ID: uc008jeh.32
GENE: Nup214(32)
chr2:31906329-31906578+


(1)
AGO.mut
(3)
AGO1.ip
(17)
AGO2.ip
(2)
AGO3.ip
(10)
B-CELL
(32)
BRAIN
(3)
CELL-LINE
(2)
DGCR8.mut
(7)
EMBRYO
(9)
ESC
(7)
FIBROBLAST
(3)
HEART
(4)
LIVER
(1)
LUNG
(4)
LYMPH
(17)
OTHER
(8)
OTHER.mut
(1)
PIWI.ip
(5)
SKIN
(8)
SPLEEN
(18)
TESTES
(4)
THYMUS
(6)
TOTAL-RNA
(1)
UTERUS

Sense strand
TTTCTGATGTCTTCCTTCTCAGAGCCACGGTAAAGGCTTACTCTGGGCTAGAAGCCGGTTTCCTCTGAGTCTGTTGACTCGGTCCAAGCTTGTCACCACAGCTCCTGTGTGGTACATCCAAGACAGGTGACAGTGAGTGAGGTGTGGGCAGCATGAGGACTAGGGCCATGACAACCCTGTCCCATTCTCACCGCACCCAGGTTCGGGAGCAGCGGCAATACTGCATCCTTCGGTACCCTCGCCAGTCAGA
.........................................................................................................................................((.(((((((..((.(((.((((.((((.........))))))))))).))..)))))))))...................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormmjLiverKO2()
Liver Data. (Zcchc11 liver)
SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)
Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
mjTestesWT4()
Testes Data. (testes)
SRR059769(GSM562831)
Treg_Drosha. (spleen)
SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)
Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
mjLiverKO3()
Liver Data. (Zcchc11 liver)
SRR306532(GSM750575)
19-24nt. (ago2 brain)
SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)
SRR306534(GSM750577)
19-24nt. (ago2 brain)
GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)
Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
SRR059770(GSM562832)
Treg_Dicer. (spleen)
SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)
SRR306542(GSM750585)
19-24nt. (ago2 brain)
SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (salivary gland)
SRR039610(GSM527274)
small RNA-Seq. (brain)
SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)
SRR402760(SRX117943)
source: ES E14 male cells. (ESC)
SRR059767(GSM562829)
DN3_Dicer. (thymus)
SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
SRR306535(GSM750578)
19-24nt. (ago2 brain)
SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)
SRR346415(SRX098256)
source: Testis. (Testes)
SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesWT3()
Testes Data. (testes)
SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)
SRR306536(GSM750579)
19-24nt. (ago2 brain)
SRR402766(SRX117949)
source: ES PGK female cells. (ESC)
SRR073955(GSM629281)
total RNA. (blood)
SRR206940(GSM723281)
other. (brain)
SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)
SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)
SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)
SRR059765(GSM562827)
DN3_control. (thymus)
SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)
SRR059768(GSM562830)
Treg_control. (spleen)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)
SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)
SRR306539(GSM750582)
19-24nt. (ago2 brain)
SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)
SRR038744(GSM527279)
small RNA-Seq. (brain)
SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)
SRR306543(GSM750586)
19-24nt. (ago2 brain)
SRR306527(GSM750570)
19-24nt. (ago2 brain)
SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)
SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)
GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)
GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)
SRR553582(SRX182788)
source: Brain. (Brain)
SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)
SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)
SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)
SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)
SRR553584(SRX182790)
source: Heart. (Heart)
SRR306533(GSM750576)
19-24nt. (ago2 brain)
SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)
mjTestesWT1()
Testes Data. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)
SRR206939(GSM723280)
other. (brain)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)
SRR095855BC1(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)
SRR306541(GSM750584)
19-24nt. (ago2 brain)
GSM510452(GSM510452)
newborn_rep8. (total RNA)
SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)
SRR059766(GSM562828)
DN3_Drosha. (thymus)
SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)
GSM510456(GSM510456)
newborn_rep12. (total RNA)
SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)
SRR037914(GSM510451)
newborn_rep7. (total RNA)
SRR069834(GSM304914)
Analysis of small RNAs in murine neutrophils cultured in vitro by Solexa/Illumina genome analyzer. (blood)
SRR306530(GSM750573)
19-24nt. (ago2 brain)
SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)
SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR306540(GSM750583)
19-24nt. (ago2 brain)
SRR037912(GSM510449)
newborn_rep5. (total RNA)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)
SRR306531(GSM750574)
19-24nt. (ago2 brain)
SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)
SRR038741(GSM527276)
small RNA-Seq. (brain)
SRR525241(SRA056111/SRX170317)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)
GSM510453(GSM510453)
newborn_rep9. (total RNA)
SRR306529(GSM750572)
19-24nt. (ago2 brain)
SRR042476(GSM539868)
mouse heart tissue [09-002]. (heart)
SRR037905(GSM510441)
brain_rep2. (brain)
SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)
GSM510454(GSM510454)
newborn_rep10. (total RNA)
RuiDcrWT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)
SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR206942(GSM723283)
other. (brain)
SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)
SRR402761(SRX117944)
source: ES E14 male cells. (ESC)
SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)
SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)
SRR073954(GSM629280)
total RNA. (blood)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)
SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)
SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)
SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)
SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)
...................................................................................................................................................................................TCCCATTCTCACCGCACCCAGT.................................................221100.008.00-1.002.007.002.001.00--5.00--1.00-5.00-5.00-6.00-1.003.001.004.002.002.00--2.00-3.001.002.00---1.00--2.003.00-1.001.00--1.003.00-3.00-1.001.002.00--1.00--2.002.00-1.002.00-1.00------1.00-2.00------1.00-------1.00-1.00-1.00----1.00--1.00-----1.00------1.00------1.00---1.00--1.00------1.00-1.00--
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGGACT.........................................................................................24197.0097.0013.005.00--5.006.003.00-2.008.001.005.004.00-----2.001.00----1.003.004.00------1.00-2.00--1.00-3.00---1.00----------1.001.00------2.00-1.001.00--1.002.00-1.00-2.00--2.00---1.001.001.00-1.00--------1.00-------------1.00----------1.00-1.001.00--1.00-------1.00-1.00---
...................................................................................................................................................................................TCCCATTCTCACCGCACCCAGA.................................................22131.008.00--12.007.001.00-1.00------1.00-----1.00-----1.00-1.00---------1.00----------------------------------------------------------1.00-------------------1.00-1.00----1.00----1.00----------
........................................................................................................................................GTGAGGTGTGGGCAGCATGAGGACT.........................................................................................25125.0025.0016.001.00---2.002.00---1.00----------------------------------1.00----------------------------------------1.00----1.00-----------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGGAC..........................................................................................23124.0024.00-5.00--2.002.001.005.00-1.001.00------------------1.00---1.00----------------------1.00-----------1.00-------1.00---------------------1.00--------1.00-------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGGA...........................................................................................22117.0017.00-3.00---1.001.00---2.001.00------------1.00-----2.00-----1.00----1.00------------2.00--------------1.00----------------------------------1.00----------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGG............................................................................................21112.0012.00-1.00--2.00---------------1.00------1.00----1.00---2.001.00---------1.00------------1.00-----1.00------------------------------------------------------------------------
...................................................................................................................................................................................TCCCATTCTCACCGCACCCAGC.................................................22111.008.00--6.003.00---------1.00-----1.00-----------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAG.............................................................................................20110.0010.00----1.00---------1.00-3.00-------------------------------------------1.001.00--1.00-----------1.00--------------------------1.00-----------------------------------
...........................................................................................................................................AGGTGTGGGCAGCATGAGGACT.........................................................................................22110.0010.00-----2.00-----1.00--2.00------------------1.00---------3.00-------------------------------------------------------------1.00---------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGGT...........................................................................................2218.0012.00-------7.00-----------------------1.00-----------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCCCATTCTCACCGCACCCAG..................................................2118.008.00-1.00-2.001.00----------------1.00-----------------------------------------------------------------------1.00--------1.00---------1.00--------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGA..............................................................................................1916.006.00----1.00------------------------------------------1.00---------2.00----------1.00-----------------------------------------1.00----------------------------
........................................................................................................................................GTGAGGTGTGGGCAGCATGAGGA...........................................................................................2316.006.00-----1.003.00-1.00------------1.00---------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................GAGGTGTGGGCAGCATGAGG............................................................................................2015.005.00----------------------------4.00------------------1.00-------------------------------------------------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAA.............................................................................................2014.006.00-----------------------------------------------------------------------------------------1.00-----1.00-----1.00---------------1.00---------------------
........................................................................................................................................GTGAGGTGTGGGCAGCATGAGGAC..........................................................................................2414.004.00-1.00--1.00-1.00-1.00----------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................GAGGTGTGGGCAGCATGAGGACT.........................................................................................2314.004.00----------1.00---2.00------------------------------------------------------------------------------------------------------------------1.00---------
..............................................................CTCTGAGTCTGTTGACC...........................................................................................................................................................................173.000.00----------------------------------3.00--------------------------------------------------------------------------------------------------------
..............................................................................................................................................TGTGGGCAGCATGAGGACTAGGG.....................................................................................2313.003.00----------1.00-1.00------------------------1.00-----------------------------------------------------------------------------------------------------
..........................................................................................................................................GAGGTGTGGGCAGCATGAGGA...........................................................................................2113.003.00------1.00------------------------------------------------------------------------1.00-----------------------------------1.00-----------------------
.......................................................................................................................................................................................ATTCTCACCGCACCCAGT.................................................183.000.00---------------2.00--1.00------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGGAA..........................................................................................2313.0017.00----------1.00-----1.00-------------------------------------------------------------1.00------------------------------------------------------------
..............................................................................................................................................TGTGGGCAGCATGAGGACTAGG......................................................................................2212.002.00--------1.00------------------------------------------1.00---------------------------------------------------------------------------------------
........................................................................................................................................GTGAGGTGTGGGCAGCATGAGGAT..........................................................................................2412.006.00------1.00-------1.00----------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................CCATTCTCACCGCACCCAGT.................................................202.000.00------------------1.00----------------------------------------------1.00-------------------------------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGGTAT.........................................................................................2412.0012.00-------------------2.00-----------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGGAT..........................................................................................2312.0017.00----------------1.00-----1.00--------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................AGTGAGGTGTGGGCAGCATGAGGAAT.........................................................................................262.000.00------------------2.00------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGGACTA........................................................................................2512.002.00---------1.00-------------1.00-------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCCCATTCTCACCGCACCAAGT.................................................221.000.00----------------------------------------------------------------------------------------------------------------------------------1.00--------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGGAATT........................................................................................2511.0017.00-----------------------1.00-------------------------------------------------------------------------------------------------------------------
........................................................................................................................................GTGAGGTGTGGGCAGCATGAGA............................................................................................2211.001.00-----------------------------------------------------1.00-------------------------------------------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGGACA.........................................................................................2411.0024.00---------------------------------------------------------------------------------------------------1.00---------------------------------------
...............................................................................................................................................................................................................AGCAGCGGCAATACTGTTG........................191.000.00-------------------------------------------------1.00-----------------------------------------------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGGACTT........................................................................................2511.0097.00---------------------------------------------1.00---------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................GGTTCGGGAGCAGCGGCAATACTGC..........................2511.001.00------------------------------------------------------------------------------------------------------------------------------1.00------------
..........................................................................................................................................GAGGTGTGGGCAGCATGAGGAC..........................................................................................2211.001.00--------------1.00----------------------------------------------------------------------------------------------------------------------------
........................................................................GTTGACTCGGTCCAAGCTT...............................................................................................................................................................1911.001.00-----------------------------------------------------1.00-------------------------------------------------------------------------------------
............................................................................................................................................GGTGTGGGCAGCATGAGGA...........................................................................................1911.001.00--------------------------------------------1.00----------------------------------------------------------------------------------------------
...........................................................................................................................................AGGTGTGGGCAGCATGAGTACT.........................................................................................2211.001.00------------1.00------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGGACTAT.......................................................................................2611.002.00-1.00-----------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................GTGTGGGCAGCATGAGGACTAGAA.....................................................................................241.000.00----------------1.00--------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAAA............................................................................................2111.006.00---------------------------------------------------------------------------1.00---------------------------------------------------------------
.................................................................................................................................................................................TGTCCCATTCTCACCGCACCCAG..................................................2311.001.00-1.00-----------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................AGCTCCTGTGTGGTAAACA....................................................................................................................................191.000.00----------1.00--------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................GTGAGGTGTGGGCAGCATGAG.............................................................................................2111.001.00--------------------------------1.00----------------------------------------------------------------------------------------------------------
.....................................................................................................................................TGAGTGAGGTGTGGGCATCGC................................................................................................211.000.00-----------------------------------------------------------------------------------------------------------------------------------------1.00-
.........................................................................................................................................................................................................TTCGGGAGCAGCGGCAATA..............................1911.001.00--------------------------------1.00----------------------------------------------------------------------------------------------------------
..........................................................................................................................................GAGGTGTGGGCAGCATGAGGACTAA.......................................................................................251.000.00-1.00-----------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................AGGTGTGGGCAGCATGAGGACTA........................................................................................2311.001.00------------------------------------------------------------------------------------------------------------------------------------1.00------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGGACTTA.......................................................................................2611.0097.00----------------1.00--------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................TGTGGGCAGCATGAGGACTAGGA.....................................................................................2311.002.00------------1.00------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGC..............................................................................................1911.001.00-----------------------------------------------------------------------------------------------------------------------------------1.00-------
...........................................................................................................................................AGGTGTGGGCAGCATGAG.............................................................................................1811.001.00---------------------1.00---------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................AGGTGTGGGCAGCATGAGGAA..........................................................................................2111.001.00------------1.00------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................CTGTCCCATTCTCACCGCACC.....................................................2111.001.00---1.00---------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................AGGTGTGGGCAGCATGAGGAAA.........................................................................................2211.001.00--------------------------------------------1.00----------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................AGCAGCGGCAATACTGCTT........................191.000.00-------------------------------------------------1.00-----------------------------------------------------------------------------------------
.......................................................................................................................................AGTGAGGTGTGGGCAGCATGAGGACT.........................................................................................2611.001.00------------------------------------------1.00------------------------------------------------------------------------------------------------
........................................................................................................................................GTGAGGTGTGGGCAGCATGAGG............................................................................................2211.001.00---------------------1.00---------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................GTCCCATTCTCACCGCACCCAG..................................................2211.001.00-----------------------------------------------------------------------1.00-------------------------------------------------------------------
...........................................................................................................................................AGGTGTGGGCAGCATGAGGACTAT.......................................................................................2411.001.00--------------------------------------------------1.00----------------------------------------------------------------------------------------
..........................................CTGGGCTAGAAGCCGAGTA.............................................................................................................................................................................................191.000.00-------------------------------------------------------------------1.00-----------------------------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGGACAAT.......................................................................................2611.0024.00----1.00--------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................AGGACTAGGGCCATGACA.............................................................................1811.001.00---------------------------------------------------------------------------------------1.00---------------------------------------------------
...........................................................................................................................................AGGTGTGGGCAGCATGAGGA...........................................................................................2011.001.00--------------------1.00----------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGAGCA.........................................................................................2411.0010.00-1.00-----------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................................AGGTGACAGTGAGTGGGGT...........................................................................................................191.000.00---------------------------------------------------------------------------1.00---------------------------------------------------------------
...................................................................................................................................................................................TCCCATTCTCACCGCACCCAAT.................................................221.000.00--1.00----------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATGAGGAAA.........................................................................................2411.0017.00-------------------------------------------------------------------------------------------------------------1.00-----------------------------
....................................................................................................................................................................................CCCATTCTCACCGCACCCAGT.................................................211.000.00--------1.00----------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGAGGTGTGGGCAGCATG...............................................................................................1811.001.00------------------------------------------------------------------------------------1.00------------------------------------------------------

Antisense strand
TTTCTGATGTCTTCCTTCTCAGAGCCACGGTAAAGGCTTACTCTGGGCTAGAAGCCGGTTTCCTCTGAGTCTGTTGACTCGGTCCAAGCTTGTCACCACAGCTCCTGTGTGGTACATCCAAGACAGGTGACAGTGAGTGAGGTGTGGGCAGCATGAGGACTAGGGCCATGACAACCCTGTCCCATTCTCACCGCACCCAGGTTCGGGAGCAGCGGCAATACTGCATCCTTCGGTACCCTCGCCAGTCAGA
.........................................................................................................................................((.(((((((..((.(((.((((.((((.........))))))))))).))..)))))))))...................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormmjLiverKO2()
Liver Data. (Zcchc11 liver)
SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)
Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
mjTestesWT4()
Testes Data. (testes)
SRR059769(GSM562831)
Treg_Drosha. (spleen)
SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)
Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
mjLiverKO3()
Liver Data. (Zcchc11 liver)
SRR306532(GSM750575)
19-24nt. (ago2 brain)
SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)
SRR306534(GSM750577)
19-24nt. (ago2 brain)
GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)
Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
SRR059770(GSM562832)
Treg_Dicer. (spleen)
SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)
SRR306542(GSM750585)
19-24nt. (ago2 brain)
SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (salivary gland)
SRR039610(GSM527274)
small RNA-Seq. (brain)
SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)
SRR402760(SRX117943)
source: ES E14 male cells. (ESC)
SRR059767(GSM562829)
DN3_Dicer. (thymus)
SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
SRR306535(GSM750578)
19-24nt. (ago2 brain)
SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)
SRR346415(SRX098256)
source: Testis. (Testes)
SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesWT3()
Testes Data. (testes)
SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)
SRR306536(GSM750579)
19-24nt. (ago2 brain)
SRR402766(SRX117949)
source: ES PGK female cells. (ESC)
SRR073955(GSM629281)
total RNA. (blood)
SRR206940(GSM723281)
other. (brain)
SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)
SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)
SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)
SRR059765(GSM562827)
DN3_control. (thymus)
SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)
SRR059768(GSM562830)
Treg_control. (spleen)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)
SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)
SRR306539(GSM750582)
19-24nt. (ago2 brain)
SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)
SRR038744(GSM527279)
small RNA-Seq. (brain)
SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)
SRR306543(GSM750586)
19-24nt. (ago2 brain)
SRR306527(GSM750570)
19-24nt. (ago2 brain)
SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)
SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)
GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)
GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)
SRR553582(SRX182788)
source: Brain. (Brain)
SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)
SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)
SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)
SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)
SRR553584(SRX182790)
source: Heart. (Heart)
SRR306533(GSM750576)
19-24nt. (ago2 brain)
SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)
mjTestesWT1()
Testes Data. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)
SRR206939(GSM723280)
other. (brain)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)
SRR095855BC1(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)
SRR306541(GSM750584)
19-24nt. (ago2 brain)
GSM510452(GSM510452)
newborn_rep8. (total RNA)
SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)
SRR059766(GSM562828)
DN3_Drosha. (thymus)
SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)
GSM510456(GSM510456)
newborn_rep12. (total RNA)
SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)
SRR037914(GSM510451)
newborn_rep7. (total RNA)
SRR069834(GSM304914)
Analysis of small RNAs in murine neutrophils cultured in vitro by Solexa/Illumina genome analyzer. (blood)
SRR306530(GSM750573)
19-24nt. (ago2 brain)
SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)
SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR306540(GSM750583)
19-24nt. (ago2 brain)
SRR037912(GSM510449)
newborn_rep5. (total RNA)
SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)
SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)
SRR306531(GSM750574)
19-24nt. (ago2 brain)
SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)
SRR038741(GSM527276)
small RNA-Seq. (brain)
SRR525241(SRA056111/SRX170317)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)
GSM510453(GSM510453)
newborn_rep9. (total RNA)
SRR306529(GSM750572)
19-24nt. (ago2 brain)
SRR042476(GSM539868)
mouse heart tissue [09-002]. (heart)
SRR037905(GSM510441)
brain_rep2. (brain)
SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)
GSM510454(GSM510454)
newborn_rep10. (total RNA)
RuiDcrWT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)
SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR206942(GSM723283)
other. (brain)
SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)
SRR402761(SRX117944)
source: ES E14 male cells. (ESC)
SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)
SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)
SRR073954(GSM629280)
total RNA. (blood)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)
SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)
SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)
SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)
SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)
............................................................................ACTCGGTCCAAGCTTGTCACCACAGCTCCT................................................................................................................................................ 3011.001.00------------------------------------------------------------------------1.00------------------------------------------------------------------
........................................................................................................................................................................TGACAACCCTGTCCCATTCTCAC........................................................... 2311.001.00------------------------------------------------------------------------------1.00------------------------------------------------------------
..........................................................................................................GTGTGGTACATCCAAGACAGGTT......................................................................................................................... 231.000.00------------------------------------------------------------------------------------------------------------------1.00------------------------
...............................................................................................................................................................................................................AGCAGCGGCAATACTGCATCCTT.................... 2311.001.00-----------------------------------------1.00-------------------------------------------------------------------------------------------------
..................................................GAAGCCGGTTTCCTCTGACTC................................................................................................................................................................................... 211.000.00-------------------------------------------------------------------1.00-----------------------------------------------------------------------
............................................................................................................................................................................AACCCTGTCCCATTCTCACCGCACCCA................................................... 2711.001.00---------------------------------------------------------------------------------------------------------------1.00---------------------------
......................................................CCGGTTTCCTCTGA...................................................................................................................................................................................... 14100.200.20-------------------------------------------------0.10----------------------------------------------------------------------------------------0.10