ID: uc007qrr.3
GENE: Tmed9(3)
chr13:55698002-55698251+


(2)
AGO1.ip 		(10)
AGO2.ip 		(2)
B-CELL 		(18)
BRAIN 		(3)
CELL-LINE 		(1)
DCR.mut 		(1)
DGCR8.mut 		(10)
EMBRYO 		(7)
ESC 		(3)
FIBROBLAST 		(2)
LIVER 		(1)
LYMPH 		(6)
OTHER 		(3)
OTHER.mut 		(2)
PIWI.ip 		(2)
SKIN 		(3)
SPLEEN 		(11)
TESTES

Sense strand
TCTGACAAATGGACAGACAGACTTAGGAGAAATGCCTTAGTCTGCCAGCAGTCATTCGACTGCTACTGATGAAGATAGTCCCCACAGGCATCTGGCCACACTTTGGGCAGAGTGGGTGGCCCTGGGGATCTTTGCAAGCTGGGAACACAGCGGTTCCAGCAGTCTTAGACTACTAAGCCTTGCCGCTTATTTCCCAACAGTGGCGAGAAGAGCGCTTCAGACAAACCAGCGAAAGCACCAACCAGCGAGT
...........................................................................................................................................((((((...((((((......((.(((((....))))).)).))))))...))))))......................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		mjTestesWT4()
Testes Data. (testes)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR394083(GSM855969)
background strain: C57BL6/SV129cell type: KRa. (cell line)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR206939(GSM723280)
other. (brain)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		GSM475281(GSM475281)
total RNA. (testes)		SRR206940(GSM723281)
other. (brain)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR306538(GSM750581)
19-24nt. (ago2 brain)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR553586(SRX182792)
source: Testis. (testes)		SRR037930(GSM510468)
e7p5_rep4. (embryo)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR525240(SRA056111/SRX170316)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR059770(GSM562832)
Treg_Dicer. (spleen)
..................................................................................................................................................................................CTTGCCGCTTATTTCCCAACAGT.................................................23138.0038.001.005.002.003.00---2.003.00--1.00---2.002.00-2.001.002.00-1.002.002.00--2.00------1.00----1.001.00------------------1.00-------1.00
..................................................................................................................................................................................CTTGCCGCTTATTTCCCAACAGA.................................................23116.005.006.002.00-1.00---------1.00--------1.00---------1.00-----1.00------------1.00------1.00-1.00-------
........................................................................................................................................AGCTGGGAACACAGCGGTTCCAG...........................................................................................2318.008.001.00-2.00--2.00-----------1.00-------1.00---------------------------------------1.00--
....................................................................................................................................................................................TGCCGCTTATTTCCCAACAGA.................................................216.000.00-1.001.002.00--------1.00---------------------1.00---------------------------------
........................................................................................................................................AGCTGGGAACACAGCGGTTCCAT...........................................................................................2316.005.00---------1.004.00----------------------------------1.00----------------------
.................................................................................................................GGGTGGCCCTGGGGATCTTTGCAAGC...............................................................................................................2616.006.00------6.00-------------------------------------------------------------
..................................................................................................................................................................................CTTGCCGCTTATTTCCCAACAG..................................................2215.005.001.00------1.00---------1.00-----------------------------1.00----------------1.00---
........................................................................................................................................AGCTGGGAACACAGCGGTTCCA............................................................................................2215.005.00-----------1.00---1.00---2.00-----------------------1.00------------------------
..................................................................................................................................................................................CTTGCCGCTTATTTCCCAACA...................................................2115.005.00-1.00---1.00--------------------------1.00---------------1.00-1.00-----------------
..........................................................................................................................................CTGGGAACACAGCGGTTCCAG...........................................................................................2114.004.00--------1.00----2.00-----------------------------------1.00------------------
.......................................................................................................................................AAGCTGGGAACACAGCGGTTCCAGC..........................................................................................2513.003.00--2.00--------------------------1.00--------------------------------------
........................................................................................................................................AGCTGGGAACACAGCGGTTCC.............................................................................................2113.003.00--------------3.00-----------------------------------------------------
..........................................................................................................................................CTGGGAACACAGCGGTTCCAGCA.........................................................................................2313.003.00----------------------------1.00-2.00-------------------------------------
...........................................................CTGCTACTGATGAAGGCT.............................................................................................................................................................................183.000.00----3.00---------------------------------------------------------------
..TGACAAATGGACAGACAGACTTAGGA..............................................................................................................................................................................................................................2612.002.00-----------------------------------------1.00--------------1.00-----------
......................................................................................................................................................................................CCGCTTATTTCCCAACAG..................................................1812.002.00---------------------------------2.00----------------------------------
........................................................................................................................................AGCTGGGAACACAGCGGTTCCAGA..........................................................................................2412.008.00--------------------------2.00-----------------------------------------
..................................................................................................................................................................................CTTGCCGCTTATTTCCCAACT...................................................2112.002.00-----2.00--------------------------------------------------------------
......................................................................................................................................................................................................................CTTCAGACAAACCAGCGAAA................2012.002.00-----------------------------------2.00--------------------------------
.................................................................................................................................................................................CCTTGCCGCTTATTTCCCAACAGT.................................................2412.002.00--------------------1.00--------------------------------1.00--------------
...................................................................................................................................................................................TTGCCGCTTATTTCCCAACAGA.................................................2212.001.00------------------------------------------1.00------------1.00------------
...........................................................CTGCTACTGATGAAGGCTT............................................................................................................................................................................192.000.00----2.00---------------------------------------------------------------
..................................................................................................................................................................................CTTGCCGCTTATTTCCCAAC....................................................2012.002.00-------1.00----------1.00-------------------------------------------------
................ACAGACTTAGGAGAACCC........................................................................................................................................................................................................................181.000.00---------1.00----------------------------------------------------------
.................................................................................................................................................................................CCTTGCCGCTTATTTCCCAAC....................................................2111.001.00--------1.00-----------------------------------------------------------
..................................................................................................................................................................................CTTGCCGCTTATTTCCCAACCGT.................................................2311.002.00------------------------------------------------------1.00-------------
.................................................................................................................................................................................CCTTGCCGCTTATTTCCCAACAG..................................................2311.001.00-------1.00------------------------------------------------------------
...........................................................................................................................................................................................................CGAGAAGAGCGCTTCAGACAAACCAGCGAAAGCACCA..........3711.001.00-------------------------------------------------------------1.00------
..........................................................................................................................................CTGGGAACACAGCGGTTCCAGC..........................................................................................2211.001.00--1.00-----------------------------------------------------------------
.................................................................................................................................................................................CCTTGCCGCTTATTTCCCAACA...................................................2211.001.00-------------------------------1.00------------------------------------
..................................................................................................................................................................................CTTGCCGCTTATTTCCCAACAT..................................................2211.005.00---1.00----------------------------------------------------------------
........................................................................................................................................AGCTGGGAACACAGCGGTTCCAGT..........................................................................................2411.008.00-----------------------------1.00--------------------------------------
...............................................................................................................................ATCTTTGCAAGCTGGGAACACAGCGGTTCCAGCAGTCTTAGACTACTAAGCCTTGCCGCTTATTTCCCAACA...................................................7211.001.00--------------------------------------------1.00-----------------------
........................................................................................................................................AGCTGGGAACACAGCGGTTCCAA...........................................................................................2311.005.00-----------------1.00--------------------------------------------------
........................................................................................................................................AGCTGGGAACACAGCGGTTCCAGTA.........................................................................................2511.008.00------------1.00-------------------------------------------------------
...........................................................................................................................................................................................................CGAGAAGAGCGCTTCAGACAAACCAGC....................2711.001.00------------------------------------------------------------------1.00-
..........................................................................................................................................CTGGGAACACAGCGGTTCCCGCA.........................................................................................231.000.00----------------------------1.00---------------------------------------
........................................................................................................................................AGCTGGGAACACAGCGGTT...............................................................................................1911.001.00-------------------------------1.00------------------------------------
........................................................................................................................................AGCTGGGAACACAGCGGTTCAAG...........................................................................................231.000.00-----1.00--------------------------------------------------------------
................ACAGACTTAGGAGAACAC........................................................................................................................................................................................................................181.000.00---------1.00----------------------------------------------------------
...............GACAGACTTAGGAGAAAAGCT......................................................................................................................................................................................................................211.000.00----------------1.00---------------------------------------------------
.......................................................................................................................................AAGCTGGGAACACAGCGGTTCC.............................................................................................2211.001.00--------------------------------------------------------------1.00-----
...................................................................................................................................................................................TTGCCGCTTATTTCCCAACAG..................................................2111.001.00---------------------------------------------------------------1.00----
..................................................................................................................................................................................CTTGCCGCTTATTTCCCAACGGT.................................................2311.002.00-----------1.00--------------------------------------------------------
......................................................................................................................................................................................................................CTTCAGACAAACCAGCGAAAGCACTAAC........281.000.00----------------------------------------------1.00---------------------
.......................................................................................................................................................GGTTCCAGCAGTCTTAGACTA..............................................................................2111.001.00------------1.00-------------------------------------------------------
............................................................................................................................................................................................................GAGAAGAGCGCTTCAGAC............................1820.500.50-----------0.50--------------------------------------------------------
......AAATGGACAGACAGACTT..................................................................................................................................................................................................................................1830.330.330.33-------------------------------------------------------------------

Antisense strand
TCTGACAAATGGACAGACAGACTTAGGAGAAATGCCTTAGTCTGCCAGCAGTCATTCGACTGCTACTGATGAAGATAGTCCCCACAGGCATCTGGCCACACTTTGGGCAGAGTGGGTGGCCCTGGGGATCTTTGCAAGCTGGGAACACAGCGGTTCCAGCAGTCTTAGACTACTAAGCCTTGCCGCTTATTTCCCAACAGTGGCGAGAAGAGCGCTTCAGACAAACCAGCGAAAGCACCAACCAGCGAGT
...........................................................................................................................................((((((...((((((......((.(((((....))))).)).))))))...))))))......................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		mjTestesWT4()
Testes Data. (testes)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR394083(GSM855969)
background strain: C57BL6/SV129cell type: KRa. (cell line)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR206939(GSM723280)
other. (brain)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		GSM475281(GSM475281)
total RNA. (testes)		SRR206940(GSM723281)
other. (brain)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR306538(GSM750581)
19-24nt. (ago2 brain)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR553586(SRX182792)
source: Testis. (testes)		SRR037930(GSM510468)
e7p5_rep4. (embryo)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR525240(SRA056111/SRX170316)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR059770(GSM562832)
Treg_Dicer. (spleen)
.........................................................................................................................CTGGGGATCTTTGCACTGT.............................................................................................................. 191.000.00----------------------------------------------------1.00---------------
.......................................GTCTGCCAGCAGTCAGTG................................................................................................................................................................................................. 181.000.00---------1.00----------------------------------------------------------
.........................................................................................................................CTGGGGATCTTTGCATCCT.............................................................................................................. 191.000.00------------------------------------1.00-------------------------------
..........................................................................................................................................................................................TTATTTCCCAACAGTGAT.............................................. 181.000.00---------------------------------------------------------1.00----------
...........................................................CTGCTACTGATGAAGGCC............................................................................................................................................................................. 181.000.00----1.00---------------------------------------------------------------
......................................................................................................................................................................................................................CTTCAGACAAACCAGCGAAAGCACCA.......... 2611.001.00-------------------------------------1.00------------------------------