ID: uc008gdl.7
GENE: Efemp2(8)
chr19:5480100-5480283+


(7)
AGO2.ip 		(1)
AGO3.ip 		(2)
B-CELL 		(12)
BRAIN 		(2)
CELL-LINE 		(1)
DCR.mut 		(1)
DGCR8.mut 		(9)
EMBRYO 		(1)
ESC 		(5)
FIBROBLAST 		(1)
LYMPH 		(6)
OTHER 		(1)
OTHER.ip 		(3)
OTHER.mut 		(3)
PIWI.ip 		(1)
PIWI.mut 		(1)
SKIN 		(1)
SPLEEN 		(15)
TESTES 		(1)
TOTAL-RNA 		(1)
UTERUS

Sense strand
CTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAGGTACAGGTGCTTGGGTGGGCAGGAGTTGAGCGGCTGGGAGCTTACTGTGAGTCCTAGAGTCCAACTCCACCTCCCTTGGCACAGATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACC
........................................................(((((.(((.((...(((((((.((..((((((.(((.....))))))))).)).))))))).)).)))..)))))....................................................
..................................................51.................................................................................134................................................
SizePerfect hitTotal NormPerfect NormSRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR037909(GSM510446)
newborn_rep2. (total RNA)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		mjTestesWT2()
Testes Data. (testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		GSM509276(GSM509276)
small RNA cloning by length. (testes)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR525238(SRA056111/SRX170314)
Second IgG control. (Blood)
.................................................................................................................ACTCCACCTCCCTTGGCACAGT.................................................22136.001.005.00--4.00-2.00-3.00-1.003.001.001.00-2.001.00-1.00----2.002.00------1.00-1.001.001.001.00---------1.00--1.001.00-------
.................................................................................................................ACTCCACCTCCCTTGGCACAGA.................................................2215.005.00-----2.00-----------1.001.00--------------------------------1.00-----
...................................................TACAGGTGCTTGGGTGGGCAGGAG.............................................................................................................2413.003.00-3.00-------------------------------------------------------
.......................................................................................................................................TATTGACGAGTGTGAAACAGGTGCAC.......................2612.002.00-------------------1.00----1.00--------------------------------
..............................GGCTACAAGGCTCTGCCAAGAT....................................................................................................................................222.000.00--1.00-1.00----------------------------------------------------
....................................................................................................................................................GAAACAGGTGCACACCAAT.................1912.002.00----1.00------------------------------------------------1.00---
......................................................AGGTGCTTGGGTGGGCAGGAGTTG..........................................................................................................2412.002.00------------1.00---1.00----------------------------------------
.....................................................................................................................................GATATTGACGAGTGTGAAACAGGTG..........................2512.002.00-------------1.00-------1.00-----------------------------------
.......................................................GGTGCTTGGGTGGGCAGGAGTTG..........................................................................................................2312.002.00---------2.00-----------------------------------------------
...................TACCAGCTGCTGGCTACAAGGCTCTGC..........................................................................................................................................2712.002.00-----------------------------------------1.00-1.00-------------
....................................................................................................................................................GAAACAGGTGCACACCAATGTTCT............2412.002.00-----------2.00---------------------------------------------
.............................TGGCTACAAGGCTCTGCCAAGATA...................................................................................................................................241.000.00--------1.00------------------------------------------------
......................CAGCTGCTGGCTACAAGGCTCTGCC.........................................................................................................................................2511.001.00------1.00--------------------------------------------------
.......................................................................................................................................TATTGACGAGTGTGAAACAGGTGCA........................2511.001.00-------------1.00-------------------------------------------
.........................................................................AGTTGAGCGGCTGGGAGCAA...........................................................................................201.000.00--------------------------------------------------1.00------
.................................................................................................................ACTCCACCTCCCTTGGCACAGTAA...............................................2411.001.00--------1.00------------------------------------------------
......................CAGCTGCTGGCTACAAGGCTCTGCCAA.......................................................................................................................................2711.001.00------1.00--------------------------------------------------
.......................................................GGTGCTTGGGTGGGCAGGAGTTGT.........................................................................................................2411.002.00----------------------------1.00----------------------------
...........................................................................TTGAGCGGCTGGGAGC.............................................................................................1611.001.00-1.00-------------------------------------------------------
.........................................................................AGTTGAGCGGCTGG.................................................................................................1411.001.00--------------------------1.00------------------------------
..................................................GTACAGGTGCTTGGGTGGGCAGGAGTTGAGCGGCTGGGAGCTTACTGTGAGTCCTAGAGTCCAACTCCACCTCCCTTGGCACAG..................................................8411.001.00-------------------------------1.00-------------------------
.................................................................................................................ACTCCACCTCCCTTGGCACAG..................................................2111.001.00---------------------------1.00-----------------------------
..........................TGCTGGCTACAAGGCTCTGCCA........................................................................................................................................2211.001.00--1.00------------------------------------------------------
.....................................................................................................................................GATATTGACGAGTGTGAAACAG.............................2211.001.00--1.00------------------------------------------------------
.........................................................................................................................................TTGACGAGTGTGAAACAGGTGCAC.......................2411.001.00----------------------------------------------1.00----------
..........................................................................................................................................TGACGAGTGTGAAACAGGT...........................1911.001.00------------------------------------1.00--------------------
...........................GCTGGCTACAAGGCTCTGCCAAGA.....................................................................................................................................241.000.00--------1.00------------------------------------------------
.........................................................................................................AGAGTCCAACTCCACCTCCCTAT........................................................231.000.00--1.00------------------------------------------------------
.....................................................................................................................CACCTCCCTTGGCACAGT.................................................181.000.00------------1.00--------------------------------------------
....................................................................................................................................................GAAACAGGTGCACACCAATGTTCTGAGGCC......3011.001.00-----------------------------------------------1.00---------
......................................................................................................................................ATATTGACGAGTGTGAAACAGGTGC.........................2511.001.00------1.00--------------------------------------------------
.......................................................................................................................................TATTGACGAGTGTGAAACAGGT...........................2211.001.00---------------------1.00-----------------------------------
.........................................................TGCTTGGGTGGGCAGGAGTTGT.........................................................................................................221.000.00---------------1.00-----------------------------------------
.......................................................GGTGCTTGGGTGGGCAGGAGTT...........................................................................................................2211.001.00-1.00-------------------------------------------------------
........................................................................................................................................ATTGACGAGTGTGAAACAGGT...........................2111.001.00--1.00------------------------------------------------------
....................................................................................................................................AGATATTGACGAGTGTGAAACAGGTG..........................2611.001.00-------------------1.00-------------------------------------
...........................................................................................................................................GACGAGTGTGAAACAGGT...........................1811.001.00----------------------------------------------------1.00----
.........................................................TGCTTGGGTGGGCAGGAGTTT..........................................................................................................211.000.00----------------1.00----------------------------------------
...........................................................................................................................................GACGAGTGTGAAACAGGTGCAC.......................2211.001.00----1.00----------------------------------------------------
...................TACCAGCTGCTGGCTACAAGGCTCT............................................................................................................................................2511.001.00--------------------1.00------------------------------------
....................................................................................................................CCACCTCCCTTGGCACAGT.................................................191.000.00-------------------------------------1.00-------------------
.................GCTACCAGCTGCTGGCTA.....................................................................................................................................................1811.001.00------------------1.00--------------------------------------
.......................AGCTGCTGGCTACAAGGCTCTGCCAA.......................................................................................................................................2611.001.00--------------------1.00------------------------------------
...........................................................................................................................................GACGAGTGTGAAACAGGTGCACACC....................2511.001.00----1.00----------------------------------------------------
...TCACTGCCCACAAGGCTACCAGCTGC...........................................................................................................................................................2611.001.00--------------------------------------1.00------------------
......................CAGCTGCTGGCTACAAGGCTCTGAA.........................................................................................................................................251.000.00------1.00--------------------------------------------------
............................................................................................................................................ACGAGTGTGAAACA..............................1430.330.33-------------------------------------------------------0.33-
.............................................................TGGGTGGGCAGGAGTTG..........................................................................................................1730.330.33------------------------------------------------------0.33--

Antisense strand
CTGTCACTGCCCACAAGGCTACCAGCTGCTGGCTACAAGGCTCTGCCAAGGTACAGGTGCTTGGGTGGGCAGGAGTTGAGCGGCTGGGAGCTTACTGTGAGTCCTAGAGTCCAACTCCACCTCCCTTGGCACAGATATTGACGAGTGTGAAACAGGTGCACACCAATGTTCTGAGGCCCAAACC
........................................................(((((.(((.((...(((((((.((..((((((.(((.....))))))))).)).))))))).)).)))..)))))....................................................
..................................................51.................................................................................134................................................
SizePerfect hitTotal NormPerfect NormSRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR037909(GSM510446)
newborn_rep2. (total RNA)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		mjTestesWT2()
Testes Data. (testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		GSM509276(GSM509276)
small RNA cloning by length. (testes)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR525238(SRA056111/SRX170314)
Second IgG control. (Blood)
...............................................................................GCGGCTGGGAGCTTACTGTGAGTCCTA.............................................................................. 2711.001.00---------------------------------------1.00-----------------
...........................................................................................................AGTCCAACTCCACCTCCCTTGGC...................................................... 2311.001.00--------------------------------------------1.00------------
.............................................................................................................................TTGGCACAGATATTGACGAGTGTGAA................................. 2611.001.00------------------------1.00--------------------------------
........................................................................................................................................................CAGGTGCACACCAATGTTCTGAGGCCCAA... 2911.001.00-----------------------------1.00---------------------------
.......................................................................................................................................................ACAGGTGCACACCAATGTTCTG........... 2211.001.00-------------------------1.00-------------------------------
...............................................................................................................................GGCACAGATATTGACGAGTGTGAAACA.............................. 2711.001.00----------------------------------------1.00----------------
........................................................................................................................CTCCCTTGGCACAGAATGA............................................. 191.000.00------------------------------------------1.00--------------
...........................................................................................................AGTCCAACTCCACCTC............................................................. 1640.250.25--------------------------------------------------------0.25