ID: uc008nkx.6
GENE: Gss(6)
chr2:155398862-155399111-


(1)
AGO.mut
(2)
AGO1.ip
(19)
AGO2.ip
(1)
AGO3.ip
(9)
B-CELL
(41)
BRAIN
(3)
CELL-LINE
(1)
DCR.mut
(1)
DGCR8.mut
(7)
EMBRYO
(7)
ESC
(4)
FIBROBLAST
(3)
HEART
(3)
KIDNEY
(17)
LIVER
(1)
LUNG
(2)
LYMPH
(14)
OTHER
(7)
OTHER.mut
(1)
OVARY
(3)
PIWI.ip
(1)
PIWI.mut
(5)
SKIN
(3)
SPLEEN
(19)
TESTES
(1)
THYMUS

Sense strand
ACCATCTCATCAGTCCCTCCTTTCTGTAGGACTGGCCTCAGATTCATGCTCTTCCTGCCCTTGCCCCAAGCCCCAAGTGCTGGGCTCACAGCCTGCGCCAGCAGGACTACTTGAGAAGCTGTGTTCTCACCTCTCTCTGAAGGAGCAGCAGGAAGGGCGAGGTCTGCGGCGACCCTGGCTCACTTGTGCTCTTTCTGCAGTGCGGTGGTGCTACTGATTGCTCAAGAGAAGGAAAGGAACATATTTGACC
..........................................................................................................................................(((((((((.((((..((((.(((((......))).)).)))).))))))))))))).......................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormmjLiverKO1()
Liver Data. (Zcchc11 liver)
mjLiverWT1()
Liver Data. (liver)
SRR553585(SRX182791)
source: Kidney. (Kidney)
mjLiverWT3()
Liver Data. (liver)
SRR553582(SRX182788)
source: Brain. (Brain)
SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)
SRR306541(GSM750584)
19-24nt. (ago2 brain)
SRR306542(GSM750585)
19-24nt. (ago2 brain)
SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)
SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)
SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)
mjLiverKO3()
Liver Data. (Zcchc11 liver)
SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)
mjTestesWT4()
Testes Data. (testes)
mjLiverWT2()
Liver Data. (liver)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
GSM510444(GSM510444)
brain_rep5. (brain)
SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)
SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)
SRR306530(GSM750573)
19-24nt. (ago2 brain)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)
SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
SRR037906(GSM510442)
brain_rep3. (brain)
SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)
SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR073954(GSM629280)
total RNA. (blood)
SRR306535(GSM750578)
19-24nt. (ago2 brain)
SRR306537(GSM750580)
19-24nt. (ago2 brain)
SRR073955(GSM629281)
total RNA. (blood)
SRR206940(GSM723281)
other. (brain)
SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)
SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR206939(GSM723280)
other. (brain)
SRR346415(SRX098256)
source: Testis. (Testes)
SRR306534(GSM750577)
19-24nt. (ago2 brain)
SRR038744(GSM527279)
small RNA-Seq. (brain)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
SRR206941(GSM723282)
other. (brain)
SRR077866(GSM637803)
18-30 nt small RNAs. (liver)
SRR059765(GSM562827)
DN3_control. (thymus)
SRR037904(GSM510440)
brain_rep1. (brain)
SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)
SRR077864(GSM637801)
18-30 nt small RNAs. (liver)
SRR306540(GSM750583)
19-24nt. (ago2 brain)
mjTestesWT3()
Testes Data. (testes)
SRR206942(GSM723283)
other. (brain)
SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR037907(GSM510443)
brain_rep4. (brain)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)
SRR306529(GSM750572)
19-24nt. (ago2 brain)
SRR306533(GSM750576)
19-24nt. (ago2 brain)
RuiDcrWT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)
SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)
SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)
Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)
SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)
Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)
SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR095855BC3(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)
SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)
SRR065053(SRR065053)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)
SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)
SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)
mjTestesWT2()
Testes Data. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)
SRR059769(GSM562831)
Treg_Drosha. (spleen)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)
SRR306532(GSM750575)
19-24nt. (ago2 brain)
SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)
SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)
GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)
SRR065056(SRR065056)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
GSM640582(GSM640582)
small RNA in the liver with paternal control . (liver)
SRR042453(GSM539845)
mouse marginal zone B cells (spleen) [09-002]. (b cell)
SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)
SRR038741(GSM527276)
small RNA-Seq. (brain)
SRR553584(SRX182790)
source: Heart. (Heart)
SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)
SRR038743(GSM527278)
small RNA-Seq. (dicer brain)
SRR065046(SRR065046)
Tissue-specific Regulation of Mouse MicroRNA . (liver)
SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)
SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)
SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR402766(SRX117949)
source: ES PGK female cells. (ESC)
SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)
SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR306528(GSM750571)
19-24nt. (ago2 brain)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR306536(GSM750579)
19-24nt. (ago2 brain)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)
SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)
GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)
SRR306544(GSM750587)
19-24nt. (ago2 brain)
SRR037921(GSM510459)
e12p5_rep3. (embryo)
SRR306531(GSM750574)
19-24nt. (ago2 brain)
SRR077865(GSM637802)
18-30 nt small RNAs. (liver)
GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)
SRR065045(SRR065045)
Tissue-specific Regulation of Mouse MicroRNA . (liver)
SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR059770(GSM562832)
Treg_Dicer. (spleen)
Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
GSM361430(GSM361430)
WholeCerebellum_1month_Ptc+-_Ink4c--_rep2. (brain)
GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)
SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)
SRR037925(GSM510463)
e9p5_rep3. (embryo)
SRR014234(GSM319958)
Ovary total. (ovary)
Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
SRR039610(GSM527274)
small RNA-Seq. (brain)
SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)
SRR029123(GSM416611)
NIH3T3. (cell line)
SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)
SRR306538(GSM750581)
19-24nt. (ago2 brain)
SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCAGT.................................................221328.00328.0055.0023.0027.0014.007.0010.006.007.0012.0011.007.006.0010.00-8.003.003.00---3.003.005.003.004.00-6.003.001.00--1.004.004.002.004.00--3.001.004.003.003.002.003.001.003.001.00-2.002.00-1.002.00--1.00-2.002.001.00---2.001.001.00--1.001.00-1.00----1.00-1.00---1.00--1.001.00-1.001.001.001.001.001.00--1.001.00--1.00----1.00-1.00-1.00-1.001.00---1.001.001.001.001.00-1.00-1.00-1.00--1.00-1.001.001.00-1.00---
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCAG..................................................21149.0049.0013.003.003.002.005.001.00----1.001.00--------2.00---2.00---2.00----------------1.00-2.001.00--1.00---2.001.00----------------1.00----1.00------1.00--1.00---------------------------1.00-------1.00---------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCAGA.................................................22136.0049.001.00-2.003.00--3.005.00--------6.00----1.00-----1.00---------3.00-2.00---1.00-1.00----1.001.00--1.00----------------1.00----------1.00---------------------------------------1.00--------------1.00--
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCATT.................................................22112.002.00-----1.002.00---3.001.00---------1.00-----1.00------------------------------------------1.00---1.00--------------------------------------------------------1.00--------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCAGATT...............................................24111.0049.00-10.00---1.00--------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TCTGAAGGAGCAGCAGGAAGGG.............................................................................................22111.0011.00---------------1.00--8.00-------------------------------------------------2.00-----------------------------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCAGGA................................................2319.0049.00-----------------9.00--------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCAGTT................................................2318.00328.00---------------------1.00------2.002.00-1.00----------------------------1.00------------------------------------------------1.00------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCAGAT................................................2315.0049.00---2.00-------1.00----------1.00------1.00--------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGC....................................................1915.005.003.00----------1.00---------------------------------------------------------1.00----------------------------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCAA..................................................2115.002.00-3.00-------------2.00----------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCAGC.................................................2214.0049.00------1.00-----------------------------------------2.00--------------------------------------------------1.00----------------------------------------
............................................................................................................................................................................................................................CTCAAGAGAAGGAAAGGAACATATTTG...2714.004.00-------------1.00-----1.00-----------------------------------------------1.00----------------------------1.00-------------------------------------------
...........................................................................................................................................................................................................................GCTCAAGAGAAGGAAAGGAACAT........2314.004.00------------------------------3.00-----------------------------------------------------------------------1.00-------------------------------------
..............................................................................................................................................................................................................................CAAGAGAAGGAAAGGAACATATTTGACC2814.004.00-------------1.00-----2.00-----------------------------------------------1.00------------------------------------------------------------------------
.............................................................................................................................................................................................................................TCAAGAGAAGGAAAGGAACATATTTG...2614.004.00-------------1.00-----------2.00-------------------------------------------------------------------------------------1.00----------------------------
........................................................................................................................................................................................................................ATTGCTCAAGAGAAGGAAAGGAACAT........2613.003.00-------------2.00-----------1.00------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................CACTTGTGCTCTTTCTGCAGT.................................................2113.003.00--------------------1.00--------2.00--------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCAGAA................................................2313.0049.00-------------------------------------------------------------2.00----------1.00-------------------------------------------------------------------
.......................................................................................................................................TCTGAAGGAGCAGCAGGAAG...............................................................................................2012.002.00---------------2.00----------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................ACTTGTGCTCTTTCTGCAGT.................................................2012.002.00---1.00------------------------------1.00---------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCAGTA................................................2312.00328.00------------------------------------------------------1.00-----------1.00-------------------------------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCAGTAG...............................................2412.00328.00--------------1.00------------------------------------------------------------------------------------------------------------------------1.00----
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCA...................................................2012.002.00----1.00-----------------------------------------------1.00---------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................GCTCAAGAGAAGGAAAGGAACA.........2212.002.00------------------------------2.00-------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................AGAAGGAAAGGAACATATT.....1922.002.00-------------------------------------1.00-------------------------1.00----------------------------------------------------------------------------
..........................................................................................................................................................................................................................TGCTCAAGAGAAGGAAAGGAACATATT.....2712.002.00-------------1.00-----------1.00------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................TACTGATTGCTCAAGAGAAGGAAAGGAACAT........3112.002.00-----------------------2.00--------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................CAAGAGAAGGAAAGGAACA.........1911.001.00--------------------------------------------------------------------------------1.00-----------------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGAATT.................................................221.000.00----------------------------------1.00---------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................CTCAAGAGAAGGAAAGGAACATATTTGACC3011.001.00-------------------1.00------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................AGAGAAGGAAAGGAACATATTTG...2311.001.00--------------------------------------------------------------------------------------------------------------------------------1.00-----------
..................................................................................................................................................AGCAGGAAGGGCGAGGTCTGTTT.................................................................................231.000.00-----------------------------------------------------------------1.00--------------------------------------------------------------------------
.....................................................................................................CAGGACTACTTGAGACGG...................................................................................................................................181.000.00-------------------------------1.00------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................AGAAGGAAAGGAACAGATT.....191.000.00---------------------------------------------------------------1.00----------------------------------------------------------------------------
...............................................................................................................................................................................TGGCTCACTTGTGCTTGA.........................................................181.000.00---------------------------------------------------------------------------------------------------------------------------------1.00----------
............................................................................................................................................................................................................................CTCAAGAGAAGGAAAGGAACATATTTGA..2811.001.00-------------------1.00------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................AGCAGGAAGGGCGAGGTCTGAAA.................................................................................231.000.00-----------------------------------------------------------------------------------------------------------1.00--------------------------------
.......................................................................................................................................TCTGAAGGAGCAGCAGGAAGGGCGTAT........................................................................................2711.001.00------------1.00-------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCGGT.................................................2211.005.00-1.00------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TCTGAAGGAGCAGCAGGAAGGGCGAGG........................................................................................2711.001.00------------------------------------------------------------------------------------1.00-------------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCAGTAAA..............................................2511.00328.00---1.00----------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TCTGAAGGAGCAGCAGGAAAGG.............................................................................................221.000.00------------------1.00-------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................TCAAGAGAAGGAAAGGAACATATTTGAC.2811.001.00---------------------------------------------------------------------------------------------------------1.00----------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCAAT.................................................2211.002.00---------------1.00----------------------------------------------------------------------------------------------------------------------------
........................................................................................CAGCCTGCGCCAGCAGT.................................................................................................................................................171.000.00-----------------------------------------------------------------------------------------------1.00--------------------------------------------
..............................................................................................................................................................................................................................CAAGAGAAGGAAAGGAACATA.......2111.001.00----------------------------------------------------------------------------------------------------1.00---------------------------------------
.......................................................................................................................................TCTGAAGGAGCAGCAGGAAGGGC............................................................................................2311.001.00--1.00-----------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................ATTGCTCAAGAGAAGGAAAGGAACATA.......2711.001.00-------------------1.00------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCCGT.................................................2211.005.00-------------------------------1.00------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................AGAGAAGGAAAGGAACATAT......2011.001.00--------------------------------------------------------------1.00-----------------------------------------------------------------------------
.......................................................................................................................................TCTGAAGGAGCAGCAGGAAGGGCG...........................................................................................2411.001.00--------------------------------------1.00-----------------------------------------------------------------------------------------------------
...............................................................................................................................................................................TGGCTCACTTGTGCTCTTTCTGC....................................................2311.001.00---------------------------------------------------1.00----------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................TTGCTCAAGAGAAGGAAAGGAACATATT.....2811.001.00-------------------1.00------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................AGCAGGAAGGGCGAGGTCTGAA..................................................................................221.000.00--------------------------------------------------------------------------------------------------------1.00-----------------------------------
.......................................................................................................................................................................................................................GATTGCTCAAGAGAAGGAAAGGAACA.........2611.001.00---------------------------------------------------------1.00----------------------------------------------------------------------------------
..................................................................................................................................................................................CTCACTTGTGCTCTTTCTG.....................................................1911.001.00---------------------1.00----------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCAGTTT...............................................2411.00328.00-------------------------------------------------1.00------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................TGATTGCTCAAGAGAAGGAAAGGAACAT........2811.001.00-------------------------1.00------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................ACTTGTGCTCTTTCTGCAGA.................................................201.000.00--------------------1.00-----------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................TCAAGAGAAGGAAAGGAACAT........2111.001.00---------------------------------------------------------1.00----------------------------------------------------------------------------------
.......................................................................................................................................TCTGAAGGAGCAGCAGGAAGGGCGA..........................................................................................2511.001.00-------------1.00------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................TACTGATTGCTCAAGAGAAGGAAAGGAACTT........311.000.00-------------------1.00------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................CAAGAGAAGGAAAGGAACATT.......211.000.00--------------------------------------------------------------1.00-----------------------------------------------------------------------------
...........................................................................................................................................................................................................................GCTCAAGAGAAGGAAAGGAAC..........2111.001.00-----------------------------------------------------------------------1.00--------------------------------------------------------------------
..................................................................................................................................................AGCAGGAAGGGCGAGGTCTGCAA.................................................................................231.000.00---------------------------------------------------------------------------------1.00----------------------------------------------------------
.........................................................................................................................................TGAAGGAGCAGCAGGAAGGGCGAG.........................................................................................2411.001.00-----------1.00--------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCGGG.................................................2211.005.00---1.00----------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................GGGCGAGGTCTGCGGC................................................................................1611.001.00------------------------------------------------------------------------------------------------------------------1.00-------------------------
.......................................................................................................................................TCTGAAGGAGCAGCAGGAAGGGCGAGGTCTGCGGCGACCCTGGCTCACTTGTGCTCTTTCTGCAGTTT...............................................681.000.00-------------------------------------------------------------------------------------------------------------------1.00------------------------
...................................................................................................................................................................................................................TACTGATTGCTCAAGAGAAGGAAAGGACAAT........311.000.00-----------------------1.00--------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................TACTGATTGCTCAAGAGAAGGAAAGG.............2611.001.00-------------1.00------------------------------------------------------------------------------------------------------------------------------
......................................................................................................AGGACTACTTGAGAAGCT..................................................................................................................................1820.500.50----------------------------------------------------0.50---------------------------------------------------------------------------------------
........................................................................................................................................................................................TGTGCTCTTTCTGCAGT.................................................1740.250.25---------0.25----------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................GCGGCGACCCTGG........................................................................1380.250.25------------------------------------------0.12------------------------------------------------------------------------------------------------0.12
...................................................................................................................................................................................TCACTTGTGCTCTTTCT......................................................1740.250.25-----------------------------------------0.25--------------------------------------------------------------------------------------------------

Antisense strand
ACCATCTCATCAGTCCCTCCTTTCTGTAGGACTGGCCTCAGATTCATGCTCTTCCTGCCCTTGCCCCAAGCCCCAAGTGCTGGGCTCACAGCCTGCGCCAGCAGGACTACTTGAGAAGCTGTGTTCTCACCTCTCTCTGAAGGAGCAGCAGGAAGGGCGAGGTCTGCGGCGACCCTGGCTCACTTGTGCTCTTTCTGCAGTGCGGTGGTGCTACTGATTGCTCAAGAGAAGGAAAGGAACATATTTGACC
..........................................................................................................................................(((((((((.((((..((((.(((((......))).)).)))).))))))))))))).......................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormmjLiverKO1()
Liver Data. (Zcchc11 liver)
mjLiverWT1()
Liver Data. (liver)
SRR553585(SRX182791)
source: Kidney. (Kidney)
mjLiverWT3()
Liver Data. (liver)
SRR553582(SRX182788)
source: Brain. (Brain)
SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)
SRR306541(GSM750584)
19-24nt. (ago2 brain)
SRR306542(GSM750585)
19-24nt. (ago2 brain)
SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)
SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)
SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)
mjLiverKO3()
Liver Data. (Zcchc11 liver)
SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)
mjTestesWT4()
Testes Data. (testes)
mjLiverWT2()
Liver Data. (liver)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
GSM510444(GSM510444)
brain_rep5. (brain)
SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)
SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)
SRR306530(GSM750573)
19-24nt. (ago2 brain)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)
SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
SRR037906(GSM510442)
brain_rep3. (brain)
SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)
SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR073954(GSM629280)
total RNA. (blood)
SRR306535(GSM750578)
19-24nt. (ago2 brain)
SRR306537(GSM750580)
19-24nt. (ago2 brain)
SRR073955(GSM629281)
total RNA. (blood)
SRR206940(GSM723281)
other. (brain)
SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)
SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR206939(GSM723280)
other. (brain)
SRR346415(SRX098256)
source: Testis. (Testes)
SRR306534(GSM750577)
19-24nt. (ago2 brain)
SRR038744(GSM527279)
small RNA-Seq. (brain)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
SRR206941(GSM723282)
other. (brain)
SRR077866(GSM637803)
18-30 nt small RNAs. (liver)
SRR059765(GSM562827)
DN3_control. (thymus)
SRR037904(GSM510440)
brain_rep1. (brain)
SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)
SRR077864(GSM637801)
18-30 nt small RNAs. (liver)
SRR306540(GSM750583)
19-24nt. (ago2 brain)
mjTestesWT3()
Testes Data. (testes)
SRR206942(GSM723283)
other. (brain)
SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR037907(GSM510443)
brain_rep4. (brain)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)
SRR306529(GSM750572)
19-24nt. (ago2 brain)
SRR306533(GSM750576)
19-24nt. (ago2 brain)
RuiDcrWT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)
SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)
SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)
Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)
SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)
Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)
SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR095855BC3(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)
SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)
SRR065053(SRR065053)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)
SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)
SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)
mjTestesWT2()
Testes Data. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)
SRR059769(GSM562831)
Treg_Drosha. (spleen)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)
SRR306532(GSM750575)
19-24nt. (ago2 brain)
SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)
SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)
GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)
SRR065056(SRR065056)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
GSM640582(GSM640582)
small RNA in the liver with paternal control . (liver)
SRR042453(GSM539845)
mouse marginal zone B cells (spleen) [09-002]. (b cell)
SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)
SRR038741(GSM527276)
small RNA-Seq. (brain)
SRR553584(SRX182790)
source: Heart. (Heart)
SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)
SRR038743(GSM527278)
small RNA-Seq. (dicer brain)
SRR065046(SRR065046)
Tissue-specific Regulation of Mouse MicroRNA . (liver)
SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)
SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)
SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR402766(SRX117949)
source: ES PGK female cells. (ESC)
SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)
SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR306528(GSM750571)
19-24nt. (ago2 brain)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR306536(GSM750579)
19-24nt. (ago2 brain)
SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)
SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)
SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)
GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)
SRR306544(GSM750587)
19-24nt. (ago2 brain)
SRR037921(GSM510459)
e12p5_rep3. (embryo)
SRR306531(GSM750574)
19-24nt. (ago2 brain)
SRR077865(GSM637802)
18-30 nt small RNAs. (liver)
GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)
SRR065045(SRR065045)
Tissue-specific Regulation of Mouse MicroRNA . (liver)
SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR059770(GSM562832)
Treg_Dicer. (spleen)
Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
GSM361430(GSM361430)
WholeCerebellum_1month_Ptc+-_Ink4c--_rep2. (brain)
GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)
SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)
SRR037925(GSM510463)
e9p5_rep3. (embryo)
SRR014234(GSM319958)
Ovary total. (ovary)
Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
SRR039610(GSM527274)
small RNA-Seq. (brain)
SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)
SRR029123(GSM416611)
NIH3T3. (cell line)
SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)
SRR306538(GSM750581)
19-24nt. (ago2 brain)
SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)
..............................................................................................................................................................................CTGGCTCACTTGTGCTCTTTCTGCAGTG................................................ 2811.001.00-------------1.00------------------------------------------------------------------------------------------------------------------------------
............................................CATGCTCTTCCTGCCCTTGCCCCAA..................................................................................................................................................................................... 2511.001.00------------------------------------1.00-------------------------------------------------------------------------------------------------------
....................................................................................................................AGCTGTGTTCTCACCTCT.................................................................................................................... 1811.001.00---------------------------------------1.00----------------------------------------------------------------------------------------------------
....TCTCATCAGTCCCTCCTTTCTGT............................................................................................................................................................................................................................... 2311.001.00------------------------------------1.00-------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GCTCACTTGTGCTCTTTCTGCAGTGCGGT............................................ 291.000.00-------------1.00------------------------------------------------------------------------------------------------------------------------------
....TCTCATCAGTCCCTCGCAT................................................................................................................................................................................................................................... 191.000.00----------------------------------------------------------------------------1.00---------------------------------------------------------------
...................................................................................................................................................................................TCACTTGTGCTCTTTCTGCAGT................................................. 2211.001.00------------------------------------------------------------------------------------------------------------------------------1.00-------------
.CCATCTCATCAGTCCCTCCT..................................................................................................................................................................................................................................... 2011.001.00------------------------------------1.00-------------------------------------------------------------------------------------------------------
..................................................................................................................................CTCTCTCTGAAGGAGTTGG..................................................................................................... 191.000.00-------------------------------------------------------------------------------------------------------1.00------------------------------------
......................................................................................................................................................................................CTTGTGCTCTTTCTGCAGTGCGGTGG.......................................... 2611.001.00-------------------------1.00------------------------------------------------------------------------------------------------------------------
....................................................................................................................AGCTGTGTTCTCACCTCTCTCTG............................................................................................................... 2311.001.00------------------------------------1.00-------------------------------------------------------------------------------------------------------
................................................................................................................................................GCAGCAGGAAGGGCGAGGTCTG.................................................................................... 2211.001.00---------------------------------------------------------------------------1.00----------------------------------------------------------------
.CCATCTCATCAGTCCCTC....................................................................................................................................................................................................................................... 1830.330.33------------------------------------------------------------------------------------------------------------------------------------------0.33-