ID: uc008gpb.1
GENE: Fads2(1)
chr19:10139252-10139501-


(1)
AGO.mut 		(1)
AGO1.ip 		(5)
AGO2.ip 		(2)
AGO3.ip 		(2)
B-CELL 		(26)
BRAIN 		(5)
CELL-LINE 		(4)
DCR.mut 		(2)
DGCR8.mut 		(8)
EMBRYO 		(6)
ESC 		(3)
FIBROBLAST 		(1)
HEART 		(1)
KIDNEY 		(17)
LIVER 		(1)
LUNG 		(1)
LYMPH 		(14)
OTHER 		(8)
OTHER.mut 		(1)
OVARY 		(1)
PANCREAS 		(5)
PIWI.ip 		(2)
PIWI.mut 		(3)
SKIN 		(4)
SPLEEN 		(27)
TESTES 		(2)
THYMUS 		(1)
TOTAL-RNA 		(1)
UTERUS

Sense strand
TCAATTCGGCTTTCTGCAGTGCCCCTGTTCATAAATTGCCCCTCTACACACCACCAGTAACATCTTCAGGCAGTTGGCAGGAGCCACAGTCTAGTCCTGGTTTAAGATAGGACCTCAGCCCTGCCTGCCTCCCTGGGTTGGAGAGGAGGTGGAGAACATGGGTCTTGGGTTGCACTCACTCTGCCCACCTGCTCCCCCAGCCTCTTCCCCACTATGCCACGTCACAACCTGCACAAGATTGCCCCACTGG
....................................................................................................................................(((((..(((((((.((..(((....(((((..........))))))))..))..))).)))))))))..................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		mjLiverWT1()
Liver Data. (liver)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		mjLiverWT3()
Liver Data. (liver)		mjLiverKO2()
Liver Data. (Zcchc11 liver)		mjTestesWT1()
Testes Data. (testes)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR073954(GSM629280)
total RNA. (blood)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR553582(SRX182788)
source: Brain. (Brain)		mjTestesWT3()
Testes Data. (testes)		SRR206942(GSM723283)
other. (brain)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR077864(GSM637801)
18-30 nt small RNAs. (liver)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR206940(GSM723281)
other. (brain)		SRR060845(GSM561991)
total RNA. (brain)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR206941(GSM723282)
other. (brain)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		mjTestesWT2()
Testes Data. (testes)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR095855BC8(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR037937(GSM510475)
293cand2. (cell line)		GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)		GSM640582(GSM640582)
small RNA in the liver with paternal control . (liver)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM510453(GSM510453)
newborn_rep9. (total RNA)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		mjTestesWT4()
Testes Data. (testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR037898(GSM510434)
ovary_rep3. (ovary)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR065046(SRR065046)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		mjLiverWT2()
Liver Data. (liver)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)
...................................................................................................................................................................................TCTGCCCACCTGCTCCCCCAGT.................................................22180.0020.00--7.006.00-7.004.005.004.007.003.00---5.004.001.001.002.001.00-----3.00----2.00-1.001.001.00-------1.00-1.00-1.00----1.00---1.00---1.00--------1.001.00-----------------------1.00----------1.00--1.001.00----1.00-1.001.00--------
.....................................................................................................................................TGGGTTGGAGAGGAGGTGGAGAACATGGGTCTTGGGTTGCACTCACTCTGCCCACCTGCTCCCCCAGA.................................................68139.004.0039.00----------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGCCCACCTGCTCCCCCAGA.................................................22126.0020.00-6.00-8.00--3.001.002.001.00-1.00------1.00----------------------1.00---------------------------------------1.00--------------------------------1.00----------
...................................................................................................................................................................................TCTGCCCACCTGCTCCCCCAG..................................................21120.0020.00-9.00---8.00-1.001.00-------------------------------------1.00------------------------------------------------------------------------------
.........................................................................................................................................TTGGAGAGGAGGTGGAGAACATGGGT.......................................................................................26119.0019.00---2.0013.00-----------------------1.00---------------------1.00--------------------1.00----------1.00------------------------------------------
..........................................................................................................................................TGGAGAGGAGGTGGAGAACATGGGTTA.....................................................................................27111.003.00--11.00--------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................TGGGTTGGAGAGGAGGTGGAGAACATGGGTCTTGGGTTGCACTCACTCTGCCCACCTGCTCCCCCAGT.................................................68110.004.0010.00----------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................TGCCACGTCACAACCTGCACAAGATTGCC.......2919.009.00---------------------2.00-2.00-----------2.001.00------------1.00------1.00--------------------------------------------------------------------
.........................................................................................................................................TTGGAGAGGAGGTGGAGAACATGT.........................................................................................249.000.00-9.00---------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................GTTGGAGAGGAGGTGGAGAACATGGG........................................................................................2618.008.00----------8.00------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TTGGAGAGGAGGTGGAGAACATGG.........................................................................................2418.008.00-----------2.00-----------------1.00-----------1.00-----------1.00----------------1.00---------------------------1.00-------------------1.00------
..........................................................................................................................................................................................................................ACGTCACAACCTGCACAAGATTGCCCCACT..3018.008.00------------8.00----------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................TGCCACGTCACAACCTGCACAAGATTGCCC......3017.007.00---------------------1.00-2.00-----------1.00-2.00--------------------------------------------------------1.00------------------------------
...................................................................................................................................................................................TCTGCCCACCTGCTCCCCCAGAT................................................2316.0020.00-------5.00-------1.00-------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGCCCACCTGCTCCCCCAGTA................................................2315.0020.00--------1.00--------2.001.00---------------------------------------------------------1.00------------------------------------------------
.........................................................................................................................................TTGGAGAGGAGGTGGAGAACATGGAT.......................................................................................2615.008.00------5.00----------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................TGGAGAGGAGGTGGAGAACATGG.........................................................................................2314.004.00---------------1.00---1.00-----------1.00------------------------------------------1.00--------------------------------------------------
...................................................................................................................................CCTGGGTTGGAGAGGAGGTGG..................................................................................................2114.004.00-------------4.00---------------------------------------------------------------------------------------------------------------
........................................................................................................................................GTTGGAGAGGAGGTGGAGAACATGGGT.......................................................................................2714.004.00--------------------------1.00-----------2.001.00-------------------------------------------------------------------------------------
.........................................................................................................................................TTGGAGAGGAGGTGGAGAACATGGT........................................................................................2514.008.00-------------------------------1.00-1.00--------------------------------1.00-------------1.00--------------------------------------------
.....................................................................................................................................................................................................................ATGCCACGTCACAACCTGCACAA..............2314.004.00----------------------4.00------------------------------------------------------------------------------------------------------
.....................................................................................................................................TGGGTTGGAGAGGAGGTGGAGAACATGGGTCTTGGGTTGCACTCACTCTGCCCACCTGCTCCCCCAG..................................................6714.004.004.00----------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................TGGAGAGGAGGTGGAGAACATGGGT.......................................................................................2513.003.00-----------------------------1.00------------1.00----------------------------------------1.00-----------------------------------------
.....................................................................................................................................................................................................................ATGCCACGTCACAACCTGCAC................2113.003.00---------------------------2.00---------------------------------------------------------1.00---------------------------------------
...................................................................................................................................................................................TCTGCCCACCTGCTCCCCCAGC.................................................2213.003.00---1.00----------1.00--------------------------------------------------------------------------1.00-----------------------------------
...................................................................................................................................................................................TCTGCCCACCTGCTCCCCCAGTT................................................2313.0020.00---------1.00-1.00------------------1.00----------------------------------------------------------------------------------------------
..........................................................................................................................................TGGAGAGGAGGTGGAGAACATGGGTCTTGGGTTGCACTCACTCTGCCCACCTGCTCCCCCAGT.................................................632.000.002.00----------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TTGGAGAGGAGGTGGAGAACAT...........................................................................................2212.002.00-------------------------------1.00----------------1.00----------------------------------------------------------------------------
....................................................................................................................................................................................................................TATGCCACGTCACAACCTGCACAAGATTGC........3012.002.00-------------------------------------------1.00----------------------------------------1.00----------------------------------------
.........................................................................................................................................TTGGAGAGGAGGTGGAGAAC.............................................................................................2012.002.00--1.00---------------------------------1.00----------------------------------------------------------------------------------------
.........................................................................................................................................TTGGAGAGGAGGTGGAGAACATGGA........................................................................................2512.008.00-----------1.00----1.00------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................TCACTCTGCCCACCTGCTCC.......................................................2012.002.00----------------------------2.00------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGCCCACCTGCTCCCCCAGTAGT..............................................2511.0020.00-------1.00---------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................TGGAGAGGAGGTGGAGCC..............................................................................................181.000.00--------------------1.00--------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................TCACTCTGCCCACCTGCTCCCCCAT..................................................2511.001.00-------------------------------------------------------------------------------1.00---------------------------------------------
.........................................CTCTACACACCACCAAT................................................................................................................................................................................................171.000.00-----------------------------------------------------------------------------------------------------1.00-----------------------
...................................................................................................................................................................................................................................CCTGCACAAGATTGCCCC.....1811.001.00--------1.00--------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................TGCACTCACTCTGCCTTG..............................................................181.000.00----------------1.00------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................CTGCCCACCTGCTCCCCCAGTT................................................221.000.00------------------1.00----------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................GCCTCTTCCCCACTATCCA................................191.000.00--------------------1.00--------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................ACGTCACAACCTGCACA...............1711.001.00--------1.00--------------------------------------------------------------------------------------------------------------------
..................................................................................................................................CCCTGGGTTGGAGAGGAGGTGGA.................................................................................................2311.001.00----------------1.00------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TTGGAGAGGAGGTGGAGAACATGA.........................................................................................241.000.00-1.00---------------------------------------------------------------------------------------------------------------------------
........................................................................................................AGATAGGACCTCAGCC..................................................................................................................................1621.001.00--------1.00--------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................TGGGTTGGAGAGGAGGTGGAGAACATGGGT.......................................................................................3011.001.00---------------------------------------------------------------------------------------------------------------1.00-------------
..........................................................................................................................................TGGAGAGGAGGTGGAGAACATGGG........................................................................................2411.001.00----------------------------------1.00------------------------------------------------------------------------------------------
.........................................................................................................................................TTGGAGAGGAGGTGGAGAACATGGAAT......................................................................................2711.008.00----------------1.00------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TTGGAGAGGAGGTGGAGAACATGAATT......................................................................................271.000.00------------------------------------------------------------------------------1.00----------------------------------------------
...............................................................................................................................................................................TCACTCTGCCCACCTGCTCCCCCA...................................................2411.001.00-----------1.00-----------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................TGCCACGTCACAACCTGCACAAGA............2411.001.00-------------------------------------------------1.00---------------------------------------------------------------------------
..........................................................................................................................................TGGAGAGGAGGTGGAGAACATG..........................................................................................2211.001.00--------------------------------------------------------------1.00--------------------------------------------------------------
..........................................................................................................................................TGGAGAGGAGGTGGAGAACATTGGT.......................................................................................251.000.00------------------------------------------------1.00----------------------------------------------------------------------------
............................................................................................................................................GAGAGGAGGTGGAGAACATGGGT.......................................................................................2311.001.00--------------------------1.00--------------------------------------------------------------------------------------------------
...ATTCGGCTTTCTGCACAT.....................................................................................................................................................................................................................................181.000.00---------------------------1.00-------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGCCCACCTGCTCCCCCAGTAAT..............................................2511.0020.00-------1.00---------------------------------------------------------------------------------------------------------------------
........................................................................................................................................GTTGGAGAGGAGGTGGAGAACAT...........................................................................................2311.001.00---------------------------------------------------------------------------------------------------------1.00-------------------
..........................................................................................................................................................................................................TCTTCCCCACTATGCCACGTCACAACC.....................2711.001.00-----------------------------------------------------------------1.00-----------------------------------------------------------
.......................................................................................................................................................................................................................GCCACGTCACAACCTGCACAAGAT...........2411.001.00-------------------------------------------------------------------------1.00---------------------------------------------------
...................................................................................................................................................................................TCTGCCCACCTGCTCCCCCA...................................................2011.001.00------------------------------------------------------------------------------------------------1.00----------------------------
.........................................................................................................................................TTGGAGAGGAGGTGGAGAACTTGT.........................................................................................2411.002.00------------------------------------------------------------------------------------------------------1.00----------------------
...................................................................AGGCAGTTGGCAGGAGCCACAGTCTAGTCCTGGTTTAAGATAGGACCTCAGCCCTGCCTGC..........................................................................................................................6111.001.001.00----------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................CTATGCCACGTCACAACCTGCACAAG.............2611.001.00--------1.00--------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................TGGAGAGGAGGTGGAGAACATGGA........................................................................................2411.004.00--------------------------------1.00--------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGCCCACCTGCTCCCCCAGG.................................................2211.0020.00---1.00-------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................GCCACGTCACAACCTGCACAT..............211.000.00-----------------------------------------------------------------------------1.00-----------------------------------------------
..........................................................................................................................................TGGAGAGGAGGTGGAGAACATGGTT.......................................................................................2511.004.00-----------------------------------------------------------------------------------------------------------------------1.00-----
.............................................................................................................................................AGAGGAGGTGGAGAACATGGG........................................................................................2111.001.00---------------------------------------1.00-------------------------------------------------------------------------------------
.............................................................................................................................TGCCTCCCTGGGTTGGAGAGGAGGTGGA.................................................................................................2811.001.00--------------------------------------------------1.00--------------------------------------------------------------------------
........................................................................................................................................................................................................................CCACGTCACAACCTGCACAAGATTGC........2611.001.00---------1.00-------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGCCCACCTGCTCCCCCATT.................................................2211.001.00-------------------------------------------------------------1.00---------------------------------------------------------------
...............................................................................................................................................................................................................CCCACTATGCCACGTCACTT.......................201.000.00----------------------------------------------------1.00------------------------------------------------------------------------
...................................................................................................................................CCTGGGTTGGAGAGGAGGTGGAG................................................................................................2311.001.00-----------1.00-----------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGCCCACCTGCTCCCCCAGTAA...............................................2411.0020.00-------------------------------------------------------------------------------------------------------------1.00---------------
..........................................................................................................................................................................................................TCTTCCCCACTATGCCACGTCACAACCTG...................2911.001.00---------1.00-------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................AGAGGAGGTGGAGAACATGGGTAG.....................................................................................241.000.00-----------------------------1.00-----------------------------------------------------------------------------------------------
...............................................................................................................................................................................TCACTCTGCCCACCTGCTCCCCC....................................................2311.001.00---------------------------------1.00-------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGCCCACCTGCTCCCCCAGTGA...............................................2411.0020.00-------------------1.00---------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................CCCACTATGCCACGTCACA........................1911.001.00------------------------------------------------------------------------1.00----------------------------------------------------
...................................................................................................................................................................................TCTGCCCACCTGCTCCCCCAAA.................................................2211.001.00-------------------1.00---------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................TGCCACGTCACAACCTGCACAAGATTGCCCC.....3111.001.00-------------------------------------------------------------------1.00---------------------------------------------------------
............................................................................................................................................................................................................TTCCCCACTATGCCACGTCAC.........................2111.001.00----------------------------------------------------------1.00------------------------------------------------------------------
..................................................................................................................................................................................................................ACTATGCCACGTCACAACCTG...................2111.001.00--------1.00--------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................TCACTCTGCCCACCTGCTCCCCCAG..................................................2511.001.00---------------------------------------------------1.00-------------------------------------------------------------------------
...................................................................................................................................................................................TCTGCCCACCTGCTCCCCCAGTTT...............................................2411.0020.00-----------------1.00-----------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................CACGTCACAACCTGCACAAGATT..........2311.001.00--------------------------------------------------------------------------------------1.00--------------------------------------
...................................................................................................................................................................................TCTGCCCACCTGCTCCCCCAGTCT...............................................2411.0020.00----------------------------------------------------------------1.00------------------------------------------------------------
....................................................................................................................................................................................................................TATGCCACGTCACAACCTGCACAAGATT..........2811.001.00-----------------1.00-----------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................CACAACCTGCACAAGATTT.........191.000.00----------------------------------1.00------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................GCCACGTCACAACCTGCACAAGATTGCCT......291.000.00---------------------1.00-------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................GCCACGTCACAACCTGCAC................1911.001.00---------------------------------------------------------------------------------------------------------------------1.00-------
...............................................................................................................................................................................TCACTCTGCCCACCTGCTCCCCCAGT.................................................2611.001.00---------1.00-------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGCCCACCTGCTCCCCCAGTTG...............................................2411.0020.00---1.00-------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................TGCACAAGATTGCCC......1530.330.33-----------------------------------------------------0.33-----------------------------------------------------------------------
...................................................................................................................................CCTGGGTTGGAGAGGAG......................................................................................................1740.250.25----------------------------------------------------------------------------------------------------------------------------0.25
...........................................................................................................................................................................................................................................AGATTGCCCCACTGG1550.200.20---------0.20-------------------------------------------------------------------------------------------------------------------
.........................................................................................................GATAGGACCTCAGCC..................................................................................................................................1550.200.20--------0.20--------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................CTTCCCCACTATGCC................................1580.120.12---------0.12-------------------------------------------------------------------------------------------------------------------

Antisense strand
TCAATTCGGCTTTCTGCAGTGCCCCTGTTCATAAATTGCCCCTCTACACACCACCAGTAACATCTTCAGGCAGTTGGCAGGAGCCACAGTCTAGTCCTGGTTTAAGATAGGACCTCAGCCCTGCCTGCCTCCCTGGGTTGGAGAGGAGGTGGAGAACATGGGTCTTGGGTTGCACTCACTCTGCCCACCTGCTCCCCCAGCCTCTTCCCCACTATGCCACGTCACAACCTGCACAAGATTGCCCCACTGG
....................................................................................................................................(((((..(((((((.((..(((....(((((..........))))))))..))..))).)))))))))..................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		mjLiverWT1()
Liver Data. (liver)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		mjLiverWT3()
Liver Data. (liver)		mjLiverKO2()
Liver Data. (Zcchc11 liver)		mjTestesWT1()
Testes Data. (testes)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR073954(GSM629280)
total RNA. (blood)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR553582(SRX182788)
source: Brain. (Brain)		mjTestesWT3()
Testes Data. (testes)		SRR206942(GSM723283)
other. (brain)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR077864(GSM637801)
18-30 nt small RNAs. (liver)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		GSM179088(GSM179088)
Developmentally regulated piRNA clusters implicate MILI in transposon control. (piwi testes)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR206940(GSM723281)
other. (brain)		SRR060845(GSM561991)
total RNA. (brain)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR206941(GSM723282)
other. (brain)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		mjTestesWT2()
Testes Data. (testes)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR095855BC8(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR037937(GSM510475)
293cand2. (cell line)		GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)		GSM640582(GSM640582)
small RNA in the liver with paternal control . (liver)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM510453(GSM510453)
newborn_rep9. (total RNA)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		mjTestesWT4()
Testes Data. (testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR037898(GSM510434)
ovary_rep3. (ovary)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR065046(SRR065046)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		mjLiverWT2()
Liver Data. (liver)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)
..............................................................................AGGAGCCACAGTCTAGTGAG........................................................................................................................................................ 2019.000.00-1.001.00-3.00-1.00----2.00------------4.00-------1.00-------1.00--1.00---1.00---------1.00------------------------------------------1.00--1.00---------------------
..............................................................................AGGAGCCACAGTCTAGTGA......................................................................................................................................................... 194.000.00--------------------1.00------------------------1.00--------------1.00-------------------------------------------------1.00--------------
................................................................................................................................................................................CACTCTGCCCACCTGCCGG....................................................... 192.000.00-------------2.00---------------------------------------------------------------------------------------------------------------
..............................................................................AGGAGCCACAGTCTAGTAA......................................................................................................................................................... 192.000.00------1.00--------------------------------------------------------1.00-------------------------------------------------------------
..............................................................................AGGAGCCACAGTCTAGTGAA........................................................................................................................................................ 202.000.00----------------------------------------------------------------------------------------1.00--------1.00---------------------------
..............................................................................AGGAGCCACAGTCTAGTGTG........................................................................................................................................................ 202.000.00--------------------------------------------1.001.00-------------------------------------------------------------------------------
........GCTTTCTGCAGTGCCCCT................................................................................................................................................................................................................................ 1831.331.33----------------------------------------------------0.33--------------------------------------------------------------------0.67-0.33-
................................................................................................................................................................................CACTCTGCCCACCTGCCG........................................................ 181.000.00--------------------------------------------------------------------------------------------1.00--------------------------------
..............................................................................AGGAGCCACAGTCTATGAA......................................................................................................................................................... 191.000.00-----------------------------------------------------------------------------------------------1.00-----------------------------
...........TTCTGCAGTGCCCCTCAC............................................................................................................................................................................................................................. 181.000.00------------------------------------------------------1.00----------------------------------------------------------------------
...............................................................................................................................................................................................................CCCACTATGCCACGTCACAACCTG................... 2411.001.00----------------------------------------------------------------------------------------------------------1.00------------------
..............................................................................AGGAGCCACAGTCTAGTG.......................................................................................................................................................... 181.000.00---------------------------------------------------------------------------------------------------1.00-------------------------
............TCTGCAGTGCCCCTGTTCAT.......................................................................................................................................................................................................................... 2011.001.00---------------------------------------------------------------------------1.00-------------------------------------------------
..............................................................................AGGAGCCACAGTCTAGTTTGG....................................................................................................................................................... 211.000.00--------------------------1.00--------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................CCAGCCTCTTCCCCATTA.................................... 181.000.00--------------------1.00--------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................CCAGCCTCTTCCCCACCGT................................... 191.000.00-------------------------------------------------------------------------------------------1.00---------------------------------
..............................................................................AGGAGCCACAGTCTAGTTAG........................................................................................................................................................ 201.000.00------------------------------------------------------------------------------------------1.00----------------------------------
..............................................................................AGGAGCCACAGTCTAGCGAG........................................................................................................................................................ 201.000.00-----------------------------------------------1.00-----------------------------------------------------------------------------
..............................................................................................................................................................................................GCTCCCCCAGCCTCTTCCCCACTA.................................... 2411.001.00---------------------------------------------------------------------------------------1.00-------------------------------------
................................................................................................................CCTCAGCCCTGCCTGCCTCCCTG................................................................................................................... 2311.001.00----------------------------------------------------------------------------------------------------------------1.00------------
..............................................................................AGGAGCCACAGTCTAGTTA......................................................................................................................................................... 191.000.00---1.00-------------------------------------------------------------------------------------------------------------------------
.............................................................................CAGGAGCCACAGTCTAGAAGG........................................................................................................................................................ 211.000.00------------------------------------------------------------------------------------------------------------------------1.00----
..............................................................................AGGAGCCACAGTCTAGTGAT........................................................................................................................................................ 201.000.00-------------1.00---------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................CCCAGCCTCTTCCCCCCGA.................................... 191.000.00----------------------------------------1.00------------------------------------------------------------------------------------
..........TTTCTGCAGTGCCCCTG............................................................................................................................................................................................................................... 1720.500.50--------------------------------------------------------------------------------------------------------------------------0.50--