ID: uc008isc.32
GENE: Abca2(33)
chr2:25299458-25299639+


(1)
AGO.mut 		(6)
AGO2.ip 		(17)
BRAIN 		(2)
CELL-LINE 		(3)
DCR.mut 		(2)
DGCR8.mut 		(3)
EMBRYO 		(4)
ESC 		(1)
LIVER 		(5)
OTHER 		(3)
OTHER.mut 		(1)
OVARY 		(8)
PIWI.ip 		(2)
PIWI.mut 		(4)
SPLEEN 		(22)
TESTES 		(1)
THYMUS 		(1)
UTERUS

Sense strand
ACCAACCACCCCATGAACAAGACCAGTGCTAGCCTCTCCCTGGATTACCTGTGAGTGAGGCAGACCAAGTTGAGGAGGGGCAGGACCACCTCGTCCTGACACCTCCTGGAACTGAGTGCTGTCCCCTTCTAGACTGCAGGGCACAGATGTGGTCATCGCCATCTTCATCATTGTGGCCATGT
....................................................(((...(((((((((..((.((((((..((((((......))))))...)))))).))..)).)).)))))...))).....................................................
..................................................51...............................................................................132................................................
SizePerfect hitTotal NormPerfect NormSRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		GSM261958(GSM261958)
oocytesmallRNA-24to30. (oocyte)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR014234(GSM319958)
Ovary total. (ovary)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR014229(GSM319953)
10 dpp MILI. (mili testes)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR037905(GSM510441)
brain_rep2. (brain)		GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)
..................................................GTGAGTGAGGCAGACCAAGTTGAGGAG.........................................................................................................27117.0017.005.00-3.00---2.001.001.00------------2.00---1.001.001.00---------------------------------
..................................................GTGAGTGAGGCAGACCAAGTTGAGGAGG........................................................................................................28116.0016.004.001.001.00-2.00-2.001.00-3.00--2.00------------------------------------------------
..................................................GTGAGTGAGGCAGACCAAGTTGAGGA..........................................................................................................26115.0015.001.006.00--3.00-----1.00----1.00--------------------1.00------1.00-1.00---------------
.............................................................................................................AACTGAGTGCTGTCCCCTTCTAG..................................................23114.0014.00---5.00-2.00------------1.00----2.00------------------1.00---1.00------1.00-1.00-----
..................................................GTGAGTGAGGCAGACCAAGTTGAGG...........................................................................................................25110.0010.001.001.00--1.00-1.00----3.001.00------------1.00-1.00---------------------------------
.............................................................................................................AACTGAGTGCTGTCCCCTTCTAGA.................................................2414.004.00---2.00---------1.00--------------------1.00--------------------------
.............................................................................................................AACTGAGTGCTGTCCCCTTCT....................................................2114.004.00-----1.00-------------2.00---------------------------------------1.00-
..................................................GTGAGTGAGGCAGACCAAGTTGAGGAGT........................................................................................................2814.0017.001.001.001.00----1.00-----------------------------------------------------
...................................................TGAGTGAGGCAGACCAAGTTGAGGAG.........................................................................................................2614.004.00--------1.00-1.00---------1.00-----1.00----------------------------------
.............................................................................................................AACTGAGTGCTGTCCCCTTCTAGT.................................................2413.0014.00-----1.00-------------------------------1.00-----------1.00-----------
...................................................TGAGTGAGGCAGACCAAGTTGAGGAGG........................................................................................................2713.003.001.00-1.00-1.00--------------------------------------------------------
..................................................GTGAGTGAGGCAGACCAAGTTG..............................................................................................................2212.002.00------------------1.00-------------1.00----------------------------
....................................................................................................................................ACTGCAGGGCACAGATGTGGTCATCGTTTT....................302.000.00----------------2.00--------------------------------------------
...................................................TGAGTGAGGCAGACCAAGTTGAGG...........................................................................................................2412.002.00---------------1.00------------------------------------1.00--------
...................................................TGAGTGAGGCAGACCAAGTTGAGGA..........................................................................................................2512.002.00--1.00-------1.00--------------------------------------------------
.............TGAACAAGACCAGTGCTAGCCTCTCCC..............................................................................................................................................2711.001.00--1.00----------------------------------------------------------
...................................................TGAGTGAGGCAGACCAAGTTGAGGAGGG.......................................................................................................2811.001.00---------1.00---------------------------------------------------
.........................................................................................................CTGGAACTGAGTGCTGTCCCCTTCTAG..................................................2711.001.00-------------1.00-----------------------------------------------
............ATGAACAAGACCAGTGCTAGCCTCTCCC..............................................................................................................................................2811.001.00----------------------------------------1.00--------------------
..............................................................................................................ACTGAGTGCTGTCCCCTTCTAGT.................................................231.000.00------------------------------------------------------1.00------
..................................................GTGAGTGAGGCAGACCAAGTTGA.............................................................................................................2311.001.00----------------------------1.00--------------------------------
...............................................................ACCAAGTTGAGGAGGGGCAGGACCACC............................................................................................2711.001.00-1.00-----------------------------------------------------------
.............................................................................................................AACTGAGTGCTGTCCCCTTCTAGTAT...............................................2611.0014.00--------------------------------------------------------1.00----
...................................................TGAGTGAGGCAGACCAAGTTG..............................................................................................................2111.001.00----------------------1.00--------------------------------------
..................................................GTGAGTGAGGCAGACCAAGTTGAG............................................................................................................2411.001.00-------1.00-----------------------------------------------------
..........................TGCTAGCCTCTCCCTGGATT........................................................................................................................................2011.001.00--------------1.00----------------------------------------------
..................................................GTGAGTGAGGCAGACCAAGTTGAGGATTAT......................................................................................................3011.0015.00--------1.00----------------------------------------------------
......................CCAGTGCTAGCCTCTCCCT.............................................................................................................................................1911.001.00-----------------------------------------1.00-------------------
.............................................................................................................AACTGAGTGCTGTCCCCTTCTT...................................................2211.004.00-----1.00-------------------------------------------------------
................................................................................................................................................AGATGTGGTCATCGCCATCTT.................2111.001.00---------------------------------------------------1.00---------
...................................................TGAGTGAGGCAGACCAAGTTGAG............................................................................................................2311.001.00--------1.00----------------------------------------------------
...................................................TGAGTGAGGCAGACCAAGTTGAGGGG.........................................................................................................2611.002.00------------------------------1.00------------------------------
..........................................................................................................TGGAACTGAGTGCTGTCCCCTTCTAGA.................................................2711.001.00--------------------1.00----------------------------------------
............................................................................................................................CCTTCTAGACTGCAGGCCTT......................................201.000.00-----------------------------------1.00-------------------------
.............TGAACAAGACCAGTGCTAGCCTCTCC...............................................................................................................................................2611.001.00------------------------1.00------------------------------------
.............................................................................................................AACTGAGTGCTGTCCCCTTCTATT.................................................241.000.00-----1.00-------------------------------------------------------
..................................................GTGAGTGAGGCAGACCAAGTTGAGGAGGGG......................................................................................................3011.001.00----------------------1.00--------------------------------------
.............TGAACAAGACCAGTGCTAGCCTCTCCCT.............................................................................................................................................2811.001.00-1.00-----------------------------------------------------------
.............................................................................................................................CTTCTAGACTGCAGGGTGA......................................191.000.00---------------------------------------------------------1.00---
......................................................................................................CTCCTGGAACTGAGTGCTTTCC..........................................................221.000.00--------------1.00----------------------------------------------
.......................................................TGAGGCAGACCAAGTTGAGA...........................................................................................................201.000.00------------------------1.00------------------------------------
.............TGAACAAGACCAGTGCTAGCCTCTCCCTG............................................................................................................................................2911.001.00--------------------------------------------------1.00----------
...............................................................................................................................TCTAGACTGCAGGGCACAGA...................................2020.500.50----------------------------0.50--------------------------------
.................................................................................AGGACCACCTCGT........................................................................................1390.220.22-----------------------------0.22-------------------------------

Antisense strand
ACCAACCACCCCATGAACAAGACCAGTGCTAGCCTCTCCCTGGATTACCTGTGAGTGAGGCAGACCAAGTTGAGGAGGGGCAGGACCACCTCGTCCTGACACCTCCTGGAACTGAGTGCTGTCCCCTTCTAGACTGCAGGGCACAGATGTGGTCATCGCCATCTTCATCATTGTGGCCATGT
....................................................(((...(((((((((..((.((((((..((((((......))))))...)))))).))..)).)).)))))...))).....................................................
..................................................51...............................................................................132................................................
SizePerfect hitTotal NormPerfect NormSRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		GSM261958(GSM261958)
oocytesmallRNA-24to30. (oocyte)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR014234(GSM319958)
Ovary total. (ovary)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR014229(GSM319953)
10 dpp MILI. (mili testes)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR037905(GSM510441)
brain_rep2. (brain)		GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)
.............................................................................................TCCTGACACCTCCTGAAG....................................................................... 183.000.00-----------------2.00----------------------------------------1.00--
.............................................................................................TCCTGACACCTCCTGAA........................................................................ 172.000.00---------------------------------1.00--------------1.00------------
.............................................................................................TCCTGACACCTCCTGAGAT...................................................................... 191.000.00-----------------------------1.00-------------------------------
...........................................................................................................................................................TCGCCATCTTCATCACG.......... 171.000.00---------------------------------------1.00---------------------
.............................................................................................TCCTGACACCTCCTGAC........................................................................ 171.000.00-------------------------------1.00-----------------------------
......................CCAGTGCTAGCCTCTGCG.............................................................................................................................................. 181.000.00-----------------------------------------------1.00-------------
.............................................................................................TCCTGACACCTCCTGAAGT...................................................................... 191.000.00--------------------------------------1.00----------------------
.............................................................................................................AACTGAGTGCTGTCCAACT...................................................... 191.000.00--------------------------------------------1.00----------------
......................................................................TGAGGAGGGGCAGGAC................................................................................................ 1660.170.17------------------------------------------------------------0.17