ID: uc008kvn.5
GENE: Pacsin3(5)
chr2:91102725-91102974+


(2)
AGO1.ip 		(4)
AGO2.ip 		(1)
AGO3.ip 		(21)
BRAIN 		(2)
CELL-LINE 		(1)
DCR.mut 		(2)
DGCR8.mut 		(10)
EMBRYO 		(3)
ESC 		(2)
FIBROBLAST 		(4)
HEART 		(2)
KIDNEY 		(7)
LIVER 		(2)
LUNG 		(6)
OTHER 		(6)
OTHER.mut 		(2)
PIWI.ip 		(3)
SKIN 		(13)
TESTES 		(3)
TOTAL-RNA

Sense strand
TGCACTTCATCCAGATTCTTCTAGGTGTTTGTTTGTGTACCACTTCCCTTATTAGGCTGCTTCTGTCAGTTCCTGAGGGTAGGAAGTGAGTTCCAGGTCTGACTGCTTCAGGTCTAGCCTATGGCTATGCTCAGAGAATGCTGGTGCGGGCCTGAGTGGAAGGCAGTCTGTCCTCACTGCCTCCCTTCTCTCTCACCCAGATGAAAACCCAGTATGAGCAGACCCTGGCCGAGCTAAATCGCTACACCCC
..............................................................................................................................................((((.(((...(((.((.(((((((........))))))))).))).))).)))).....................................................
...........................................................................................................................................140.........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		mjLiverWT1()
Liver Data. (liver)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		mjLiverKO2()
Liver Data. (Zcchc11 liver)		mjTestesWT4()
Testes Data. (testes)		SRR553584(SRX182790)
source: Heart. (Heart)		mjTestesWT3()
Testes Data. (testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		mjTestesWT2()
Testes Data. (testes)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR037901(GSM510437)
testes_rep2. (testes)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		mjLiverWT2()
Liver Data. (liver)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		SRR553586(SRX182792)
source: Testis. (testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		GSM640582(GSM640582)
small RNA in the liver with paternal control . (liver)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR206939(GSM723280)
other. (brain)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR042476(GSM539868)
mouse heart tissue [09-002]. (heart)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (salivary gland)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR095855BC1(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		SRR037937(GSM510475)
293cand2. (cell line)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		GSM475281(GSM475281)
total RNA. (testes)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR206940(GSM723281)
other. (brain)		SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR037924(GSM510462)
e9p5_rep2. (embryo)
................................................................................................................................................TGCGGGCCTGAGTGGAAGGCAGT...................................................................................23129.0029.00-1.00---1.002.00---2.00-2.002.00----1.001.00--1.00--1.001.002.00-----------1.00--1.00-----1.001.00--1.00--1.00--1.00---1.00-1.00-----1.001.001.00-----
................................................................................................................................................TGCGGGCCTGAGTGGAAGGCAG....................................................................................22118.0018.004.00---1.001.001.001.001.002.00-3.00------------1.00----------------------------------1.00-----1.00--------1.00---
...................................................................................................................................................................................CCTCCCTTCTCTCTCACCCAGT.................................................2210.000.00--5.00---1.00-2.00-----1.00---------------------------------------1.00-----------------------
................................................................................................................................................TGCGGGCCTGAGTGGAAGGCAGA...................................................................................2319.0018.00----------------2.002.00-1.00-2.00-2.00------------------------------------------------------
............................................................................................................................................CTGGTGCGGGCCTGAGTGGAAGGCA.....................................................................................2515.005.00---5.00--------------------------------------------------------------------------
..................................................................................................................................................CGGGCCTGAGTGGAAGGCAGT...................................................................................2114.004.00-------2.00--------------1.00--------------1.00----------------------------------------
.................................................................................................................................................................................TGCCTCCCTTCTCTCTCACCCAGT.................................................244.000.00--------------1.00--------------------------------1.00--------1.00--------------------1.00
.................................................................................................................................................GCGGGCCTGAGTGGAAGGCAGT...................................................................................2213.003.00-1.00--------------------------1.00-------------------------------1.00-----------------
................................................................................................................................................TGCGGGCCTGAGTGGAAGGCAT....................................................................................2213.002.00----2.00----------------------------1.00--------------------------------------------
.............................................................................................................................................TGGTGCGGGCCTGAGTGGAAGGC......................................................................................2313.003.003.00-----------------------------------------------------------------------------
................................................................................................................................................TGCGGGCCTGAGTGGAAGGCA.....................................................................................2112.002.00--------1.00-------------------------------------1.00-------------------------------
................................................................................................................................................TGCGGGCCTGAGTGGAAGGCAGTT..................................................................................2412.0029.00--------------------------1.00--------------------------1.00------------------------
..................................................................................................................................................CGGGCCTGAGTGGAAGGCAGTAA.................................................................................2312.004.00-----2.00------------------------------------------------------------------------
.............................................................................................................................................TGGTGCGGGCCTGAGTGGAAGGCA.....................................................................................2411.001.00-------------------------1.00----------------------------------------------------
................................................................................................................................................TGCGGGCCTGAGTGGAAGG.......................................................................................1911.001.00-------1.00----------------------------------------------------------------------
................................................................................................................................................TGCGGGCCTGAGTGGAAGGCAGG...................................................................................2311.0018.00---------1.00--------------------------------------------------------------------
....................................................................................................................................................GGCCTGAGTGGAAGGGA.....................................................................................171.000.00--------------------------------------------------1.00---------------------------
................................................................................................................................................TGCGGGCCTGAGTGGAAGGCAA....................................................................................2211.002.00------------------------------------------------------------------1.00-----------
................................................................................................................................................TGCGGGCCTGAGTGGAAG........................................................................................1811.001.00--------------------------------1.00---------------------------------------------
.............................................................................................................................................TGGTGCGGGCCTGAGTGGAAGGCAGT...................................................................................2611.001.00---------------------------------------------1.00--------------------------------
...........................................................................................................................................GCTGGTGCGGGCCTGTG..............................................................................................171.000.00--------------------------------------1.00---------------------------------------
................................................................................................................................................TGCGGGCCTGAGTGGAAGGCAGTAT.................................................................................2511.0029.00----------------------------------1.00-------------------------------------------
.............................................................................................................................................TGGTGCGGGCCTGAGTGGAAGG.......................................................................................2211.001.00----------1.00-------------------------------------------------------------------
.................................................................................................................................................GCGGGCCTGAGTGGAAGGA......................................................................................1911.001.00----------------------------------------------------------------------------1.00-
...................................................................................................................................................................................CCTCCCTTCTCTCTCACCCAGA.................................................2211.001.00-------------------------------------------------------------------------1.00----
.................................................................................................................................................................................TGCCTCCCTTCTCTCTCACCCAGA.................................................2411.001.00-------------------------------------------------------------------1.00----------
.............................................................................................................................................TGGTGCGGGCCTGAGTGGAAGGCAG....................................................................................2511.001.00----------------------------1.00-------------------------------------------------
....................................................................................................................................................................................................................TATGAGCAGACCCTGGCCGAGCTAAATCGC........3011.001.00-----------------------------------1.00------------------------------------------
...............................................................................................................................................GTGCGGGCCTGAGTGGAAGGCAGT...................................................................................2411.001.00---------------------------------------------------1.00--------------------------
...............................................................................................................................................GTGCGGGCCTGAGTGGAAGGCA.....................................................................................2211.001.00---------------------------------------------------------------------1.00--------
........................................................................................................................................................................................................................AGCAGACCCTGGCCGAGCTAAATCGC........2611.001.00---------------------------------------------------------------------------1.00--
.................................................................................................................................................GCGGGCCTGAGTGGAAGG.......................................................................................1811.001.00------------------------1.00-----------------------------------------------------
..................................................................................................................................................................................GCCTCCCTTCTCTCTCACCCAGT.................................................231.000.00-------------------------------------------------------------1.00----------------
..........................................................................................................................................................AGTGGAAGGCAGTCTGTTT.............................................................................191.000.00------------------------------1.00-----------------------------------------------
.................................................................................................................................................GCGGGCCTGAGTGGAAGGCAG....................................................................................2111.001.00----1.00-------------------------------------------------------------------------
....................................................................................................................................................................................CTCCCTTCTCTCTCACCCAGA.................................................2111.001.00-------------------------------------------1.00----------------------------------
.............................................................................................................................................TGGTGCGGGCCTGAGTGGAA.........................................................................................2011.001.00-1.00----------------------------------------------------------------------------
.....................................................................TTCCTGAGGGTAGGAGGA...................................................................................................................................................................181.000.00---------------------------------------------------------1.00--------------------
..............................................................................................................................................GGTGCGGGCCTGAGTGGAAG........................................................................................2011.001.00----------------------------------------1.00-------------------------------------
................................................................................................................................................TGCGGGCCTGAGTGGAAGGC......................................................................................2011.001.00------------1.00-----------------------------------------------------------------
....................................................................................................................................AGAGAATGCTGGTGCG......................................................................................................1620.500.50------------------------------0.50-----------------------------------------------

Antisense strand
TGCACTTCATCCAGATTCTTCTAGGTGTTTGTTTGTGTACCACTTCCCTTATTAGGCTGCTTCTGTCAGTTCCTGAGGGTAGGAAGTGAGTTCCAGGTCTGACTGCTTCAGGTCTAGCCTATGGCTATGCTCAGAGAATGCTGGTGCGGGCCTGAGTGGAAGGCAGTCTGTCCTCACTGCCTCCCTTCTCTCTCACCCAGATGAAAACCCAGTATGAGCAGACCCTGGCCGAGCTAAATCGCTACACCCC
..............................................................................................................................................((((.(((...(((.((.(((((((........))))))))).))).))).)))).....................................................
...........................................................................................................................................140.........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		mjLiverWT1()
Liver Data. (liver)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		mjLiverKO2()
Liver Data. (Zcchc11 liver)		mjTestesWT4()
Testes Data. (testes)		SRR553584(SRX182790)
source: Heart. (Heart)		mjTestesWT3()
Testes Data. (testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		mjTestesWT2()
Testes Data. (testes)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR037901(GSM510437)
testes_rep2. (testes)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		mjLiverWT2()
Liver Data. (liver)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		SRR553586(SRX182792)
source: Testis. (testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		GSM640582(GSM640582)
small RNA in the liver with paternal control . (liver)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR206939(GSM723280)
other. (brain)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR042476(GSM539868)
mouse heart tissue [09-002]. (heart)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (salivary gland)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR095855BC1(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		SRR037937(GSM510475)
293cand2. (cell line)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		GSM475281(GSM475281)
total RNA. (testes)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR206940(GSM723281)
other. (brain)		SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR037924(GSM510462)
e9p5_rep2. (embryo)
.....................................................AGGCTGCTTCTGTCAGTTCCTGAGGGTA......................................................................................................................................................................... 2812.002.00--------------------2.00---------------------------------------------------------
...............................................................................................................GTCTAGCCTATGGCTATGCTCAGAGAA................................................................................................................ 2712.002.00-----------------------------2.00------------------------------------------------
......................................................................................................................................................................................CCCTTCTCTCTCACCCCATT................................................ 201.000.00-------------------------------1.00----------------------------------------------
.GCACTTCATCCAGATTCTTCTA................................................................................................................................................................................................................................... 2211.001.00-----------------------------------------1.00------------------------------------
......................................................GGCTGCTTCTGTCAGTTCCTGAGGGTA......................................................................................................................................................................... 2711.001.00---------------1.00--------------------------------------------------------------
.................................................................................................................................................................................TGCCTCCCTTCTCTCTCACC..................................................... 2011.001.00-1.00----------------------------------------------------------------------------
.....................................................................................GTGAGTTCCAGGTCTGGTC.................................................................................................................................................. 191.000.00-1.00----------------------------------------------------------------------------
.GCACTTCATCCAGATTCTTCT.................................................................................................................................................................................................................................... 2111.001.00---------------------------------------------------------------1.00--------------
......................................................................................................................................................................................CCCTTCTCTCTCACCCTGA................................................. 191.000.00--------------------------------------------1.00---------------------------------
............................................................................................CCAGGTCTGACTGCTTCAGGTCTAGCCTA................................................................................................................................. 2911.001.00--------------------------------------------------------------------1.00---------
..................................................................................GAAGTGAGTTCCAGGTCTT..................................................................................................................................................... 191.000.00------------------1.00-----------------------------------------------------------
............................TTGTTTGTGTACCACTTCCCTTATTA.................................................................................................................................................................................................... 2611.001.00---------------1.00--------------------------------------------------------------
........................................................................................................................................................................................CTTCTCTCTCACCCACAGA............................................... 191.000.00------------------------------------1.00-----------------------------------------
...............................................................................................................................................................AAGGCAGTCTGTCCTC........................................................................... 1690.110.11-------------0.11----------------------------------------------------------------