ID: uc008bco.4
GENE: Rab40C(4)
chr17:26028242-26028491-


(1)
AGO.mut 		(1)
AGO1.ip 		(5)
AGO2.ip 		(11)
BRAIN 		(1)
CELL-LINE 		(2)
DCR.mut 		(8)
EMBRYO 		(2)
ESC 		(2)
FIBROBLAST 		(4)
LIVER 		(8)
OTHER 		(3)
OTHER.mut 		(2)
PIWI.ip 		(1)
SKIN 		(3)
SPLEEN 		(1)
TDRD1.ip 		(13)
TESTES 		(3)
TOTAL-RNA 		(1)
UTERUS

Sense strand
CCCTGTCTGACCTGGGCTTCTGCCTTGCCCATGGCTGCCATACAGCATGAGCTAGGCTGGTGCCTGAGAAAGCCATAGCCGAGGGCAGTGAGCACCATCATTCTGTTCCCTCGGGGACATTGTGGGATTTGAGTACTGGGCAGGAGGACCTGAGTGAAGCAGTTGCTGATGGACACTCTCACCCCTCTGCTTCCTCCCAGGGATAGACTATAAGACTACCACCATCCTCCTGGATGGACGGCGTGTCAAG
.......................................................................................................................................(((((.((((((....(((((.(((....)))......)))))...........)))))))))))..................................................
.................................................................................................................................130..........................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		GSM510453(GSM510453)
newborn_rep9. (total RNA)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		mjTestesWT2()
Testes Data. (testes)		SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR206941(GSM723282)
other. (brain)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR037930(GSM510468)
e7p5_rep4. (embryo)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR206939(GSM723280)
other. (brain)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR073955(GSM629281)
total RNA. (blood)		SRR073954(GSM629280)
total RNA. (blood)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)		SRR553586(SRX182792)
source: Testis. (testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)
......................................................................................................................................ACTGGGCAGGAGGACCTGAGTGA.............................................................................................23115.0015.00--2.003.00-1.001.001.00--1.00------------------1.00---1.001.00---1.00-1.00------------1.00---
......................................................................................................................................................TGAGTGAAGCAGTTGCTGATGGACA...........................................................................25110.0010.0010.00--------------------------------------------------------
....................................................................................................................................................................................ACCCCTCTGCTTCCTCCCAGAAT...............................................235.000.00---------2.00-1.00---1.00---------1.00-------------------------------
......................................................................................................................................ACTGGGCAGGAGGACCTGAGTGT.............................................................................................2315.002.00--------------1.00---------1.00------------1.00-----1.00----------1.00--
......................................................................................................................................ACTGGGCAGGAGGACCTGAGT...............................................................................................2114.004.00----------------1.00-1.00-1.00-----1.00------------------------------
.....................................................................................................................................TACTGGGCAGGAGGACCTGAGTGA.............................................................................................2414.004.00--1.00-----1.00----------1.00--1.00----------------------------------
......................................................................................................................................ACTGGGCAGGAGGACCTGAGTG..............................................................................................2212.002.00-----------1.00---1.00-----------------------------------------
...............................................TGAGCTAGGCTGGTGCCTGAG......................................................................................................................................................................................2112.002.00-2.00-------------------------------------------------------
..........................................................................................................................TGGGATTTGAGTACTGGGCA............................................................................................................2012.002.00-----------------2.00---------------------------------------
........................................................................CCATAGCCGAGGGCAGTGAGT.............................................................................................................................................................212.000.00----2.00----------------------------------------------------
.....................................................................................................................................................................................CCCCTCTGCTTCCTCCCAGT.................................................202.000.00-------------2.00-------------------------------------------
...............................................TGAGCTAGGCTGGTGCCTGAGAAC...................................................................................................................................................................................242.000.00-2.00-------------------------------------------------------
......................................................................................................................................ACTGGGCAGGAGGACCTGA.................................................................................................1911.001.00----------------------------1.00----------------------------
..................................................................................................................................................................................................................TAAGACTACCACCATCCTCCTGGATGGACGGC........3211.001.00---------------------------------------------------1.00-----
...............................................................................CGAGGGCAGTGAGCAAAG.........................................................................................................................................................181.000.00-------------------------------1.00-------------------------
.....................................................................................................................................TACTGGGCAGGAGGACCTGAGTGT.............................................................................................241.000.00--------------1.00------------------------------------------
..............................................................................................................................................GGAGGACCTGAGTGAAGCAGTTGCTGATA...............................................................................291.000.00----1.00----------------------------------------------------
......................................................................................................................................ACTGGGCAGGAGGACCTGAT................................................................................................2011.001.00-----1.00---------------------------------------------------
................................................................................................................................................................................................................................TCCTCCTGGATGGACGGCGTGTCAAGT271.000.00---------------------------------------------1.00-----------
.....................................................................................................................................TACTGGGCAGGAGGACCTGAGTA..............................................................................................2311.001.00--1.00------------------------------------------------------
.....................................................................................................................................TACTGGGCAGGAGGACCTGAG................................................................................................2111.001.00------1.00--------------------------------------------------
...........................................................................................................................................................................................................TAGACTATAAGACTACCACCATCC.......................2411.001.00--------1.00------------------------------------------------
......................................................................................................................................ACTGGGCAGGAGGACCTGAGTGAA............................................................................................2411.001.00------------------------------------1.00--------------------
............................................................................................................................................CAGGAGGACCTGAGTGAAGCAG........................................................................................2211.001.00-------------------1.00-------------------------------------
......................................................................................................................................ACTGGGCAGGAGGACCTGAGCG..............................................................................................221.000.00----------1.00----------------------------------------------
.............................................................................................................................GATTTGAGTACTGGGCAGGAGGACCTGAGTGAA............................................................................................3311.001.00-------------------------------------------------------1.00-
...............................................TGAGCTAGGCTGGTGCCTATT......................................................................................................................................................................................211.000.00-----------------------------------------1.00---------------
......................................................................................................................................ACTGGGCAGGAGGACCTGT.................................................................................................191.000.00----------------1.00----------------------------------------
.....................................................................................................................................TACTGGGCAGGAGGACCTGA.................................................................................................2011.001.00-----------------------1.00---------------------------------
....................................................................................................................................................................................ACCCCTCTGCTTCCTCCAAGA.................................................211.000.00--------------------------------------------1.00------------
.............................................................................................................................................................AGCAGTTGCTGATGGCG............................................................................171.000.00--------------------------------------------------------1.00
......................................................................................................................................................TGAGTGAAGCAGTTGCTGATGGA.............................................................................2311.001.00------------------------------------------1.00--------------
.....................................................................................................................................TACTGGGCAGGAGGACCTGAGTT..............................................................................................2311.001.00---------------------------1.00-----------------------------
.....................................................................................................................................................................................CCCCTCTGCTTCCTCCCAGTTT...............................................221.000.00---------------------------------------1.00-----------------
......................................................................................................................................ACTGGGCAGGAGGACCTGAGGGAA............................................................................................241.000.00---------------------1.00-----------------------------------
......................................................................................................................................ACTGGGCAGGAGGACCTGAGGGA.............................................................................................231.000.00------------1.00--------------------------------------------
..........................................................................................................................................................................................................ATAGACTATAAGACTACCACCA..........................2211.001.00------------------------------------------------1.00--------
......................................................................................................................................ACTGGGCAGGAGGACCTGAGTGAG............................................................................................2411.0015.00------------------------------1.00--------------------------
...............................................TGAGCTAGGCTGGTGCCTGAGA.....................................................................................................................................................................................2211.001.00-------1.00-------------------------------------------------
.......................................................................................................................................CTGGGCAGGAGGACCTGAGT...............................................................................................2011.001.00-----------------------------------------------1.00---------
....................................................................................................................................................................................ACCCCTCTGCTTCCTCCCAGA.................................................211.000.00----------------------------------------------1.00----------
..................................................................................................................................................................................................................TAAGACTACCACCATCCTCCTGGATGGACGG.........3111.001.00------------------1.00--------------------------------------
......................................................................................................................................ACTGGGCAGGAGGACCTGAAAAA.............................................................................................2311.001.00------1.00--------------------------------------------------
.....................................................................................................................................TACTGGGCAGGAGGACCTGAGT...............................................................................................2211.001.00-----1.00---------------------------------------------------

Antisense strand
CCCTGTCTGACCTGGGCTTCTGCCTTGCCCATGGCTGCCATACAGCATGAGCTAGGCTGGTGCCTGAGAAAGCCATAGCCGAGGGCAGTGAGCACCATCATTCTGTTCCCTCGGGGACATTGTGGGATTTGAGTACTGGGCAGGAGGACCTGAGTGAAGCAGTTGCTGATGGACACTCTCACCCCTCTGCTTCCTCCCAGGGATAGACTATAAGACTACCACCATCCTCCTGGATGGACGGCGTGTCAAG
.......................................................................................................................................(((((.((((((....(((((.(((....)))......)))))...........)))))))))))..................................................
.................................................................................................................................130..........................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		GSM510453(GSM510453)
newborn_rep9. (total RNA)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		mjTestesWT2()
Testes Data. (testes)		SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR206941(GSM723282)
other. (brain)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR037930(GSM510468)
e7p5_rep4. (embryo)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR206939(GSM723280)
other. (brain)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR073955(GSM629281)
total RNA. (blood)		SRR073954(GSM629280)
total RNA. (blood)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)		SRR553586(SRX182792)
source: Testis. (testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)
..........................................................................................................................................................................................CTGCTTCCTCCCAGGGATAGACTATAT..................................... 271.000.00----------------------------------------------------1.00----
.........................................................................................................................................................................TGGACACTCTCACCCCCC............................................................... 181.000.00-----------------------------------1.00---------------------
.....................................................................AAGCCATAGCCGAGGGCAGTGAGCAC........................................................................................................................................................... 2611.001.00--------------------------------------------------1.00------
..................................................................................................................................................................................................................TAAGACTACCACCATCGAT..................... 191.000.00------------1.00--------------------------------------------
...............................................................................................................................................................................CTCTCACCCCTCTGCTACGA....................................................... 201.000.00--------------------------------1.00------------------------
.......................................................................................................................................................................................CCTCTGCTTCCTCCCAGGGATAGACTA........................................ 2711.001.00-------------------------------------------------1.00-------