ID: uc008mks.1
GENE: 1700037H04Rik(1)
chr2:130972970-130973219-


(2)
AGO1.ip 		(12)
AGO2.ip 		(7)
B-CELL 		(20)
BRAIN 		(1)
CELL-LINE 		(1)
DGCR8.mut 		(9)
EMBRYO 		(7)
ESC 		(5)
FIBROBLAST 		(2)
HEART 		(1)
KIDNEY 		(4)
LIVER 		(3)
LYMPH 		(13)
OTHER 		(1)
OTHER.ip 		(5)
OTHER.mut 		(4)
PIWI.ip 		(2)
PIWI.mut 		(3)
SKIN 		(4)
SPLEEN 		(24)
TESTES 		(3)
THYMUS 		(1)
UTERUS

Sense strand
CTTCCACCTTTAGAGCCACACTGAGTTCTCAGGCCAGGGGCACATTGGCCTTATTTGAAAGGATGGGGAGTTTCTTAAGTCCTGTACCAGCTCTGTAGGGTGGGTCTCTGAAGGGACCATCTGGGGACTGTGCATGCTGGGGACAGTATGGAGGAGCTGTAGGAGATACTGATTGCCTATCCATCCCTGTCCTCCAACAGGTTACAGCATCAAGTGTGAGTACTCGGCACACAAAGAAGGTGTTCTCAAA
......................................................................................................................................((.(((((((((.(((((...((..(((......)))...))...)))))..)))))).))).))...................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		mjTestesWT3()
Testes Data. (testes)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		mjLiverWT3()
Liver Data. (liver)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR553586(SRX182792)
source: Testis. (testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		GSM640576(GSM640576)
small RNA in the liver with paternal low prot. (liver)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR028731(GSM400968)
Mili-wt-associated. (testes)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)		GSM475280(GSM475280)
Mili-IP. (mili testes)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		GSM640582(GSM640582)
small RNA in the liver with paternal control . (liver)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR073954(GSM629280)
total RNA. (blood)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)
........................................................................................................................................CTGGGGACAGTATGGAGGAGC.............................................................................................21143.0043.0020.00---2.00--3.004.001.00-1.00-----------1.00---------2.00-2.001.00---------------------1.00-----1.00--------------1.00-------1.00------1.00----------1.00-
........................................................................................................................................................................................................................TGAGTACTCGGCACACAAAGAAGGTGT.......27125.0025.00-8.005.00--3.003.00---1.00------1.00-------1.00----------------------------------------1.00-1.00---------1.00----------------------------
........................................................................................................................................CTGGGGACAGTATGGAGGAG..............................................................................................20119.0019.00--------3.00-1.00--4.00-----3.00---------1.00----2.00------1.00-1.00-----------1.00---------------------------1.00----1.00------------------
.............................................................................................................................................................................................................................ACTCGGCACACAAAGAAGGTGT.......22110.0010.00---5.002.00------2.00---------------------------1.00-------------------------------------------------------------------
..........................................................................................................................................................................................................TACAGCATCAAGTGTGAGTACTCGGCA.....................27110.0010.00-6.001.00--1.00----1.00--------------1.00---------------------------------------------------------------------------------
.................................................................................................................................................................................TATCCATCCCTGTCCTCCAACAGT.................................................2419.001.00-----------1.00---------3.00------------------------2.00-------------------------1.00----1.00--------------------------1.00--
.............................................................................................................................................................................................................................ACTCGGCACACAAAGAAGGT.........2018.008.00---3.002.00-------1.00----------------1.00---------1.00-------------------------------------------------------------------
........................................................................................................................................................................................................................TGAGTACTCGGCACACAAAGAAGGTGTT......2818.008.00-1.003.00---2.00---1.00------1.00-----------------------------------------------------------------------------------------
......................................................................................................................................TGCTGGGGACAGTATGGAGGAG..............................................................................................2218.008.00---------1.00----------4.00-------1.00---1.00--------------------------------------------------------------1.00-----------
.......................................................................................................................................GCTGGGGACAGTATGGAGGAG..............................................................................................2117.007.00----------1.00-----------------------1.00-------------1.00-1.00--1.00------------------------------------1.00-----------1.00----
......................................................................................................................................................................................................................TGTGAGTACTCGGCACACAAAGAAGGT.........2715.005.00--2.00--2.00------------1.00----------------------------------------------------------------------------------------
........................................................................................................................................................................................................................TGAGTACTCGGCACACAAAGAAGGT.........2515.005.00-----1.00------------1.00-------1.00----------1.00-------------1.00-------------------------------------------------------
........................................................................................................................................................................................................................TGAGTACTCGGCACACAAAGAAGGTG........2615.005.00-2.001.00----------------------------------1.00----------------------------------------------------------1.00----------
......................................................................................................................................TGCTGGGGACAGTATGGAG.................................................................................................1915.005.00-------------------------------2.00------------2.00-----------------------------------------1.00--------------------
......................................................................................................................................TGCTGGGGACAGTATGGAGGAGC.............................................................................................2314.004.001.00--------------3.00-------------------------------------------------------------------------------------------
.......................................................................................................................................GCTGGGGACAGTATGGAGGAGC.............................................................................................2214.004.00-------2.00------------------------1.00---------------------------------------------------1.00----------------------
.......................................................................................................................................GCTGGGGACAGTATGGAGGA...............................................................................................2014.004.00-------------------------------1.00---------1.00---------------------1.00---------1.00---------------------------------
.............................................................................................................................................................................................................................ACTCGGCACACAAAGAAGGTGTTCT....2514.004.00----2.00----1.00--1.00----------------------------------------------------------------------------------------------
.................................................................................................................................................GTATGGAGGAGCTGTAGGA......................................................................................1913.003.00------------------------3.00----------------------------------------------------------------------------------
...........................................................................................................CTGAAGGGACCATCTAGAC............................................................................................................................193.000.00---1.00----------2.00--------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................TGAGTACTCGGCACACAAAGAAGGTGTTC.....2913.003.00--2.00--1.00-----------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................TGTGAGTACTCGGCACACAAAGAAGGTGT.......2913.003.00--1.00---1.00------------------------------------------------------------------------------1.00---------------------
........................................................................................................................................CTGGGGACAGTATGGAGGA...............................................................................................1913.003.00-----------------------------------------------1.00-------------------1.00--------1.00------------------------------
........................................................................................................................................CTGGGGACAGTATGGAGG................................................................................................1813.003.00---------------------------1.00-------------------------1.00----------------------------------------------1.00------
...........................................................................................................................................................................................................ACAGCATCAAGTGTGAGT.............................1822.502.50---0.50-------0.501.50----------------------------------------------------------------------------------------------
........................................................................................................................................CTGGGGACAGTATGGAGGAGCT............................................................................................2212.002.00-------------------------------------------------------1.00---------------------------------1.00-----------------
......................................................................................................................................................................................................................TGTGAGTACTCGGCACACAAAGAAGGTG........2812.002.00-1.00---1.00-----------------------------------------------------------------------------------------------------
........................................................................................................................................CTGGGGACAGTATGGAGGAT..............................................................................................2012.003.00-------------------1.00---------------------------1.00-----------------------------------------------------------
......................................................................................................................................TGCTGGGGACAGTATGGAGGAGT.............................................................................................2312.008.00------------------------------------2.00----------------------------------------------------------------------
.............................................................................................................................................................................................................................ACTCGGCACACAAAGAAGGTGTTCTC...2612.002.00---1.00--------1.00----------------------------------------------------------------------------------------------
........................................................................................................................................CTGGGGACAGTATGGAGGAGCTAT..........................................................................................2412.002.001.00------------------------------------------------------------------------------------------------------1.00---
......................................................................................................................................TGCTGGGGACAGTATGGAGGA...............................................................................................2112.002.00--------------------------------------------------------1.00----------------------------------------1.00---------
.....................................................................................................................................ATGCTGGGGACAGTATGGAGGA...............................................................................................2212.002.00----------------1.00-------------------------------------1.00----------------------------------------------------
........................................................................................................................................CTGGGGACAGTATGGAGGAGCTAAGA........................................................................................2612.002.00-----------------------2.00-----------------------------------------------------------------------------------
......................................................................................................................................TGCTGGGGACAGTATGGAGGAGA.............................................................................................2312.008.00-------2.00---------------------------------------------------------------------------------------------------
.....................................................................................................................................ATGCTGGGGACAGTATGGAG.................................................................................................2012.002.00-------------------------------------------------2.00---------------------------------------------------------
..........................................................................................................................................................................................................TACAGCATCAAGTGTGAGTACTCGGC......................2612.002.00----------1.00----------------------------------------------------------1.00-------------------------------------
.....................................................................................................................................ATGCTGGGGACAGTATGGAGGAGC.............................................................................................2412.002.001.00--------------1.00-------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................TGTGAGTACTCGGCACACAAAGAAGG..........2612.002.00----------------------2.00------------------------------------------------------------------------------------
.........................................................................................................................................TGGGGACAGTATGGAGGAGC.............................................................................................2012.002.00---------1.00----------------------1.00--------------------------------------------------------------------------
...........................................................................................................CTGAAGGGACCATCTAGA.............................................................................................................................182.000.00----1.00---------1.00--------------------------------------------------------------------------------------------
........................................................................................................................................CTGGGGACAGTATGGAGGAGA.............................................................................................2112.0019.00---------------------------------1.00-------------------------------------1.00-----------------------------------
.........................................................................................................................................TGGGGACAGTATGGAGGAGT.............................................................................................202.000.00--------------------------------------2.00--------------------------------------------------------------------
....................................................................................................................................................................................................................AGTGTGAGTACTCGGCACACAAAGAAGGTGT.......3111.001.00-------------------------1.00---------------------------------------------------------------------------------
.......................................................................................................................................GCTGGGGACAGTATGGAGG................................................................................................1911.001.00---------------------------------------------------------1.00-------------------------------------------------
........................................................................................................................................CTGGGGACAGTATGGAGGAGCGAAA.........................................................................................2511.0043.001.00----------------------------------------------------------------------------------------------------------
......................................................................................................................................TGCTGGGGACAGTATGGA..................................................................................................1811.001.00--------------------------------------------------------------------------------------------------1.00--------
.....................................................................................................................................ATGCTGGGGACAGTATGGAGGAAAA............................................................................................2511.002.00----------------1.00------------------------------------------------------------------------------------------
........................................................................................................................................CTGGGGACAGTATGGAGGAGCTAAG.........................................................................................2511.002.001.00----------------------------------------------------------------------------------------------------------
................................................................................................................................................................................CTATCCATCCCTGTCCTCCAACT...................................................231.000.00------------------------------1.00----------------------------------------------------------------------------
...........................................................................................................................................................................................................................GTACTCGGCACACAAAGAAGGTGTTCTC...2811.001.00-----------------1.00-----------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................GTGAGTACTCGGCACACAAAGAAGGT.........2611.001.00---------------------------------------------1.00-------------------------------------------------------------
...........................................................................................................................................................................................................ACAGCATCAAGTGTGAGTACTCGGCA.....................2611.001.00----------------------------------------------------1.00------------------------------------------------------
................................................................................................................................................AGTATGGAGGAGCTGTAGGAG.....................................................................................2111.001.00--------------------------------------------------------------------------------------------1.00--------------
........................................................................................................................................................................................................................TGAGTACTCGGCACACAAAGA.............2111.001.00-----------------------------1.00-----------------------------------------------------------------------------
................................................................................................................................................................................CTATCCATCCCTGTCCTCCAACA...................................................2311.001.00------------------------------------------------------------1.00----------------------------------------------
..........................................................................................................................................................................................................TACAGCATCAAGTGTGAGTACTCGGCAC....................2811.001.00------1.00----------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................TACAGCATCAAGTGTGAGT.............................1911.001.00---1.00-------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................CTCGGCACACAAAGAAGGT.........1911.001.00---1.00-------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TATCCATCCCTGTCCTCCAACAGC.................................................2411.001.00--------------------------------------------------------------------------1.00--------------------------------
...............................................................................................................................................................................CCTATCCATCCCTGTCCTCCAAT....................................................231.000.00---------------------------------------------------------------------------1.00-------------------------------
........................................................................................................................................CTGGGGACAGTATGGAGGAGTAA...........................................................................................2311.0019.00--------------------------------------------------------------1.00--------------------------------------------
..................................................................................................................................................TATGGAGGAGCTGTAGGAGA....................................................................................2011.001.001.00----------------------------------------------------------------------------------------------------------
........................................................................................................................................CTGGGGACAGTATGGAGGAGCAT...........................................................................................2311.0043.001.00----------------------------------------------------------------------------------------------------------
.......................................................................................................................................GCTGGGGACAGTATGGAGGAGCA............................................................................................2311.004.00------------------------------------------------1.00----------------------------------------------------------
.....................................................................................................................................ATGCTGGGGACAGTATGGAGGAGA.............................................................................................2411.001.00----------------1.00------------------------------------------------------------------------------------------
................................................................................................................................................AGTATGGAGGAGCTGTAGGAGA....................................................................................2211.001.00------------------------------------------1.00----------------------------------------------------------------
.................................................................................................................................................................................TATCCATCCCTGTCCTCCAACAG..................................................2311.001.001.00----------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGGGGACAGTATGGAGGAGCTG...........................................................................................2211.001.001.00----------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................GCACACAAAGAAGGTGTTCTC...2111.001.00---------------------------------------------------------------------------------------------------1.00-------
.................................................................................................................................................................................TATCCATCCCTGTCCTCCAAAAGT.................................................241.000.00---------------------1.00-------------------------------------------------------------------------------------
.......................................................................................................................................GCTGGGGACAGTATGGAGGAGAAA...........................................................................................2411.007.00---------------------------1.00-------------------------------------------------------------------------------
........................................................................................................................................CTGGGGACAGTATGGAGGAGCGA...........................................................................................2311.0043.001.00----------------------------------------------------------------------------------------------------------
...........................................................................................................CTGAAGGGACCATCTAT..............................................................................................................................171.000.00--------------------------------------------------------------------------------1.00--------------------------
........................................................................................................................................CTGGGGACAGTATGGAGGAGCTGA..........................................................................................241.000.001.00----------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................TATCCATCCCTGTCCTCCAAC....................................................2111.001.00------------------------------1.00----------------------------------------------------------------------------
.........TTAGAGCCACACTGAAC................................................................................................................................................................................................................................171.000.00----------------------------------------1.00------------------------------------------------------------------
..........................................................................................................TCTGAAGGGACCATCTAGAC............................................................................................................................201.000.00---------1.00-------------------------------------------------------------------------------------------------
....................................................................................................................................................TGGAGGAGCTGTAGGAGATA..................................................................................2011.001.00----------------1.00------------------------------------------------------------------------------------------
......................................................................................................................................TGCTGGGGACAGTATGGAGGAC..............................................................................................2211.002.00--------------------------------------------------1.00--------------------------------------------------------
.........................................................................................................................................TGGGGACAGTATGGAGGAGCTA...........................................................................................221.000.001.00----------------------------------------------------------------------------------------------------------
............................................................................................................................................GGACAGTATGGAGGAGCTGTAGG.......................................................................................2311.001.00----------------------------------------------------1.00------------------------------------------------------
......................................................................................................................ATCTGGGGACTGTGCAGGCG................................................................................................................201.000.00-------------------------------------------1.00---------------------------------------------------------------
.............................................................................................................................................................................TGCCTATCCATCCCTGTCCTCC.......................................................2211.001.00-------------------------------------------------------------1.00---------------------------------------------
........................................................................................................................................CTGGGGACAGTATGGAGGCTCC............................................................................................2211.003.00---------------------------1.00-------------------------------------------------------------------------------
...............................................................................................................................................................................................................................TCGGCACACAAAGAAGGTGTTCTC...2411.001.00-1.00---------------------------------------------------------------------------------------------------------
................................................................................................................GGGACCATCTGGGGACTCGG......................................................................................................................201.000.00-----------------------------------------------------------------1.00-----------------------------------------
........................................................................................................................................CTGGGGACAGTATGGAGGAGCTGT..........................................................................................2411.001.00-----------------------------------1.00-----------------------------------------------------------------------
........................................................................................................................................CTGGGGACAGTATGGAGGAGCTA...........................................................................................2311.002.00----------------------------1.00------------------------------------------------------------------------------
........................................................................................................................................................................................................................TGAGTACTCGGCACACAAAGAAGGTGCT......2811.005.00-1.00---------------------------------------------------------------------------------------------------------
......................................................................................................................................................GAGGAGCTGTAGGAGATACTGATTGC..........................................................................2611.001.00--------------------------1.00--------------------------------------------------------------------------------
........................................................................................................................................CTGGGGACAGTATGGAGGATAT............................................................................................2211.003.00---------------------------------------------------------------------------------------------1.00-------------
........................................................................................................................................CTGGGGACAGTATGGAGGAGT.............................................................................................2111.0019.00----------------------------1.00------------------------------------------------------------------------------
...............................................................................................................................................................................CCTATCCATCCCTGTCCTCC.......................................................2011.001.00----------------------------------------------------------------------------------1.00------------------------
.................................................................................................................................................................................TATCCATCCCTGTCCTCCATT....................................................211.000.00------------------------------1.00----------------------------------------------------------------------------
....................................................................................................................................................TGGAGGAGCTGTAGGAGATACTGATTGC..........................................................................2811.001.00------------------------------------------1.00----------------------------------------------------------------
.....................................................................................................................................ATGCTGGGGACAGTATGGAGG................................................................................................2111.001.001.00----------------------------------------------------------------------------------------------------------
...........................................................................................................................GGGACTGTGCATGCTGCT.............................................................................................................181.000.00------------1.00----------------------------------------------------------------------------------------------
.....................................................................................................................................ATGCTGGGGACAGTATGGAGGAG..............................................................................................2311.001.00-------------------------------------------------------------------------------------------1.00---------------
........................................................................................................................................................................................................................TGAGTACTCGGCACACAAAGAAGGTGC.......2711.005.00------------------1.00----------------------------------------------------------------------------------------
........................................................................................................................................CTGGGGACAGTATGGACGAT..............................................................................................201.000.00-------------1.00---------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................TGAGTACTCGGCACACAAAGAAGG..........2411.001.00--------------------------1.00--------------------------------------------------------------------------------
...................................................................................................GTGGGTCTCTGAAGGGGA.....................................................................................................................................181.000.00-----------------------------------------------------------1.00-----------------------------------------------
...........................................................................................................CTGAAGGGACCATCTGT..............................................................................................................................171.000.00----------------------------------------1.00------------------------------------------------------------------

Antisense strand
CTTCCACCTTTAGAGCCACACTGAGTTCTCAGGCCAGGGGCACATTGGCCTTATTTGAAAGGATGGGGAGTTTCTTAAGTCCTGTACCAGCTCTGTAGGGTGGGTCTCTGAAGGGACCATCTGGGGACTGTGCATGCTGGGGACAGTATGGAGGAGCTGTAGGAGATACTGATTGCCTATCCATCCCTGTCCTCCAACAGGTTACAGCATCAAGTGTGAGTACTCGGCACACAAAGAAGGTGTTCTCAAA
......................................................................................................................................((.(((((((((.(((((...((..(((......)))...))...)))))..)))))).))).))...................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		mjTestesWT3()
Testes Data. (testes)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		mjLiverWT3()
Liver Data. (liver)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR553586(SRX182792)
source: Testis. (testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		GSM640576(GSM640576)
small RNA in the liver with paternal low prot. (liver)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR028731(GSM400968)
Mili-wt-associated. (testes)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)		GSM475280(GSM475280)
Mili-IP. (mili testes)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		GSM640582(GSM640582)
small RNA in the liver with paternal control . (liver)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR073954(GSM629280)
total RNA. (blood)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)
.......................................................................................................................................................................................TCCCTGTCCTCCAACAGGTTACAGCA......................................... 2612.002.00--------------------------------------------------------1.00--------------------------------------------1.00-----
......................................................................TTTCTTAAGTCCTGTACCAGCTCTGTA......................................................................................................................................................... 2712.002.00---------------------------------------------1.00-----1.00-------------------------------------------------------
.............................................................................................................................................................................................TCCTCCAACAGGTTACAGCATCAAGTG.................................. 2711.001.00------------------------------------------------------1.00----------------------------------------------------
......................................................................................................................................................................................ATCCCTGTCCTCCAACAGGTT............................................... 2111.001.00--------------1.00--------------------------------------------------------------------------------------------
............................................................................AAGTCCTGTACCAGCTCTGT.......................................................................................................................................................... 2011.001.00---------1.00-------------------------------------------------------------------------------------------------
........................................................................................................................................................................CTGATTGCCTATCCATCCCTGTCCTC........................................................ 2611.001.00-----------------1.00-----------------------------------------------------------------------------------------
..............GCCACACTGAGTTCTCAGGCCA...................................................................................................................................................................................................................... 2211.001.00----------------------------------------------------------------------1.00------------------------------------
.....................................................................GTTTCTTAAGTCCTGTACCAGCTCTGTA......................................................................................................................................................... 2811.001.00------------------1.00----------------------------------------------------------------------------------------
..................................................................GGAGTTTCTTAAGTCCTGTACCAGCTCT............................................................................................................................................................ 2811.001.00----------------------1.00------------------------------------------------------------------------------------
..............................................................ATGGGGAGTTTCTTAAGTCCTGT..................................................................................................................................................................... 2311.001.00-----------1.00-----------------------------------------------------------------------------------------------
..............................................................................................................................................................................GCCTATCCATCCCTGTCCT......................................................... 1911.001.00---------------------------------------------------------------------------------1.00-------------------------
..................................................................................................................................................................................ATCCATCCCTGTCCTCCAAC.................................................... 2011.001.00--------------1.00--------------------------------------------------------------------------------------------
...........................CTCAGGCCAGGGGCACATTGGCCTTATTTGAAAGGATGGGGAGTTTCTTAAGTCCTGTACCAGCTCTGTAGGGTGGGTCTTTT............................................................................................................................................ 831.000.00----------------------------------------------------------------------------------------------------------1.00