ID: uc007rrc.5
GENE: Rad17(5)
chr13:101397751-101398000-


(8)
AGO2.ip 		(5)
B-CELL 		(11)
BRAIN 		(1)
CELL-LINE 		(1)
DCR.mut 		(7)
EMBRYO 		(6)
ESC 		(1)
FIBROBLAST 		(2)
LIVER 		(1)
LYMPH 		(7)
OTHER 		(1)
OTHER.mut 		(1)
PIWI.ip 		(2)
SPLEEN 		(5)
TESTES 		(3)
TOTAL-RNA

Sense strand
AAAAGACATAATCCAAAAATCAGAATTCTGAATTTTGTCCTTAGTAGTAGTGTAGTCAAGCTCACTTGTTTTGATGTTTTGGTTTTTAATTTTTAATAGCTTCCTTATTATTTTGACATTAATATAACTAAAGTATTGAAAATGAGCATATGAAAGCGCTGTGATTATAAAGATTAGTAATCGCAGATATTCTTTCATAGGAGCGCCTTTAACAGAGTTAGACTCACCTCGCCTGCCTGCTCACTTGTCA
....................................................................................................................................................((((((((..((((((((((........)))))))))).....))))))))...................................................
..............................................................................................................................................143......................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR073955(GSM629281)
total RNA. (blood)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR073954(GSM629280)
total RNA. (blood)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR060845(GSM561991)
total RNA. (brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR037911(GSM510448)
newborn_rep4. (total RNA)		SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR306538(GSM750581)
19-24nt. (ago2 brain)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
...................................................................................................................................................ATATGAAAGCGCTGTGATTAT..................................................................................21117.0017.004.002.00-1.003.00--1.00-1.00--1.00-------1.00-1.00-------1.00---------------1.00----
....................................................................................................................................................TATGAAAGCGCTGTGATTA...................................................................................1918.008.00-1.00-4.00---3.00-------------------------------------------
...................................................................................................................................................ATATGAAAGCGCTGTGATT....................................................................................1917.007.00--2.00---1.00------1.00-----------1.00-------------------1.00----1.00
..................................................................................................................................................CATATGAAAGCGCTGTGATTA...................................................................................2115.005.00----1.00--------1.002.00----------------------------------1.00-
...................................................................................................................................................................................ATCGCAGATATTCTTTCATAGA.................................................224.000.00-------------------2.00--------------1.00---1.00------------
...................................................................................................................................................ATATGAAAGCGCTGTGATTA...................................................................................2014.004.00---------1.001.00-------1.00------------------------1.00-------
..................................................................................................................................................CATATGAAAGCGCTGTGATTAT..................................................................................2214.004.00--------4.00------------------------------------------
.................................................................................................................................................................................TAATCGCAGATATTCTTTCATAG..................................................2313.003.00-----------3.00---------------------------------------
..................................................................................................................................................................................AATCGCAGATATTCTTTCATAGT.................................................233.000.00-----3.00---------------------------------------------
..................................................................................................................................................................................AATCGCAGATATTCTTTCATAGA.................................................232.000.00---------------2.00-----------------------------------
..................................................................................................................................................CATATGAAAGCGCTGTGATT....................................................................................2012.002.00------1.00-----------------------------1.00--------------
...................................................................................................................................................................................ATCGCAGATATTCTTTCATAGT.................................................222.000.00---------------------------------------1.00-------1.00---
...................................................................................................................................................ATATGAAAGCGCTGTGATAT...................................................................................202.000.00---------1.00---------------------1.00-------------------
...................................................................................................................................................................................ATCGCAGATATTCTTTCATAGTT................................................232.000.00-1.00-----------1.00-------------------------------------
....................................................................................................................................................TATGAAAGCGCTGTGATTAT..................................................................................2012.002.00-1.00--------------------------------------1.00----------
...................................................................................................................................................................................ATCGCAGATATTCTTTCATAGTTT...............................................242.000.002.00--------------------------------------------------
...................................................................................................................................................ATATGAAAGCGCTGTGATA....................................................................................192.000.00--1.00------------------------------1.00-----------------
...................................................................................................................................................................................ATCGCAGATATTCTTTCATAGATA...............................................241.000.00------1.00--------------------------------------------
.....................................................................................................................................................ATGAAAGCGCTGTGATTATAAAGA.............................................................................2411.001.00------------------------------------------1.00--------
...................................................................................................................................................ATATGAAAGCGCTGTGATC....................................................................................191.000.00--1.00------------------------------------------------
.......................................................................................................................................................................................................................AGTTAGACTCACCTCGCC.................1811.001.00--------------------------------1.00------------------
..................................................................................................................................................CATATGAAAGCGCTGTGATTAA..................................................................................2211.005.00--------------------1.00------------------------------
..................................................................................................................................................................................AATCGCAGATATTCTTTCATAGTT................................................241.000.00-----1.00---------------------------------------------
.................................................................................................................................................................................TAATCGCAGATATTCTTTCATAGT.................................................2411.003.00------------1.00--------------------------------------
...................................................................................................................................................ATATGAAAGCGCTGTGATG....................................................................................191.000.00--1.00------------------------------------------------
.............................................................................................................................................................................TTAGTAATCGCAGATATTCTTTC......................................................2311.001.00----------------1.00----------------------------------
.........................................................................................................................................................................................................................TTAGACTCACCTCGCCTGCCTGC..........2311.001.00------------------1.00--------------------------------
.............................................................................................................................................................................TTAGTAATCGCAGATCA............................................................171.000.00-----------------------1.00---------------------------
...................................................................................................................................................ATATGAAAGCGCTGTGAGT....................................................................................191.000.00--1.00------------------------------------------------
.............................................................................................................................................................................TTAGTAATCGCAGATCAGC..........................................................191.000.00----------1.00----------------------------------------
...................................................................................................................................................ATATGAAAGCGCTGTGATTAA..................................................................................2111.004.00---------------------1.00-----------------------------
.....................................................................................................................................................ATGAAAGCGCTGTGATTAT..................................................................................1911.001.00----------------1.00----------------------------------
...........................................................................................................................ATAACTAAAGTATTGAAAATGAGCAT.....................................................................................................2611.001.00----------1.00----------------------------------------
....................................................................TTTTGATGTTTTGGTCG.....................................................................................................................................................................171.000.00------------1.00--------------------------------------
.................................................................................................................................AAAGTATTGAAAATGAGCATA....................................................................................................2111.001.00--------------------------1.00------------------------
...................................................................................................................................................ATATGAAAGCGCTGTGATTATA.................................................................................2211.001.00-----------------------------------------1.00---------
...................................................................................................................................................................................ATCGCAGATATTCTTTCATAGAT................................................231.000.00---1.00-----------------------------------------------
...............................................................................................................................................................................................................................TCACCTCGCCTGCCTGCTCACTTGTC.2611.001.00-----------------1.00---------------------------------
...................................................................................................................................................ATATGAAAGCGCTGTGATTT...................................................................................2011.007.00------1.00--------------------------------------------
........................................................................................................................................TGAAAATGAGCATATGAAAGCGCTGTGATTATAAAGATTAGTAATCGCAGATATTCTTTCATAG..................................................6411.001.00-----------------------------------1.00---------------
..............................................................................................................................................................................TAGTAATCGCAGATATTCTTTCATAG..................................................2611.001.00------------------------------------------------1.00--
...............................................................................................................................................................................................................................TCACCTCGCCTGCCTGCTCACTTG...2411.001.00-----------------1.00---------------------------------
.............................................................................................................................................................................TTAGTAATCGCAGATATTCTTT.......................................................2211.001.00--------------------------------------------1.00------
.................................................................................................................................................................................TAATCGCAGATATTCTT........................................................1711.001.001.00--------------------------------------------------
...............................................................................................................................................................................AGTAATCGCAGAT..............................................................13100.200.20---------------------0.20-----------------------------

Antisense strand
AAAAGACATAATCCAAAAATCAGAATTCTGAATTTTGTCCTTAGTAGTAGTGTAGTCAAGCTCACTTGTTTTGATGTTTTGGTTTTTAATTTTTAATAGCTTCCTTATTATTTTGACATTAATATAACTAAAGTATTGAAAATGAGCATATGAAAGCGCTGTGATTATAAAGATTAGTAATCGCAGATATTCTTTCATAGGAGCGCCTTTAACAGAGTTAGACTCACCTCGCCTGCCTGCTCACTTGTCA
....................................................................................................................................................((((((((..((((((((((........)))))))))).....))))))))...................................................
..............................................................................................................................................143......................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR073955(GSM629281)
total RNA. (blood)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR073954(GSM629280)
total RNA. (blood)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR060845(GSM561991)
total RNA. (brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR037911(GSM510448)
newborn_rep4. (total RNA)		SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR306538(GSM750581)
19-24nt. (ago2 brain)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
..............................................................................................AATAGCTTCCTTATTATATA........................................................................................................................................ 201.000.00-1.00-------------------------------------------------
......................................................................................................................................................................................................................................GCCTGCCTGCTCACTCTC.. 181.000.00-------------------------------------1.00-------------
.....................................................AGTCAAGCTCACTTGTGT................................................................................................................................................................................... 181.000.00----------------------------1.00----------------------
......................................................................................................................................................................................................................................GCCTGCCTGCTCACTTCTC. 191.000.00---------------------------1.00-----------------------
......................................................................................................................................................................................................................................GCCTGCCTGCTCACTTGCTCG 211.000.00--------------1.00------------------------------------
................................................................................................TAGCTTCCTTATTATTTA........................................................................................................................................ 181.000.00------------------------1.00--------------------------
.............................................................TCACTTGTTTTGATGTTAAGA........................................................................................................................................................................ 211.000.00-----------------------------1.00---------------------