ID: uc007vpm.2
GENE: Ttc35(3)
chr15:43326301-43326759+


(12)
AGO2.ip 		(5)
B-CELL 		(23)
BRAIN 		(4)
CELL-LINE 		(2)
DCR.mut 		(2)
DGCR8.mut 		(10)
EMBRYO 		(9)
ESC 		(3)
FIBROBLAST 		(1)
HEART 		(2)
LIVER 		(2)
LYMPH 		(9)
OTHER 		(1)
OTHER.ip 		(3)
OTHER.mut 		(4)
PIWI.ip 		(1)
PIWI.mut 		(3)
SPLEEN 		(17)
TESTES

Sense strand
AGCAGGTCATGATTGCAGCCCTAGACTATGGTCGGGATGACTTGGCATTGGTAAGTACTTAAATTAACTGTATTTTACTCTGTATTTGTTTTATGAGTTATAAATTAGGAAGTAGTTAAGGTTTGCTGTGGGGCATGTACTGAGTGCTTTCTGTAGCAAGTCTTGAATGCTTTTCTAAGTACGAGACTAGCCTGTAACTCAGTGGCAGGATGCTTGGCTAGCTTGTACAAGGTTCTGGATTTACTCTCTAGCATCATGAACACAAATTAAATAAATAAAATACCCATACCAATAAAATGTTAAGTGAAACTCTCATTAGAAACTCATTAGACCATTTTTAATGGATTATTTTGAAGATGTAATGGTGGTTGCTCAAGTCGTTATTTTGTTTAACCCATTATGTTTTCAGTTTTGTCTTCAGGAATTAAGAAGACAATTCCCTGGTAGTCACAGAGTTAA
...............................................................................................................................................................................................................................................................................................................................................................(((((((((((((..(((((..((((.......))))..))))))))))))))))))...................................................
........................................................................................................................................................................................................................................................................................................................................................345.............................................................409................................................
SizePerfect hitTotal NormPerfect NormSRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		mjLiverWT1()
Liver Data. (liver)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)		SRR206940(GSM723281)
other. (brain)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR073954(GSM629280)
total RNA. (blood)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR037904(GSM510440)
brain_rep1. (brain)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR014231(GSM319955)
16.5 dpc total. (testes)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR037906(GSM510442)
brain_rep3. (brain)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR206942(GSM723283)
other. (brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR023848(GSM307157)
mEFsmallrna_rep1. (cell line)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)		SRR553586(SRX182792)
source: Testis. (testes)
...........................ATGGTCGGGATGACTTGGCATT..........................................................................................................................................................................................................................................................................................................................................................................................................................22162.0062.0032.0014.00--5.004.004.00---1.00--2.00--------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................TTAACCCATTATGTTTTCAGA.................................................21112.004.00--3.005.00---2.00---1.00------------------------------------------1.00---------------------------------
...........................ATGGTCGGGATGACTTGGCAT...........................................................................................................................................................................................................................................................................................................................................................................................................................21112.0012.004.003.00---2.002.00-----1.00---------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................TTTGAAGATGTAATGGTGGTTGC.......................................................................................2318.008.00-1.00-----2.00---1.00--------1.00---------1.00---------------1.00---1.00-------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................TTAACCCATTATGTTTTCAGTT................................................2218.008.00--1.00--------1.00---4.00-------------1.00------------------------------------1.00---------------------
.......................GACTATGGTCGGGATGACTTGGCATT..........................................................................................................................................................................................................................................................................................................................................................................................................................2617.007.00--------1.001.00-------2.00---1.00-------------2.00----------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................TTTAACCCATTATGTTTTCAGT.................................................2217.007.00------------------1.00------2.00--1.00----1.00-------------------------1.00-----1.00----------------------
.............................................................................................................................................................................................................................................................................................................................................................TTTGAAGATGTAATGGTGGTTGCTC.....................................................................................2517.007.00---5.00--------------------------------------------1.00------1.00--------------------------------
.............................................................................................................................................................................................................................................................................................................................................................TTTGAAGATGTAATGGTGGTTGCT......................................................................................2416.006.00-------2.00----1.00-----------------1.00-------2.00-------------------------------------------------
............................................................................................................................................................................................................GCAGGATGCTTGGCTAGCTTGTACAAGGTTCTGGATTTACTCTCTAGCATCATGAACACAA..................................................................................................................................................................................................6114.004.00----------------4.00-----------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................TTAACCCATTATGTTTTCAG..................................................2014.004.00--1.00-------------------2.00-------------------------------------1.00---------------------------
......................AGACTATGGTCGGGATGACTTGGCATT..........................................................................................................................................................................................................................................................................................................................................................................................................................2714.004.00--------1.002.00--------------------------------1.00---------------------------------------------
...........................ATGGTCGGGATGACTTGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................1923.003.000.501.50-----------0.50-------------------------0.50------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTAACCCATTATGTTTTCAGA.................................................253.000.00--2.00----1.00--------------------------------------------------------------------------------
......................AGACTATGGTCGGGATGACTTGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2423.003.001.500.50--0.500.50----------------------------------------------------------------------------------
.....................TAGACTATGGTCGGGATGACTTGGCATT..........................................................................................................................................................................................................................................................................................................................................................................................................................2813.003.00---------1.00-----------1.00----------------------------------------1.00-------------------------
......................AGACTATGGTCGGGATGACTTGGCAT...........................................................................................................................................................................................................................................................................................................................................................................................................................2613.003.00-----1.00-----------2.00----------------------------------------------------------------------
.........................CTATGGTCGGGATGACTTGGCATT..........................................................................................................................................................................................................................................................................................................................................................................................................................2413.003.00-1.00--1.00--------------1.00--------------------------------------------------------------------
..........................TATGGTCGGGATGACTTGGCATTGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................263.000.00---------2.00-----------------------------------------------------1.00------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................TTAACCCATTATGTTTTCAGT.................................................2113.003.00-----------1.00-----------------------------------------------------------1.00-1.00--------------
..............................................................................................................................................................................................................................................................................................................................................................TTGAAGATGTAATGGTGGTTGC.......................................................................................2213.003.00-----------------------1.00-------1.00----------------------------------------1.00---------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGACAATTCCCTGGT..............1922.502.50-1.00--0.500.50------0.50---------------------------------------------------------------------------
............................TGGTCGGGATGACTTGGCATT..........................................................................................................................................................................................................................................................................................................................................................................................................................2112.002.00----------1.00-1.00---------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................TTTGAAGATGTAATGGTGGT..........................................................................................2012.002.00--------------2.00-------------------------------------------------------------------------
................................CGGGATGACTTGGCATT..........................................................................................................................................................................................................................................................................................................................................................................................................................1722.002.00--------------------------------2.00-------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................TTAACCCATTATGTTTTCAGAA................................................2212.004.00--2.00-------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTAACCCATTATGTTTTCAGAA................................................262.000.00-1.001.00-------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TTGAAGATGTAATGGTGGTTG........................................................................................2112.002.00----1.00----------------------1.00------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................TTTGAAGATGTAATGGTGGTTG........................................................................................2212.002.00-------------------------------1.00-------------------------------------1.00------------------
....................................................................................................................................................................................................................................................................................................................................................................................................TTTAACCCATTATGTTTTCAGA.................................................222.000.00-----------1.00-------------------------------------------------------1.00--------------------
............................TGGTCGGGATGACTTGGCA............................................................................................................................................................................................................................................................................................................................................................................................................................1921.501.500.50----0.50--------------0.50-------------------------------------------------------------------
....GGTCATGATTGCAGCCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00---------------------------------------1.00------------------------------------------------
.....................TAGACTATGGTCGGGATGACTTGGCAT...........................................................................................................................................................................................................................................................................................................................................................................................................................2711.001.00---------------------1.00------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................AGAAACTCATTAGACCATTTTT........................................................................................................................2211.001.00----------1.00-----------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TTGAAGATGTAATGGTGGTTGCTAAT...................................................................................261.000.00-----------------------------------------------1.00----------------------------------------
..............................................................................................................................................................................................................AGGATGCTTGGCTAGCCAC..........................................................................................................................................................................................................................................191.000.00------------------------------------1.00---------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................GGTGGTTGCTCAAGTCGT..............................................................................1811.001.00-----1.00----------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................TTTGAAGATGTAATGGTGGTTTCT......................................................................................241.000.00----------------------------------------------------------------1.00-----------------------
............................................................................................................................................................................................................................................................................AAATAAATAAAATACCTCAG...........................................................................................................................................................................201.000.00--------------1.00-------------------------------------------------------------------------
...........................ATGGTCGGGATGACTTGGCATTGT........................................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00----1.00-----------------------------------------------------------------------------------
.....................TAGACTATGGTCGGGATGACTTGGCA............................................................................................................................................................................................................................................................................................................................................................................................................................2621.001.00--------0.500.50------------------------------------------------------------------------------
.............................GGTCGGGATGACTTGTGG............................................................................................................................................................................................................................................................................................................................................................................................................................1841.000.25----0.25-----0.50--0.25--------------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TTGAAGATGTAATGGTGGTTGG.......................................................................................2211.002.00-----------------------1.00----------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................TTTGAAGATGTAATGGTGTTGC........................................................................................221.000.00-----------------------------------------------------1.00----------------------------------
...................................................................................................................................................................................................................................................................................................................................................................GATGTAATGGTGGTTGCTT.....................................................................................191.000.00----------------------------------------------------------1.00-----------------------------
....................................................................................................................................................................................................................................................................................................................................................................ATGTAATGGTGGTTGC.......................................................................................1611.001.00---------------------------------------------------------------------------1.00------------
.........................CTATGGTCGGGATGACTTGGCATTGTTT......................................................................................................................................................................................................................................................................................................................................................................................................................281.000.00--------1.00-------------------------------------------------------------------------------
.........TGATTGCAGCCCTAGACTATGGTCGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................271.000.00--------1.00-------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................TTTGAAGATGTAATGGTGGTTGCTT.....................................................................................2511.006.001.00---------------------------------------------------------------------------------------
...........................ATGGTCGGGATGACTTGGCATTGTTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................2711.001.00--------1.00-------------------------------------------------------------------------------
..............................................................................................................AGTAGTTAAGGTTTGCTGT..........................................................................................................................................................................................................................................................................................................................................1911.001.00-----------------------------1.00----------------------------------------------------------
.........................................................................TTTACTCTGTATTTGAA.................................................................................................................................................................................................................................................................................................................................................................................171.000.00-------------------------------------1.00--------------------------------------------------
........................ACTATGGTCGGGATGACTTGGCAT...........................................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00------------------1.00---------------------------------------------------------------------
......................................................................................................................................................................................................................................................................CAAATTAAATAAATAAGAGG.................................................................................................................................................................................201.000.00-------------------------------------------1.00--------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................TTTGAAGATGTAATGGTGG...........................................................................................1911.001.00--------------1.00-------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................TTTGAAGATGTAATGGTGGGTGC.......................................................................................2311.001.00-------------------------------------------------1.00--------------------------------------
................................CGGGATGACTTGGCATTTT........................................................................................................................................................................................................................................................................................................................................................................................................................1921.002.00----------------------1.00-----------------------------------------------------------------
.....GTCATGATTGCAGCCTGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00----------------------------------------1.00-----------------------------------------------
..............GCAGCCCTAGACTATGGTCGGGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00-------------1.00--------------------------------------------------------------------------
...........................ATGGTCGGGATGACTTGGCATTG.........................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00--------------------------------------------------------1.00-------------------------------
..........................................................................................................................................................................................................TGGCAGGATGCTTGGCTGA..............................................................................................................................................................................................................................................191.000.00--------------------------------------------1.00-------------------------------------------
..........................TATGGTCGGGATGACTTGGCATTA.........................................................................................................................................................................................................................................................................................................................................................................................................................241.000.00-------------------1.00--------------------------------------------------------------------
............................TGGTCGGGATGACTTGGCAT...........................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00------------1.00---------------------------------------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................TTAACCCATTATGTTTTCAGTTA...............................................2311.008.00--1.00-------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTAACCCATTATGT........................................................1811.001.00--------------------------1.00-------------------------------------------------------------
......................AGACTATGGTCGGGATGACTTGGCATTG.........................................................................................................................................................................................................................................................................................................................................................................................................................2811.001.00---------------------------------------------------1.00------------------------------------
........................ACTATGGTCGGGATGACTTGGCATTG.........................................................................................................................................................................................................................................................................................................................................................................................................................2611.001.00------------------1.00---------------------------------------------------------------------
...................CCTAGACTATGGTCGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................1711.001.00----------------------------------------------------------------------1.00-----------------
......................AGACTATGGTCGGGATGACTTGGCATTGT........................................................................................................................................................................................................................................................................................................................................................................................................................2911.001.00--------1.00-------------------------------------------------------------------------------
.....................TAGACTATGGTCGGGATGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................2021.001.000.50----------------------------------------------------------------------------0.50----------
.....................................................................................................................................................................................................................................................................................................................................................................................................TTAACCCATTATGTTTTCCGC.................................................211.000.00---1.00------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGTCTTCAGGAATT.................................1821.001.001.00---------------------------------------------------------------------------------------
.......CATGATTGCAGCCCTAGACT................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00----1.00-----------------------------------------------------------------------------------
................................................................................................................................................................................AAGTACGAGACTAGCCTGT........................................................................................................................................................................................................................................................................1911.001.00--------------------1.00-------------------------------------------------------------------
.............................GGTCGGGATGACTTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................1641.000.25----------0.50--0.50--------------------------------------------------------------------------
...AGGTCATGATTGCAGCCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00----------1.00-----------------------------------------------------------------------------
......................AGACTATGGTCGGGATGACTTGGCA............................................................................................................................................................................................................................................................................................................................................................................................................................2521.001.000.50---------------------------------------0.50-----------------------------------------------
....................................................................................................................TAAGGTTTGCTGTGGATT.....................................................................................................................................................................................................................................................................................................................................181.000.00-----------------------------------------1.00----------------------------------------------
.....................TAGACTATGGTCGGGATGT...................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00----------------------------------------------------1.00-----------------------------------
...........................................................................................................................................................................................................................................................................................................................................................ATTTTGAAGATGTAATGGTGGTT.........................................................................................2311.001.00------1.00---------------------------------------------------------------------------------
.........................................................................................................................TTTGCTGTGGGGCATAGGA...............................................................................................................................................................................................................................................................................................................................191.000.00---------------------------------------------1.00------------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................TTAACCCATTATGTTTTCAGAAA...............................................2311.004.00----------------------------1.00-----------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................GTTTAACCCATTATGTTTTCAGA.................................................231.000.00---------------------------------------------------------1.00------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAATTCCCTGGTAGTCACAGAGT...2620.500.50---------------------------------------0.50------------------------------------------------
................................CGGGATGACTTGGCATTA.........................................................................................................................................................................................................................................................................................................................................................................................................................1820.502.00--------------------------------------------------------------------------0.50-------------
...........................ATGGTCGGGATGACTT................................................................................................................................................................................................................................................................................................................................................................................................................................1620.500.50-------------------------------------------------------------------------------0.50--------
...................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATTAAGAAGACAATTCCCTGGTAG............2820.500.50------------------0.50---------------------------------------------------------------------
................................CGGGATGACTTGGCATTG.........................................................................................................................................................................................................................................................................................................................................................................................................................1820.500.50------------------------------------------0.50---------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAATTAAGAAGACAA.......................1820.500.50--------------------------------------------------------------------------0.50-------------
........................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGTCTTCAGGAATTAAGAAG...........................2420.500.50--0.50-------------------------------------------------------------------------------------
......................AGACTATGGTCGGGATGACTT................................................................................................................................................................................................................................................................................................................................................................................................................................2120.500.50------0.50---------------------------------------------------------------------------------
..........................TATGGTCGGGATGACTTGGCA............................................................................................................................................................................................................................................................................................................................................................................................................................2120.500.50-----------0.50----------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTCCCTGGTAGTCACAGAGTT..2420.500.50-----------------------------------------0.50----------------------------------------------
.............................GGTCGGGATGACTTGGCAT...........................................................................................................................................................................................................................................................................................................................................................................................................................1920.500.500.50---------------------------------------------------------------------------------------
.........................CTATGGTCGGGATGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................1620.500.50----------------------------------------------------------------------------0.50-----------
............................TGGTCGGGATGACTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................1620.500.50----------0.50-----------------------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTCCCTGGTAGTCAC........1820.500.50------------------------------------------------------------------------------0.50---------
.....................TAGACTATGGTCGGGATGACT.................................................................................................................................................................................................................................................................................................................................................................................................................................2120.500.50----------------------------------------0.50-----------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCCTGGTAGTCACAGA.....1920.500.50--------------0.50-------------------------------------------------------------------------
.............................GGTCGGGATGACTTGTGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................1940.500.25-----0.25--------------0.25-------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAATTCCCTGGTAGTCACAGA.....2420.500.50-----------------------0.50----------------------------------------------------------------
.........................................................................................................................................................................................................................................................AGCATCATGAACACAAATT...............................................................................................................................................................................................1920.500.500.50---------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGACAATTCCCTGGTAGTCAC........2520.500.50------------0.50---------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAATTAAGAAGACAAT......................1830.330.33----------------------------------------------------------------------------------0.33-----
.............................GGTCGGGATGACTTGGCA............................................................................................................................................................................................................................................................................................................................................................................................................................1830.330.33----------0.33-----------------------------------------------------------------------------
.............................GGTCGGGATGACTTGTTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................1940.250.25--------------------0.25-------------------------------------------------------------------
.............................GGTCGGGATGACTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................1540.250.25-------------0.25--------------------------------------------------------------------------
.............................GGTCGGGATGACTTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................1740.250.25-------------0.25--------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGGAATTAAGAAGA..........................1740.250.25-----------------------------------------------------------------------------------0.25----
...AGGTCATGATTGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................15100.200.20--------------------------------------------------------------------------------------0.100.10

Antisense strand
AGCAGGTCATGATTGCAGCCCTAGACTATGGTCGGGATGACTTGGCATTGGTAAGTACTTAAATTAACTGTATTTTACTCTGTATTTGTTTTATGAGTTATAAATTAGGAAGTAGTTAAGGTTTGCTGTGGGGCATGTACTGAGTGCTTTCTGTAGCAAGTCTTGAATGCTTTTCTAAGTACGAGACTAGCCTGTAACTCAGTGGCAGGATGCTTGGCTAGCTTGTACAAGGTTCTGGATTTACTCTCTAGCATCATGAACACAAATTAAATAAATAAAATACCCATACCAATAAAATGTTAAGTGAAACTCTCATTAGAAACTCATTAGACCATTTTTAATGGATTATTTTGAAGATGTAATGGTGGTTGCTCAAGTCGTTATTTTGTTTAACCCATTATGTTTTCAGTTTTGTCTTCAGGAATTAAGAAGACAATTCCCTGGTAGTCACAGAGTTAA
...............................................................................................................................................................................................................................................................................................................................................................(((((((((((((..(((((..((((.......))))..))))))))))))))))))...................................................
........................................................................................................................................................................................................................................................................................................................................................345.............................................................409................................................
SizePerfect hitTotal NormPerfect NormSRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		mjLiverWT1()
Liver Data. (liver)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)		SRR206940(GSM723281)
other. (brain)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR073954(GSM629280)
total RNA. (blood)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR037904(GSM510440)
brain_rep1. (brain)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR014231(GSM319955)
16.5 dpc total. (testes)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR037906(GSM510442)
brain_rep3. (brain)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR206942(GSM723283)
other. (brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR023848(GSM307157)
mEFsmallrna_rep1. (cell line)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)		SRR553586(SRX182792)
source: Testis. (testes)
................................................................................................................................................................................................................................................................................................................................AACTCATTAGACCATTGAAC....................................................................................................................... 202.330.00----------------------------------2.00---------------------------------------------0.33-------
................AGCCCTAGACTATGGTCTA........................................................................................................................................................................................................................................................................................................................................................................................................................................ 191.000.00-------------------------------------1.00--------------------------------------------------
...........ATTGCAGCCCTAGACTTAA............................................................................................................................................................................................................................................................................................................................................................................................................................................. 191.000.00-------------------1.00--------------------------------------------------------------------
..................................GGATGACTTGGCATTAAC....................................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00--------------------------1.00-------------------------------------------------------------
........................................................................................................................................................................................................AGTGGCAGGATGCTTGCC................................................................................................................................................................................................................................................. 181.000.00------------------------------------1.00---------------------------------------------------
....................................................AAGTACTTAAATTAACGGT.................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00--------------------------------------------------------------------1.00-------------------
...............................................................................................................................................................................................................................................................................................................................AAACTCATTAGACCATTA.......................................................................................................................... 181.000.00---------------------------1.00------------------------------------------------------------
................................................TGGTAAGTACTTAAAGTT......................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00-------------------------------------------------------------1.00--------------------------
................................................................................................................................................................................................................................................................................................................................AACTCATTAGACCATGA.......................................................................................................................... 170.830.00------------------------0.83---------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................AACTCATTAGACCATT........................................................................................................................... 1630.670.67------------------------0.67---------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................AACTCATTAGACCATTGA......................................................................................................................... 180.670.00------------------------0.33--------------------------------------------------------0.33------
................................................................................................................................................................................................................................................................................................................................AACTCATTAGACCATTG.......................................................................................................................... 170.330.00------------------------0.33---------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................AACTCATTAGACCATGAAC........................................................................................................................ 190.330.000.17-----------------------------------------------------------------------------------0.17---
................................................................................................................................................................................................................................................................................................................................AACTCATTAGACCATTGAA........................................................................................................................ 190.330.00-------------------------------------------0.33--------------------------------------------
................................................................................................................................................................................................................................................................................................................................AACTCATTAGACCATGAA......................................................................................................................... 180.170.00------------------------0.17---------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................AACTCATTAGACCATG........................................................................................................................... 160.170.00-------------------------------------------------------------------------------------0.17--
................................................................................................................................................................................................................................................................................................................................AACTCATTAGACCAT............................................................................................................................ 1560.170.17------------------------0.17---------------------------------------------------------------