ID: uc008bfm.0
GENE: Lemd2
chr17:27327686-27327935-


(1)
AGO.mut 		(1)
AGO1.ip 		(5)
AGO2.ip 		(5)
B-CELL 		(16)
BRAIN 		(7)
CELL-LINE 		(1)
DCR.mut 		(1)
DGCR8.mut 		(9)
EMBRYO 		(7)
ESC 		(4)
FIBROBLAST 		(1)
HEART 		(2)
KIDNEY 		(4)
LIVER 		(1)
LUNG 		(2)
LYMPH 		(12)
OTHER 		(1)
OTHER.ip 		(6)
OTHER.mut 		(1)
OVARY 		(1)
PANCREAS 		(6)
PIWI.ip 		(2)
PIWI.mut 		(1)
SKIN 		(6)
SPLEEN 		(1)
TDRD1.ip 		(25)
TESTES 		(3)
THYMUS 		(4)
TOTAL-RNA 		(2)
UTERUS

Sense strand
ACCCATCACCGCCAGCCCCTTAGCTCTGTACCAAGGCTTGTGGCGCACAGGAGGTGAGGAAATCCCCAGTGCCTCACTTTGCCCTATCAACATGTCCACTGCTGGCTTATCCAAGTGTGGTAGAGCTTAGGAATGCCCGCCCCTCTGTGGGAATGGAGTGGTTCAGCCTGACCCAGCTGAGCGCTACCTTCTCCTTTCAGGCGGCGCATGAAGCGAGTATGGGACCGTGCTGTGGAATTCCTGGCTTCCA
................................................................................................................................................(((.((((..(((((.(((((((........)))))))))).))...))))..)))..................................................
..........................................................................................................................................139..........................................................200................................................
SizePerfect hitTotal NormPerfect NormmjLiverWT1()
Liver Data. (liver)		mjTestesWT1()
Testes Data. (testes)		SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)		SRR059765(GSM562827)
DN3_control. (thymus)		GSM475281(GSM475281)
total RNA. (testes)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR073954(GSM629280)
total RNA. (blood)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR553586(SRX182792)
source: Testis. (testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)		SRR095853(SRX039174)
sequencing of miRNA from wild type and diseas. (heart)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR206942(GSM723283)
other. (brain)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)		SRR306538(GSM750581)
19-24nt. (ago2 brain)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR060845(GSM561991)
total RNA. (brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		GSM566419(GSM566419)
Endougenous small RNA from mouse NIH3T3 cells, without MHV-68 infection. (fibroblast)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		mjTestesWT2()
Testes Data. (testes)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)
...............................................................................................................................................TCTGTGGGAATGGAGTGGTTCAG....................................................................................23117.0017.005.00--1.00---1.00------1.00--1.001.00---1.00------1.00-----------------------1.00-1.00------------------1.00--------1.00----------1.00------------------
.................................................................................................................................................TGTGGGAATGGAGTGGTTCAGC...................................................................................22113.0013.00---1.00--3.001.004.00----------------------2.00----------------------------------------------1.00-----------1.00----------------------
................................................................................................................................................................................................................TGAAGCGAGTATGGGACCGTGCTGT.................25111.0011.00--1.00--1.00-------1.00-------2.00-1.00----1.00--------------1.00--2.00----------------------------1.00-------------------------------------
...............................................................................................................................................TCTGTGGGAATGGAGTGGTTCA.....................................................................................22111.0011.00----------------3.00-----1.00--1.00-----------1.00-2.00-------1.00----------------1.00------------1.00-----------------------------------
...............................................................................................................................................TCTGTGGGAATGGAGTGGTTCAGC...................................................................................24110.0010.00---1.00---1.00------1.002.00--1.00-----------------------1.00------------------1.00-1.00-------------------------------------1.00-----------
...............................................................................................................................................TCTGTGGGAATGGAGTGGTTCAGA...................................................................................2418.0017.005.00------1.00---------------------------------------1.00----------------------------------------1.00------------------------
...............................CAAGGCTTGTGGCGCACAGGAG.....................................................................................................................................................................................................2216.006.00-6.00---------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................TGAAGCGAGTATGGGACCGTGCTGTGGAAT............3015.005.00--2.00-----------------------------1.00---------1.00-------1.00--------------------------------------------------------------
...............................................................................................................................................TCTGTGGGAATGGAGTGGTTCAGT...................................................................................2413.0017.00----------------------------------------1.00----------------1.00--------------------------------------1.00----------------
.....................................................................................................................................................GGAATGGAGTGGTTCAGCCTGACCCAGC.........................................................................2813.003.00-----------3.00-----------------------------------------------------------------------------------------------------
...............................................................................................................................................TCTGTGGGAATGGAGTGGTTC......................................................................................2113.003.00-------------------------------------1.00-------1.00------1.00------------------------------------------------------------
.................................................................................................................................................TGTGGGAATGGAGTGGTTCAG....................................................................................2113.003.00---------------1.00-----------------------------1.00-----------------------1.00-------------------------------------------
.................................................................................................................................................TGTGGGAATGGAGTGGTTCAGA...................................................................................2213.003.00-----------------1.00--------------------------2.00--------------------------------------------------------------------
...............................................................................................................................................TCTGTGGGAATGGAGTGGTTCAGCA..................................................................................2512.0010.00------------------------------------------------------------------1.00-------------------------------1.00--------------
.............................................................................................................................................................................................................GCATGAAGCGAGTATGGGACCGTGC....................2512.002.00-----2.00-----------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................CCGTGCTGTGGAATTCCTGGCTTC..2412.002.00----------------------------------------------------------------------1.00---------1.00--------------------------------
......................................................................................................................................................................................................................GAGTATGGGACCGTGCTGTGGAATTCCTGGC.....3112.002.00---------1.00-------------------------------------------------------1.00-----------------------------------------------
...................................................................................................................................................................................................................................TGCTGTGGAATTCCTGGCTTCCAATGT272.000.00--------------------------------------2.00--------------------------------------------------------------------------
......................................................................................................................................................................................................................GAGTATGGGACCGTGTT...................172.000.00----------------------------------2.00------------------------------------------------------------------------------
...............................................................................................................................................TCTGTGGGAATGGAGTGGTT.......................................................................................2012.002.00--------------1.00--1.00-----------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................GGGACCGTGCTGTGGAAT............1812.002.00---------------------------1.00--1.00----------------------------------------------------------------------------------
.................................................................................................................................................................................TGAGCGCTACCTTCTCCTTTCA...................................................2212.002.00------------------------------------1.00-----------------------1.00----------------------------------------------------
...........................................................................................................................................................................................................................TGGGACCGTGCTGTGGAATTCCTGGC.....2612.002.00--------------------1.00---------------------------------------------------1.00----------------------------------------
................................................................................................................................................................................................................TGAAGCGAGTATGGGACCGTGCTGTGT...............272.000.00----1.00--------------------------------------1.00---------------------------------------------------------------------
.....................................................................................ATCAACATGTCCACTGCTGGCTT..............................................................................................................................................2312.002.00------1.00--------------------1.00-------------------------------------------------------------------------------------
................................................................................................................................................................................................................TGAAGCGAGTATGGGACCGTGCTG..................2411.001.00-------------1.00---------------------------------------------------------------------------------------------------
...............................................................................................................................................TCTGTGGGAATGGAGTGGTTT......................................................................................2111.002.00-------------------------------------------------------------------------------------1.00---------------------------
................................................................................................................AAGTGTGGTAGAGCTTAGG.......................................................................................................................1911.001.00------------------1.00----------------------------------------------------------------------------------------------
................................................................................................................................................................................................................TGAAGCGAGTATGGGACCGTGCTGTGGAAAT...........3111.001.00--------------------1.00--------------------------------------------------------------------------------------------
...............................................................................................................................................TCTGTGGGAATGGAGTGGTTCT.....................................................................................2211.003.00---------------------------------------------------------------------------------1.00-------------------------------
.....................................................................................................................................................................................................................CGAGTATGGGACCGTGCTGTGGAAT............2511.001.00--1.00--------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................ACCGTGCTGTGGAATTCCTGGCTTC..2511.001.00--------------------------------------------------------------------------------------------------------1.00--------
..........................TGTACCAAGGCTTGTGGCGCA...........................................................................................................................................................................................................2111.001.00-------------------------------------------------------------------1.00---------------------------------------------
.............................................................................TTTGCCCTATCAACATGTCCACTGCT...................................................................................................................................................2611.001.00--------------------------------------------------------------1.00--------------------------------------------------
............................................................................................................................................................................................................................GGGACCGTGCTGTGGAATTCCTGGCTTCC.2911.001.00--------------------------------------------------------------------------------------------1.00--------------------
..............................................................................................................................................CTCTGTGGGAATGGAGTGGTTC......................................................................................2211.001.00---------------------------------------------------------------------------------------------------1.00-------------
...............................................................................................................................................TCTGTGGGAATGGAGTGGTTCAGCCT.................................................................................2611.001.00----------------------------1.00------------------------------------------------------------------------------------
...............................................................................................................................................TCTGTGGGAATGGAGTGGTTCAT....................................................................................2311.0011.00-----------------------------------------------------------1.00-----------------------------------------------------
.................................................................................................................................................TGTGGGAATGGAGTGGTTC......................................................................................1911.001.00------------------------------------------------------------------------------------1.00----------------------------
.................................................................................................................................................TGTGGGAATGGAGTGGTTCAGCT..................................................................................2311.0013.00---1.00-------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................TATGGGACCGTGCTGTGGAATTCCTGGA.....281.000.00----------------------------------------------------------------------------------------------------------1.00------
..............................................................................................................................................................................................................CATGAAGCGAGTATGGGACCG.......................2111.001.00---------1.00-------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................GAAGCGAGTATGGGACCGTGCTGTGGAAT............2911.001.00--------------------------------1.00--------------------------------------------------------------------------------
.........................................................................................................................................................................................................................TATGGGACCGTGCTGTGGAATTCCTGGCT....2911.001.00---------1.00-------------------------------------------------------------------------------------------------------
...............................................................................................................................................TCTGTGGGAATGGAGTGGTTTTT....................................................................................2311.002.00----------------------------------------1.00------------------------------------------------------------------------
.................................................................................................................................................................................................................................CGTGCTGTGGAATTCCTGGCTTCCA2511.001.00-----------------------------------------1.00-----------------------------------------------------------------------
....................................................................................................................................................................................................................GCGAGTATGGGACCGTGCTGTGG...............2311.001.00-----------------------1.00-----------------------------------------------------------------------------------------
............................................................................................................................................................................................................................GGGACCGTGCTGTGGAATT...........1911.001.00---1.00-------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................TGGGACCGTGCTGTGGAATTCCTGGCTTC..2911.001.00-------------------------------------------------------------------------------------------------------1.00---------
................................................................................................................................................................................................................TGAAGCGAGTATGGGACCGTGCTGTGGAAA............3011.001.00-------------1.00---------------------------------------------------------------------------------------------------
...............................................................................................................................................TCTGTGGGAATGGAGTGGTTCATCT..................................................................................2511.0011.00---------------------------------------------------------------------------------------------1.00-------------------
.................................................................................................................................................................................TGAGCGCTACCTTCTCCTTTC....................................................2111.001.00------------------------------------------------------------------------------------------------------1.00----------
.................................................................................................................................................................................................................................CGTGCTGTGGAATTCCTGGCTTCCAAA2711.001.00--------------------------------------------------------------------1.00--------------------------------------------
.....................................................................................................................................................................................CGCTACCTTCTCCTTTCAGA.................................................201.000.00--------------------------1.00--------------------------------------------------------------------------------------
.................................................................................................................................................................................TGAGCGCTACCTTCTCCTTTCAG..................................................2311.001.00------------------------------------1.00----------------------------------------------------------------------------
................................................................................................................................................CTGTGGGAATGGAGTGGTTCAA....................................................................................221.000.00---------------------------------------------------------------------------------------------------------1.00-------
................................................................................................................................................................................................................TGAAGCGAGTATGGGACCGTGCTGTGGAA.............2911.001.00----------------------------------------------------------------------------------1.00------------------------------
......................................................................................................................................................................................................................GAGTATGGGACCGTGCTGTGGAATTCCTGT......301.000.00--1.00--------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................GGGACCGTGCTGTGGAA.............1711.001.00------------------------------1.00----------------------------------------------------------------------------------
..............................................................................................TCCACTGCTGGCTTATCTCA........................................................................................................................................201.000.00------------------------------------------------1.00----------------------------------------------------------------
................................................................................................................AAGTGTGGTAGAGCTTAGGAATGC..................................................................................................................2411.001.00----------------------1.00------------------------------------------------------------------------------------------
.................................................................................................................................................TGTGGGAATGGAGTGGTTCAGCAA.................................................................................2411.0013.00-----------------------------1.00-----------------------------------------------------------------------------------
...............................................................................................................................................................................................................ATGAAGCGAGTATGGGACCGTGCTGT.................2611.001.00---------------------------------1.00-------------------------------------------------------------------------------
.................................................................................................................................................................................................................GAAGCGAGTATGGGACCGTGCTGTGG...............2611.001.00-----------------------------------------1.00-----------------------------------------------------------------------
.............................................................................................................................................................................................................................GGACCGTGCTGTGGAATTC..........1911.001.00----------------------------------------------------------1.00------------------------------------------------------
................................................................................................................................................................................CTGAGCGCTACCTTCTCCTTTCAG..................................................2411.001.00-------------------------------------------------------------------------------1.00---------------------------------
.....................................................................................................................................................................................................................................CTGTGGAATTCCTGGCGC...181.000.00----------------------------------------------------------------------------------------------------1.00------------
.................................................................................................................................................TGTGGGAATGGAGTGGTTCAGCA..................................................................................2311.0013.00-------------------------------------------------------------------------------------------1.00---------------------
.................................................................................................................................................................................................................................CGTGCTGTGGAATTCCCTC......191.000.00---------------------------------------------------1.00-------------------------------------------------------------
................................................................................................................................................................................................................TGAAGCGAGTATGGGACCGTGCTGTGAA..............281.000.00----1.00------------------------------------------------------------------------------------------------------------
...............................................................................................................................................TCTGTGGGAATGGAGTGGTTCCGC...................................................................................2411.003.00-------------------------------------------------------------------------------------------------1.00---------------
................................................................................................................................................................................................................TGAAGCGAGTATGGGACCGTGC....................2211.001.00---------------------------------------------------------------------------------------1.00-------------------------
...................................................................................................................................................................................................................AGCGAGTATGGGACCAAA.....................181.000.00----------1.00------------------------------------------------------------------------------------------------------
...................TTAGCTCTGTACCAAGGCTTGTGGCGC............................................................................................................................................................................................................2711.001.00----1.00------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................GTGGAATTCCTGGCTTCC.1820.500.50---------0.50-------------------------------------------------------------------------------------------------------
.....................................................................................................................TGGTAGAGCTTAGGA......................................................................................................................1540.250.25-------------------------------------------------------------------------------------------------------------0.25---
.....................................................................................................................TGGTAGAGCTTAGGAC.....................................................................................................................1640.250.25-------------------------------------------------------------------------------------------------------------0.25---
.....................................................................................................................TGGTAGAGCTTAGGACTGT..................................................................................................................1940.250.25--------------------------------------------------------------------------------------------------------------0.25--
.....................................................................................................................TGGTAGAGCTTAGGACTG...................................................................................................................1840.250.25---------------------------------------------------------------------------------------------------------------0.25-
.....................................................................................................................TGGTAGAGCTTAGGACAA...................................................................................................................1840.250.25--------------------------------------------------------------------------------------------------------------0.25--
...................................................................................................................TGTGGTAGAGCTTAG........................................................................................................................1570.140.14----------------------------------------------------------------------------------------------------------------0.14

Antisense strand
ACCCATCACCGCCAGCCCCTTAGCTCTGTACCAAGGCTTGTGGCGCACAGGAGGTGAGGAAATCCCCAGTGCCTCACTTTGCCCTATCAACATGTCCACTGCTGGCTTATCCAAGTGTGGTAGAGCTTAGGAATGCCCGCCCCTCTGTGGGAATGGAGTGGTTCAGCCTGACCCAGCTGAGCGCTACCTTCTCCTTTCAGGCGGCGCATGAAGCGAGTATGGGACCGTGCTGTGGAATTCCTGGCTTCCA
................................................................................................................................................(((.((((..(((((.(((((((........)))))))))).))...))))..)))..................................................
..........................................................................................................................................139..........................................................200................................................
SizePerfect hitTotal NormPerfect NormmjLiverWT1()
Liver Data. (liver)		mjTestesWT1()
Testes Data. (testes)		SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)		SRR059765(GSM562827)
DN3_control. (thymus)		GSM475281(GSM475281)
total RNA. (testes)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR073954(GSM629280)
total RNA. (blood)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR553586(SRX182792)
source: Testis. (testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)		SRR095853(SRX039174)
sequencing of miRNA from wild type and diseas. (heart)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR206942(GSM723283)
other. (brain)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)		SRR306538(GSM750581)
19-24nt. (ago2 brain)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR060845(GSM561991)
total RNA. (brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		GSM566419(GSM566419)
Endougenous small RNA from mouse NIH3T3 cells, without MHV-68 infection. (fibroblast)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		mjTestesWT2()
Testes Data. (testes)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)
................................................................................................................................................................................CTGAGCGCTACCTTCTTC........................................................ 1812.000.00----------2.00-2.00-----------1.001.00---------2.00------------------1.00------------------1.00--1.00-------------------------------1.00----
............................................................................................................................................................................CCAGCTGAGCGCTACCTTCTCCTTTCA................................................... 2714.004.00----1.00---------------1.00--1.00---------1.00-------------------------------------------------------------------------------
................................................................................................................................................................................CTGAGCGCTACCTTCTTA........................................................ 182.000.00------------1.00----------------------------------------------------------------------------1.00-----------------------
................................................................................................................................................................................CTGAGCGCTACCTTCTGC........................................................ 182.000.00-------------------------------------------------1.00------------------------------------1.00--------------------------
...............................................................................................................................TAGGAATGCCCGCCCCTCTT....................................................................................................... 201.000.00-----------------------------------------------------------------------------------------------1.00-----------------
..............................................................................................................................................................................................................CATGAAGCGAGTATGGGACCGTG..................... 2311.001.00-----1.00-----------------------------------------------------------------------------------------------------------
................................................................................................................................................................................CTGAGCGCTACCTTCT.......................................................... 161.000.00------------------------1.00----------------------------------------------------------------------------------------
..CCATCACCGCCAGCCCCTCCGA.................................................................................................................................................................................................................................. 221.000.00--------------------------------------------------------1.00--------------------------------------------------------
................................................................................................................................................................................CTGAGCGCTACCTTCTA......................................................... 171.000.00-------------------1.00---------------------------------------------------------------------------------------------
................................................................................................................................................................................CTGAGCGCTACCTTCTC......................................................... 171.000.00-------------------1.00---------------------------------------------------------------------------------------------
...........CCAGCCCCTTAGCTCTGA............................................................................................................................................................................................................................. 181.000.00--------------------------1.00--------------------------------------------------------------------------------------
.............................................................ATCCCCAGTGCCTCACTTTGCCCTA.................................................................................................................................................................... 2511.001.00-----------------------------------------------------------------------1.00-----------------------------------------
.............................................................................................................................................................................CAGCTGAGCGCTACCTTCTCCTTTCA................................................... 2611.001.00---------------------1.00-------------------------------------------------------------------------------------------
................................................................................................................................................................GTTCAGCCTGACCCAGACC....................................................................... 191.000.00-------------------1.00---------------------------------------------------------------------------------------------
.................................................................................................................................................................................TGAGCGCTACCTTCT.......................................................... 1530.330.33------------------------------------------------0.33----------------------------------------------------------------
.................................................................................................................................................................................TGAGCGCTACCTTCTATC....................................................... 180.330.00-------------------------------------------------0.33---------------------------------------------------------------