ID: uc008luw.12
GENE: Mapkbp1(12)
chr2:119842952-119843366+


(1)
AGO.mut 		(2)
AGO1.ip 		(12)
AGO2.ip 		(2)
AGO3.ip 		(8)
B-CELL 		(23)
BRAIN 		(6)
CELL-LINE 		(1)
DCR.mut 		(1)
DGCR8.mut 		(5)
EMBRYO 		(10)
ESC 		(3)
FIBROBLAST 		(2)
KIDNEY 		(2)
LIVER 		(1)
LUNG 		(4)
LYMPH 		(16)
OTHER 		(8)
OTHER.mut 		(1)
PANCREAS 		(5)
PIWI.ip 		(2)
PIWI.mut 		(4)
SKIN 		(9)
SPLEEN 		(1)
TDRD1.ip 		(26)
TESTES 		(2)
THYMUS 		(1)
TOTAL-RNA

Sense strand
GCAGACACTGGATGAGCATTCATCTTCCATCACTGCTGTCAAGTTTGCAGGTGGGGACTGGGCAATTGAAGCTATTCATCCCTCTACCTACCACCTACATTTATGAGAAGAGTTTGCTGGGAAGGATTGGGAGGTACCCGGGAGTCATGAGGCTAGGTAGGAAGGCAGGTGAAATATAGACTTTCAGTCTAGGGGACCCTGAGCCAGACTGAGGGCTGAGGAGGGGGTGCATGGGTTTTGTGGGATGCACTCTGTTTTATTTGGTTGGTCCACCATGTAGAGTAGCTCCATTGGGGAAAATAAGGGAAGGCAGGAGAAAGGCTGCCTTCATATGGTGGAAGCAGCCAGGTCCCTGTCCCCTACAGCCAGTGATGGGCAAGTGCGAATGATCAGCTGTGGTGCAGACAAGAGCATT
..............................................................................................................................................................................................................................................................................................................((((..((((((.((..((((((.(((((...))))).))))))...))))))))))))......................................................
........................................................................................................................................................................................................................................................................................................297.................................................................365................................................
SizePerfect hitTotal NormPerfect NormSRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR073954(GSM629280)
total RNA. (blood)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR059771(GSM562833)
CD4_control. (spleen)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR038741(GSM527276)
small RNA-Seq. (brain)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)		SRR023847(GSM307156)
mESv6.5smallrna_rep1. (cell line)		SRR206942(GSM723283)
other. (brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR206941(GSM723282)
other. (brain)		SRR065053(SRR065053)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR060845(GSM561991)
total RNA. (brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR014229(GSM319953)
10 dpp MILI. (mili testes)		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR042453(GSM539845)
mouse marginal zone B cells (spleen) [09-002]. (b cell)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		SRR553586(SRX182792)
source: Testis. (testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		mjTestesWT3()
Testes Data. (testes)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		GSM475281(GSM475281)
total RNA. (testes)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR059768(GSM562830)
Treg_control. (spleen)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTGC..........................................................................................24128.0028.003.002.007.00---3.002.00---4.001.00----1.00---1.001.00--1.00--1.00-----------------------------------1.00----------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTG...........................................................................................23127.0027.00-5.00-2.001.00----1.002.00---1.002.00--1.002.00--1.001.00--------1.00----1.00-1.00---1.00-------1.00--------------------1.00---1.00-------------------------1.00--------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCT............................................................................................22118.0018.001.002.001.00-1.00---1.001.00----------------1.00----1.001.00-------1.00----1.00-1.00------------1.00--------1.00--------1.00-----1.00----1.00---------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTGA..........................................................................................24115.0027.002.00-3.00-1.00-1.00--1.00----1.00-1.00--1.00----------1.00---------1.00--------------------------------1.00----------------------1.00--------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTGT..........................................................................................24113.0027.00-1.00-1.00---1.001.001.00--1.00--2.00-----------2.00---1.00---------------------------1.00---------------1.00-----------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGG..............................................................................................20212.0012.005.00-0.50-----0.50--1.00--0.50----0.50-----0.50-----------1.00--------------0.50----------------------------------------------------0.50------0.50--0.500.50------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAG...............................................................................................19210.0010.007.50-----------------0.50------------------------------1.00----0.50----------------------------------------------------0.50---------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGC.............................................................................................2126.506.501.00-1.50-----0.50------0.50----0.50--------------------------0.50--0.50------------------------------------------------------0.50----0.50--0.50---------
..............................................................................................................................................................................................................................................................................................................AGGGAAGGCAGGAGAAAGGCT............................................................................................2116.006.00----1.00------------1.00-----------------------2.00-------------------------1.00-----------------------------------1.00-------------------
...................................................................................................................................................................................................................................................................................................................................................................................................GATCAGCTGTGGTGCAGACAAGAGC...2515.005.00------------------------3.00-------------------2.00------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCTGTGGTGCAGACAAGAG....2315.005.00-----5.00---------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTGAT.........................................................................................2515.0027.00----------3.00-----1.00------------------------------------------------------1.00---------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTGAA.........................................................................................2514.0027.00---1.001.00-----------1.00---------------------------------------------------------------------------1.00------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTAT..........................................................................................2414.0018.00--------------1.00--1.00-------------------------1.00-----------------------------------------1.00-------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTGCA.........................................................................................2513.0028.00-1.001.00-------------1.00----------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTTT..........................................................................................2413.0018.00----------------------1.00---------------------------------------------------------------1.00-------------------1.00----------------
..............................................................................................................................................................................................................................................................................................................AGGGAAGGCAGGAGAAAGGCTG...........................................................................................2213.003.00-----------------------------2.00--------------------------------------------------1.00------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGA..............................................................................................2022.5010.001.50-0.50------------------------------------------------0.50-----------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................TAAGGGAAGGCAGGAGAAAGG..............................................................................................2112.002.00----------------------------1.00----------------------------1.00-----------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTAAA.........................................................................................2512.0018.00--------------------------1.00---------------------------------------------------------------1.00--------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTGCT.........................................................................................2512.0028.00---1.00---1.00-------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................AGGGAAGGCAGGAGAAAGGCTGAA.........................................................................................2412.003.00-------1.00--------------------------------------------------------------------------------1.00----------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTGCC.........................................................................................2512.002.00---------------------1.00--------------------1.00--------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................GCAAGTGCGAATGATCAGCTGTGGTGCA............2812.002.00--------------------------------------2.00------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................AGGGAAGGCAGGAGAAAGGCTGA..........................................................................................2312.003.00-1.00-----------1.00-------------------------------------------------------------------------------------------------------------
...................................................................................................................GCTGGGAAGGATTGGGGGC.........................................................................................................................................................................................................................................................................................191.000.00------------------------------------1.00--------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................GGGAAAATAAGGGAATGC........................................................................................................181.000.00--------------------------------------------------------------------------------------------------1.00------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAA................................................................................................1821.001.000.50----------------------------------------------------0.50---------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................AGGGAAGGCAGGAGAAAGGCTGT..........................................................................................2311.003.00----------------------------------1.00----------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................AGGGAAGGCAGGAGAAAGGCTGTAG........................................................................................2511.003.00-----------------1.00---------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................AGGGAAGGCAGGAGAAAGGCTGAGT........................................................................................2511.003.00------------------------------1.00--------------------------------------------------------------------------------------------
................................................................................................ACATTTATGAGAAGAGTTTGCTGGG......................................................................................................................................................................................................................................................................................................2511.001.00--------------1.00------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................AGTCTAGGGGACCCTGAGCCAGACTGAGGG........................................................................................................................................................................................................3011.001.00-------------------------------------------------------------------------------------------------1.00-------------------------
................................................................................................................................................................................................................................................................................................................................................................................................AATGATCAGCTGTGGTGCAGACAAGAGC...2811.001.00--------------------------------------------------------------------------1.00------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTGTTAA.......................................................................................2711.0027.00----------------------------------------------------------1.00----------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................AGCCAGGTCCCTGTCCCCTACAGA.................................................241.000.00--------------------------------------------------------1.00------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGCTGTGGTGCAGACAAGAGCATT2911.001.00----------------------------------------------------------------------------------1.00----------------------------------------
..................................................GTGGGGACTGGGCAATTGAAGCTATTCATCCCTCTACCTACCACCTACATTTATGAGAAGAGTTTGCTGGGAAGGATTGGGAGGTACC.....................................................................................................................................................................................................................................................................................8811.001.00---------------------------------------------------------------1.00-----------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTGCCCTT......................................................................................2811.002.00------------1.00--------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................................GCAAGTGCGAATGATCAGCTGTGGT...............2511.001.00----------------------------------------------------------------------------------------------------1.00----------------------
............................................................................................................................................................................................................................................................................................................TAAGGGAAGGCAGGAGAAAGGA.............................................................................................2211.002.00--------1.00------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................GGGAAGGCAGGAGAAAGGCTGC..........................................................................................2211.001.00-------------1.00-------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTTG..........................................................................................2411.0018.00------------1.00--------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTGCCATT......................................................................................2811.002.00------------------1.00--------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................CGAATGATCAGCTGTGGTGCAGACAAG......2711.001.00-----------------------------------------------------------------------------1.00---------------------------------------------
..............................................................................................................................................................................................................................................................................................................AGGGAAGGCAGGAGAAAGGCTGAAA........................................................................................2511.003.00---------------------------------------------1.00-----------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................GGAAGGCAGGAGAAAGGCTGC..........................................................................................2111.001.00-------------------------------------------------------------------------------1.00-------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGA.............................................................................................2121.0012.00-------------------------------------------------0.50-----------------------------------------------------------0.50-------------
..................................................................................................................................................................................................................................................................................................................................................................................................TGATCAGCTGTGGTGCAGACAAGAGCAT.2811.001.00---------------------------------------------------------------------------------------------1.00-----------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTGTAA........................................................................................2611.0027.00-1.00-------------------------------------------------------------------------------------------------------------------------
....ACACTGGATGAGCATTCAT........................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00-1.00-------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................AGCCAGGTCCCTGTCCCCTACTA..................................................2311.001.00------------------------------------------------------1.00--------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTA...........................................................................................2311.0018.001.00--------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTAA..........................................................................................2411.0018.00------------1.00--------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................AGGGAAGGCAGGAGAAAGG..............................................................................................1941.001.00----------------------------0.25-------------------------------------------------------------------------------------0.50-----0.25--
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTGGAG........................................................................................2611.0027.00-----------------------------------------------------------------------------------------------------1.00---------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTGCAA........................................................................................2611.0028.00---------------------------------------1.00-----------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTGCCAT.......................................................................................2711.002.00---1.00-----------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTTA..........................................................................................2411.0018.00--1.00------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTGAAA........................................................................................2611.0027.00----1.00----------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCTGTGGTGCAGACAAGTG....231.000.00-----1.00---------------------------------------------------------------------------------------------------------------------
..................................................GTGGGGACTGGGCAATTGAAGCT......................................................................................................................................................................................................................................................................................................................................................2311.001.00----------------------------------------------------------------------------------------------1.00----------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................CAGCTGTGGTGCAGACAAGAG....2111.001.00----------------------------------------------------1.00----------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTGCCTTT......................................................................................281.000.00-------------------------1.00-------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................CAGCCAGGTCCCTGTCCCCTAG....................................................221.000.00------------------------------------------------------------------1.00--------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................AGTGCGAATGATCAGCTGTGGTGCAGACA........2911.001.00------------------------------------------1.00--------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................CAGCCAGGTCCCTGTCCCCTAC....................................................2211.001.00-----------------------------------1.00---------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................ATAAGGGAAGGCAGGAGAAAGG..............................................................................................2211.001.00--------1.00------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTGG..........................................................................................2411.0027.00---1.00-----------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................AATGATCAGCTGTGGTGCAGACAAGAGAAA.301.000.00-------------------------------------------------------------------------------------------1.00-------------------------------
...............................................................................................................................................................................................................................................................................................................GGGAAGGCAGGAGAAAGGCTGCA.........................................................................................2311.001.00-------------1.00-------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCTGTGGTGCAGACAAGAGCAT.2611.001.00---1.00-----------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................AGGGAAGGCAGGAGAAAGGCTGCAAA.......................................................................................2611.001.00-------------------------------------------------------------1.00-------------------------------------------------------------
............................................................................................................................................................................................................................................................................................................TAAGGGAAGGCAGGAGAAAGGCTGC..........................................................................................2511.001.00---------------------------------------------------------------------------------1.00-----------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTGTAT........................................................................................2611.0027.00-----------------------1.00---------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTGAAAA.......................................................................................2711.0027.00----------------------------------------------1.00----------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTGCTTTT......................................................................................2811.0028.00---1.00-----------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCTGTGGTGCAGACAAGA.....2211.001.00---------------------------------1.00-----------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................GGAAGGCAGGAGAAAGGCTG...........................................................................................2011.001.00-------------1.00-------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTAATT........................................................................................2611.0018.00------1.00--------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................TGGGCAAGTGCGAATGATCAGCTGT..................2511.001.00--------------------------------------------------------------------------------------------------------1.00------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTGAATT.......................................................................................2711.0027.00---------1.00-----------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTT...........................................................................................2311.0018.00------------------------------------------------1.00--------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................AGGGAAGGCAGGAGAAAGGCTGC..........................................................................................2311.001.00---------------------------------------------------------------------------------------------------1.00-----------------------
..................................................................................................................................................................................................................................................................................................................AAGGCAGGAGAAAGGCTGCCT........................................................................................2111.001.00--------------------------------------------------1.00------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................AGCCAGGTCCCTGTCCCCTACA...................................................2211.001.00-----------------------1.00---------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAACGGA.............................................................................................211.000.00-----------------------------------1.00---------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................CAGCCAGTGATGGGCAAGTGCGAATGA..........................2711.001.00---------------------------------------------------------------------------------------1.00-----------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTGATAT.......................................................................................2711.0027.00-----------------------------------------------------------------------------------1.00---------------------------------------
......................................................................................................................................................................................................................................................................................................................................................AGCCAGGTCCCTGTCCCCTAC....................................................2111.001.00------------------1.00--------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................GCGAATGATCAGCTGTGGT...............1911.001.00-----------------------------------------------------------------------------------------------1.00---------------------------
.......................................................................................................................................ACCCGGGAGTCATGACGG......................................................................................................................................................................................................................................................................181.000.00----------------------------------1.00----------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCTGCATT.......................................................................................2711.0028.00-1.00-------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................TGGGCAAGTGCGAATGGTG........................191.000.00-------------------------------------------------------1.00-------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................GAGAAAGGCTGCCTTACG....................................................................................181.000.00-1.00-------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................GAATGATCAGCTGTGGTGCA............2011.001.00---------------------------------1.00-----------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAAG..............................................................................................2020.501.000.50--------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGATA............................................................................................2220.5010.00---------------------------------------------------------------------------------------------------------------0.50-----------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGT..............................................................................................2020.5010.00--------------------------0.50------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGAA............................................................................................2220.5012.00---------------------------------------------------------------------------------------------------------------------0.50-----
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCAA...........................................................................................2320.506.50-------0.50-------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGTTAA..........................................................................................2420.5012.00----------------------------------------------0.50----------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGAAA...........................................................................................2320.5012.00---------------------------0.50-----------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGCAG...........................................................................................2320.506.50----------------------------------------------------------------------------------------------------------------------0.50----
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAA...............................................................................................1920.501.00------0.50--------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................AAGGGAAGGCAGGAGAAAGGTAA...........................................................................................2320.5012.00------------------------------------------------0.50--------------------------------------------------------------------------
..................................................................................................................................................................................................................GAGGGCTGAGGAGGGGG............................................................................................................................................................................................1740.250.25-----------------------------------------------------------------------------------------------------------------------0.25---
..............................................................................................................................................................................................................................................................................................................AGGGAAGGCAGGAGAAAGGG.............................................................................................2040.251.00-----------------------------0.25---------------------------------------------------------------------------------------------
.................................................GGTGGGGACTGGGCA...............................................................................................................................................................................................................................................................................................................................................................15100.200.20-------------------------------------------------------------------------------------------------------------------------0.20-
...................................................................................................................................................................................................................AGGGCTGAGGAGGGGG............................................................................................................................................................................................16100.100.10-------------------------------------------------------0.10-------------------------------------------------------------------

Antisense strand
GCAGACACTGGATGAGCATTCATCTTCCATCACTGCTGTCAAGTTTGCAGGTGGGGACTGGGCAATTGAAGCTATTCATCCCTCTACCTACCACCTACATTTATGAGAAGAGTTTGCTGGGAAGGATTGGGAGGTACCCGGGAGTCATGAGGCTAGGTAGGAAGGCAGGTGAAATATAGACTTTCAGTCTAGGGGACCCTGAGCCAGACTGAGGGCTGAGGAGGGGGTGCATGGGTTTTGTGGGATGCACTCTGTTTTATTTGGTTGGTCCACCATGTAGAGTAGCTCCATTGGGGAAAATAAGGGAAGGCAGGAGAAAGGCTGCCTTCATATGGTGGAAGCAGCCAGGTCCCTGTCCCCTACAGCCAGTGATGGGCAAGTGCGAATGATCAGCTGTGGTGCAGACAAGAGCATT
..............................................................................................................................................................................................................................................................................................................((((..((((((.((..((((((.(((((...))))).))))))...))))))))))))......................................................
........................................................................................................................................................................................................................................................................................................297.................................................................365................................................
SizePerfect hitTotal NormPerfect NormSRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR073954(GSM629280)
total RNA. (blood)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR059771(GSM562833)
CD4_control. (spleen)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR038741(GSM527276)
small RNA-Seq. (brain)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)		SRR023847(GSM307156)
mESv6.5smallrna_rep1. (cell line)		SRR206942(GSM723283)
other. (brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR206941(GSM723282)
other. (brain)		SRR065053(SRR065053)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR060845(GSM561991)
total RNA. (brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR014229(GSM319953)
10 dpp MILI. (mili testes)		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR042453(GSM539845)
mouse marginal zone B cells (spleen) [09-002]. (b cell)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		SRR553586(SRX182792)
source: Testis. (testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		mjTestesWT3()
Testes Data. (testes)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		GSM475281(GSM475281)
total RNA. (testes)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR059768(GSM562830)
Treg_control. (spleen)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)
..................................................................................................................................................................................................GACCCTGAGCCAGACGGT........................................................................................................................................................................................................... 181.000.00-------------1.00-------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................GGTCCCTGTCCCCTACGCG................................................. 191.000.00----------------------------------------------------------------------1.00----------------------------------------------------
.......CTGGATGAGCATTCATCT...................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00-----------------------------------------------------------------1.00---------------------------------------------------------
..................................................................................................................................................................................................GACCCTGAGCCAGACGGTT.......................................................................................................................................................................................................... 191.000.00-----------------------------------------------------1.00---------------------------------------------------------------------
....................................................................................TACCTACCACCTACATTC......................................................................................................................................................................................................................................................................................................................... 181.000.00------------------------------------1.00--------------------------------------------------------------------------------------
................................................................................................................................GGGAGGTACCCGGGACCG............................................................................................................................................................................................................................................................................. 181.000.00--------------------1.00------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................CAGGTCCCTGTCCCCTAG.................................................... 181.000.00---------------------1.00-----------------------------------------------------------------------------------------------------
.................................................................................................................................GGAGGTACCCGGGAGTTCTA.......................................................................................................................................................................................................................................................................... 201.000.00--------------------------------------------------------------------1.00------------------------------------------------------
......................TCTTCCATCACTGCTAAA....................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00--------------------1.00------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................TGGAAGCAGCCAGGTCAG.............................................................. 181.000.00--------------------1.00------------------------------------------------------------------------------------------------------
........................TTCCATCACTGCTGTCCT..................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00--------------------------------------------------------------1.00------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................CTGTCCCCTACAGCCA............................................... 1640.500.50------------------------------------------------------------------------------------------------------------0.50--------------
.................................................................................................................................................................................................................................................................................................................................................................TGTCCCCTACAGCCA............................................... 1590.110.11--------------------------------------------------------------------------------------------------------------------------0.11