.00--------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................TCTCGTACTGGAAGGAGACAGTGTC.........2512.002.00-----------------------------------------------------------------1.00--------1.00-------------------------------------------
..............................................................................................................................CCCTCTCGCTTTCACTCAGAAT...............................................222.000.00-----------------------------------------2.00----------------------------------------------------------------------------
................................................................................................................................................................TTCTCGTACTGGAAGGAGACAGTGTCCATC.....3012.002.00-----------------------------------------------1.00------------------------------------------------------------1.00---------
...............TGCACAAGGATAAGGACAGCA...............................................................................................................................................................2112.002.00----1.00---------------------------------------1.00-------------------------------------------------------------------------
....................................................................................................................................................TCCTGTATCAGCTTCTCGTACTGGAAGGAG.................3012.002.00---------------------------2.00------------------------------------------------------------------------------------------
................................................................................................................................................................TTCTCGTACTGGAAGGAGACAGT............2312.002.001.00-------------------------------------------------1.00-------------------------------------------------------------------
..........................AAGGACAGCACCTGCCTGGAGA...................................................................................................................................................2212.002.001.001.00--------------------------------------------------------------------------------------------------------------------
.........................TAAGGACAGCACCTGCCTGGAGAATAGC..............................................................................................................................................282.000.00--------------2.00-------------------------------------------------------------------------------------------------------
...................................................................................................................................................................TCGTACTGGAAGGAGACAGTGTCCATCT....2812.002.00------------------------------------1.00------------------------------------------------1.00--------------------------------
...............................................................CCTGAGTGACAGTGGGAGGACT..............................................................................................................222.000.00--1.00----------------------------------------------1.00--------------------------------------------------------------------
............................................................................................................................AACCCTCTCGCTTTCACTCAGC.................................................2212.004.00-------------------------------------------------------------------------------------------------1.00----1.00---------------
..................................................GTGAGTGCCCCACCCTGAGTGACAGTG......................................................................................................................2712.002.00------------------------------------------------1.00--------------------------1.00------------------------------------------
...............................................................CCTGAGTGACAGTGGGAGGACA..............................................................................................................2212.002.00------------------------------------------2.00---------------------------------------------------------------------------
............ACCTGCACAAGGATAAGGAC...................................................................................................................................................................2012.002.001.001.00--------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................AGCTTCTCGTACTGGAAGGAGA................2212.002.00--------2.00-------------------------------------------------------------------------------------------------------------
.................................GCACCTGCCTGGAGAAT.................................................................................................................................................1741.751.75-------------------------------------0.50-------------------0.25-----------------------------------------------------0.75-----0.25
........................ATAAGGACAGCACCTGCCTGGAGAAT.................................................................................................................................................2611.001.00------------1.00---------------------------------------------------------------------------------------------------------
................GCACAAGGATAAGGACAGCA...............................................................................................................................................................2011.001.00-----------------------------1.00----------------------------------------------------------------------------------------
....................................................................................................................................................................CGTACTGGAAGGAGACAGT............1911.001.001.00---------------------------------------------------------------------------------------------------------------------
.........................................................................AGTGGGAGGACACTGGCGTGTGT...................................................................................................2311.001.00----1.00-----------------------------------------------------------------------------------------------------------------
...............TGCACAAGGATAAGGACAGCACCTGCCTGGAG....................................................................................................................................................3211.001.00---------------------------------------1.00------------------------------------------------------------------------------
...........................................................................................................................CAACCCTCTCGCTTTCACTCTGT.................................................231.000.00--1.00-------------------------------------------------------------------------------------------------------------------
...............................................................CCTGAGTGACAGTGGGAGGACAAT............................................................................................................2411.002.00---------------------------------1.00------------------------------------------------------------------------------------
..............................................................................................................................................................GCTTCTCGTACTGGAAGGAGACAG.............2411.001.00-----------------------------1.00----------------------------------------------------------------------------------------
...........................................................................................................................CAACCCTCTCGCTTTCACTCAG..................................................2211.001.00-----1.00----------------------------------------------------------------------------------------------------------------
..........................AAGGACAGCACCTGCCTGGAGAATAGC..............................................................................................................................................2711.0032.00-----------------------------------------------------------------------------------------1.00----------------------------
...........TACCTGCACAAGGATAAGG.....................................................................................................................................................................1911.001.00--------------------------------------------------------------------------------------1.00-------------------------------
....................................................................................................................................................TCCTGTATCAGCTTCTCGTACTGGAAGG...................2811.001.00----------------------------1.00-----------------------------------------------------------------------------------------
....................AAGGATAAGGACAGCACCT............................................................................................................................................................1911.001.00------1.00---------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................CGTACTGGAAGGAGACAGTGTCCAT......2511.001.00------------1.00---------------------------------------------------------------------------------------------------------
............................................................................................................................AACCCTCTCGCTTTCACTCAGTA................................................2311.004.00------------------------------1.00---------------------------------------------------------------------------------------
............................................................................................................................AACCCTCTCGCTTTCACTCA...................................................2011.001.00-----------------1.00----------------------------------------------------------------------------------------------------
............................................................................................................................AACCCTCTCGCTTTCACTCACT.................................................2211.001.00-----------1.00----------------------------------------------------------------------------------------------------------
..........................AAGGACAGCACCTGCCTGGATAAT.................................................................................................................................................241.000.00--------------------------------------------1.00-------------------------------------------------------------------------
.........................TAAGGACAGCACCTGCCTGGAGAATATT..............................................................................................................................................281.000.00--------------1.00-------------------------------------------------------------------------------------------------------
..................................................................................................................................................................CTCGTACTGGAAGGAGAC...............1811.001.00--------------------1.00-------------------------------------------------------------------------------------------------
..............................................................................................................................................................GCTTCTCGTACTGGAAGGAGACAGT............2511.001.00------1.00---------------------------------------------------------------------------------------------------------------
.........................................................................AGTGGGAGGACACTGGCGTGTG....................................................................................................2211.001.00---1.00------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................TCAGCTTCTCGTACTGGAAGGAGACAGT............2811.001.00---------------------------------------------------------------------------------1.00------------------------------------
................................................................CTGAGTGACAGTGGGAGGACAC.............................................................................................................2211.001.00-------------------------------------------------------1.00--------------------------------------------------------------
.................................................................TGAGTGACAGTGGGAGGACA..............................................................................................................2011.001.00----------------------------------------------1.00-----------------------------------------------------------------------
.........................TAAGGACAGCACCTGCCTGGAGAATAGT..............................................................................................................................................281.000.00--------------1.00-------------------------------------------------------------------------------------------------------
..............................................................................................................................................................GCTTCTCGTACTGGAAGGAGACAGTGTC.........2811.001.00------------------------------------1.00---------------------------------------------------------------------------------
...............TGCACAAGGATAAGGACAGCT...............................................................................................................................................................211.000.00----1.00-----------------------------------------------------------------------------------------------------------------
.................................................................TGAGTGACAGTGGGAGGAC...............................................................................................................1911.001.00--1.00-------------------------------------------------------------------------------------------------------------------
...............................................................CCTGAGTGACAGTGGGAGGACATAT...........................................................................................................2511.002.00---------------------------------1.00------------------------------------------------------------------------------------
..............................ACAGCACCTGCCTGGAGAAT.................................................................................................................................................2011.001.00-----------------------------1.00----------------------------------------------------------------------------------------
........................................................................................................................................................GTATCAGCTTCTCGTACTGGA......................2111.001.00--------------------------------------------------------------------------------------------------------------1.00-------
...................................................................AGTGACAGTGGGAGGACA..............................................................................................................1811.001.00------1.00---------------------------------------------------------------------------------------------------------------
..................ACAAGGATAAGGACAGCACCT............................................................................................................................................................2111.001.00----1.00-----------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................TCTCGTACTGGAAGGAGACAGTG...........2311.001.00---------------------------------------------------------1.00------------------------------------------------------------
..............CTGCACAAGGATAAGGACAGCA...............................................................................................................................................................2211.001.00----1.00-----------------------------------------------------------------------------------------------------------------
...............................................................CCTGAGTGACAGTGGGAGGACACTGGCGTGTGTGAGCCCCGTCCTCTACTAAGCACAGCCCAACCCTCTCGCTTTCACTCA...................................................8111.001.00--------------------------------1.00-------------------------------------------------------------------------------------
..............CTGCACAAGGATAAGGACA..................................................................................................................................................................1911.001.00-------------------------------------------------------------------1.00--------------------------------------------------
...........................................................................................................................................................TCAGCTTCTCGTACTGGAAGGAGACAG.............2711.001.00----------------------------------------------------1.00-----------------------------------------------------------------
.......................................................................................................................................................TGTATCAGCTTCTCGTACTGGAAGGAGAC...............2911.001.00--------------------1.00-------------------------------------------------------------------------------------------------
..........................AAGGACAGCACCTGCCTGGAG....................................................................................................................................................2111.001.00-------------------------------1.00--------------------------------------------------------------------------------------
.........................................................................................................................................................................TGGAAGGAGACAGTGTCCATCT....2211.001.00-------------------------1.00--------------------------------------------------------------------------------------------
................GCACAAGGATAAGGACAGC................................................................................................................................................................1911.001.00----------------------1.00-----------------------------------------------------------------------------------------------
.......................................................................................................................................................TGTATCAGCTTCTCGTACTGGAAGGA..................2611.001.00----------------------------------------------------1.00-----------------------------------------------------------------
.....................................................................................................................ACAGCCCAACCCTCTCGCTTTC........................................................2211.001.00--1.00-------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................CTCGTACTGGAAGGAGACAGT............2111.001.001.00---------------------------------------------------------------------------------------------------------------------
...........................................................................................................................CAACCCTCTCGCTTTCACTCATT.................................................231.000.00-----------------1.00----------------------------------------------------------------------------------------------------
.....................................................................................................................................................CCTGTATCAGCTTCTCGTACTGGAAGGAGA................3011.001.00---------------------------------------------------------------------1.00------------------------------------------------
......AGCACTACCTGCACAAGGAT.........................................................................................................................................................................2011.001.00------------------1.00---------------------------------------------------------------------------------------------------
..............................................................................................................................................................GCTTCTCGTACTGGAAGGAGACAGTGT..........2711.001.00-----------------------------------------------------------------------------1.00----------------------------------------
................................................................CTGAGTGACAGTGGGAGGACACTG...........................................................................................................2411.001.00-------------------------------------------1.00--------------------------------------------------------------------------
.................................................................TGAGTGACAGTGGGAGGACACTGGCGTGTGTGAGCCCCGTCCTCTACTAAGCACAGCCCAACCCTCTCGCTTTCACTCAGT.................................................811.000.00--------------------------------1.00-------------------------------------------------------------------------------------
....................AAGGATAAGGACAGCACC.............................................................................................................................................................1811.001.00----------------------------------------------------------------------------------------1.00-----------------------------
...................................................................................................................................................................TCGTACTGGAAGGAGACAGTGCCA........241.000.00----1.00-----------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................TCGTACTGGAAGGAGACAGTGTCCA.......2511.001.00------------1.00---------------------------------------------------------------------------------------------------------
.................................................................TGAGTGACAGTGGGAGGACAA.............................................................................................................2111.001.00----------1.00-----------------------------------------------------------------------------------------------------------
.............................GACAGCACCTGCCTGGAGAATATT..............................................................................................................................................241.000.00------------------------------------------------1.00---------------------------------------------------------------------
..............CTGCACAAGGATAAGGACAG.................................................................................................................................................................2011.001.00----------------------------1.00-----------------------------------------------------------------------------------------
...................................................................................................................................................................TCGTACTGGAAGGAGACAG.............1911.001.00-1.00--------------------------------------------------------------------------------------------------------------------
................................................................................................................................CTCTCGCTTTCACTCAGT.................................................181.000.00-------------------1.00--------------------------------------------------------------------------------------------------
....GCAGCACTACCTGCACAAGGATAAGGAC...................................................................................................................................................................2811.001.00--------------------------------------------------------------------------------------------------------1.00-------------
....................................................................................................................................................................CGTACTGGAAGGAGACAGTGTC.........2211.001.00------------------------------------------------------------1.00---------------------------------------------------------
........................................................................................................................................................................CTGGAAGGAGACAGTGTCCA.......2011.001.00-------------------------1.00--------------------------------------------------------------------------------------------
.............................................................................................................................................................AGCTTCTCGTACTGGAAGGAGAC...............2311.001.00--------------------1.00-------------------------------------------------------------------------------------------------
..................................................................................................................................................................CTCGTACTGGAAGGAGACA..............1911.001.00----1.00-----------------------------------------------------------------------------------------------------------------
................................................................CTGAGTGACAGTGGGAGGACACT............................................................................................................2311.001.00--------------------------------------------------------------------------------------------1.00-------------------------
..................................................................................................................................................................CTCGTACTGGAAGGAGACAGTGTCCA.......2611.001.00-----------------------------------------------------1.00----------------------------------------------------------------
................................................................................................................................................................TTCTCGTACTGGAAGGAGACAGTGTCCA.......2811.001.00--------------1.00-------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................GTACTGGAAGGAGACAGTGTCCATCT....2611.001.00------------1.00---------------------------------------------------------------------------------------------------------
..................................................GTGAGTGCCCCACCCTGAGTGACAGTGGGAGGACACTGGCGTGTGTGAGCCCCGTCCTCTACTAAGCACAGCCCAACCCTCTC..............................................................8311.001.00--------------------------------1.00-------------------------------------------------------------------------------------
..........................................................................................................................................................ATCAGCTTCTCGTACTGGAAGGAG.................2411.001.001.00---------------------------------------------------------------------------------------------------------------------
...............................CAGCACCTGCCTGGAGAAT.................................................................................................................................................1911.001.00------------------------------------------------------------------------------------1.00---------------------------------
...............................................................................................................................................................CTTCTCGTACTGGAAGGAGACAGTGTCC........2811.001.00--------------------------------------1.00-------------------------------------------------------------------------------
...................................................................................................................................................................TCGTACTGGAAGGAGACAGTGTC.........2311.001.00--------------------1.00-------------------------------------------------------------------------------------------------
............................................................................................................................AACCCTCTCGCTTTCACTCAAT.................................................2211.001.00------------------------------------------------------------------------1.00---------------------------------------------
................GCACAAGGATAAGGACAGCACCTGCC.........................................................................................................................................................2611.001.00----------------------------------------------------------------------------1.00-----------------------------------------
.................................................................................................................................................................TCTCGTACTGGAAGGAGACAG.............2111.001.00----------------------------------------------------------------------1.00-----------------------------------------------
..............................................................................................................................................................GCTTCTCGTACTGGAAGGA..................1911.001.00--------------------1.00-------------------------------------------------------------------------------------------------
.................................................................TGAGTGACAGTGGGAGGACATA............................................................................................................2211.001.00-----------------------------------------------------1.00----------------------------------------------------------------
.....................AGGATAAGGACAGCACCTGCC.........................................................................................................................................................2111.001.00----1.00-----------------------------------------------------------------------------------------------------------------
................................................................................................................................................................TTCTCGTACTGGAAGGAG.................1811.001.00---------------------------------------------1.00------------------------------------------------------------------------
..............................................................................................................................................................................GGAGACAGTGTCCATCTTG..1911.001.00-------------------------------------------------------------------------------1.00--------------------------------------
.........................................................................................................................................................TATCAGCTTCTCGTACTGGAAGGAG.................2511.001.00--------------------------1.00-------------------------------------------------------------------------------------------
...........................................................................................................................................................TCAGCTTCTCGTACTGGAAGGAGACA..............2611.001.00-----------------------------------------------1.00----------------------------------------------------------------------
............................................................................................................................AACCCTCTCGCTTTCACTC....................................................1911.001.00-------------------------------------------------------------------------------------------------------------1.00--------
...............................................................................................................................................................CTTCTCGTACTGGAAGGAGACAGTGTC.........2711.001.00---------------------------1.00------------------------------------------------------------------------------------------
..........................................................................................................................................................ATCAGCTTCTCGTACTGGAAGGAGA................2511.001.00----------------------------------------------------------------------------------------------------1.00-----------------
.......................................................................................................................................................................ACTGGAAGGAGACAGTGTCC........2011.001.00-----------------------1.00----------------------------------------------------------------------------------------------
...........................AGGACAGCACCTGCCTGG......................................................................................................................................................1820.500.50---------------------------------------------------------------------------------------------0.50------------------------
.................................................................TGAGTGACAGTGGGAGGA................................................................................................................1820.500.50-------------------------------------------------------0.50--------------------------------------------------------------
................................................................CTGAGTGACAGTGGGAGGA................................................................................................................1920.500.50--------------------------------------------------------------------------------------------------------------------0.50-
...................................................................................................................................................................TCGTACTGGAAGGAG.................1530.330.33--------------------0.33-------------------------------------------------------------------------------------------------
....................................................................GTGACAGTGGGAGGAC...............................................................................................................1640.250.25----------------------------------------------------------0.25-----------------------------------------------------------
.................................GCACCTGCCTGGAGAATAGCT.............................................................................................................................................2140.251.75--------------------------------------------------------0.25-------------------------------------------------------------
......................................................................................................................................................................TACTGGAAGGAGACAG.............1680.120.12--------------------0.12-------------------------------------------------------------------------------------------------

Antisense strand
GGCAGCAGCACTACCTGCACAAGGATAAGGACAGCACCTGCCTGGAGAATGTGAGTGCCCCACCCTGAGTGACAGTGGGAGGACACTGGCGTGTGTGAGCCCCGTCCTCTACTAAGCACAGCCCAACCCTCTCGCTTTCACTCAGAGCTCCTGTATCAGCTTCTCGTACTGGAAGGAGACAGTGTCCATCTTGTT
................................................................((((((((.(((((((((.....(((.((((((((.......)))......))))))))....))))))))).))))))))..................................................
..........................................................59....................................................................................145................................................
SizePerfect hitTotal NormPerfect NormSRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		mjTestesWT1()
Testes Data. (testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR394083(GSM855969)
background strain: C57BL6/SV129cell type: KRa. (cell line)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR059773(GSM562835)
CD4_Dicer. (spleen)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR037922(GSM510460)
e12p5_rep4. (embryo)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR553586(SRX182792)
source: Testis. (testes)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR037901(GSM510437)
testes_rep2. (testes)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR206942(GSM723283)
other. (brain)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR028731(GSM400968)
Mili-wt-associated. (testes)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR206940(GSM723281)
other. (brain)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		RuiDGCR8WT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR073955(GSM629281)
total RNA. (blood)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR525238(SRA056111/SRX170314)
Second IgG control. (Blood)		SRR073954(GSM629280)
total RNA. (blood)