ID: uc007mqa.4
GENE: Tet3(4)
chr11:119016481-119016730-


(1)
AGO.mut 		(2)
AGO2.ip 		(13)
BRAIN 		(1)
DGCR8.mut 		(8)
EMBRYO 		(3)
ESC 		(1)
HEART 		(1)
KIDNEY 		(3)
LIVER 		(3)
OTHER 		(5)
OTHER.mut 		(2)
PIWI.ip 		(1)
PIWI.mut 		(11)
TESTES 		(1)
TOTAL-RNA

Sense strand
CACACACCCTCTTGGAAGCTGGAGGGTTGACTGCTCATAGCCCTAGCAACAGAGGTTAGAGCTCCTCAGAGCACAGGCTTCTGTTTCCGGGGTGTGCAGCTATTCCAGGTCCAGTTGGCTGCTGTGTTACTGGCTCCCTGGCACTCAGGGCATCCCCCTTTCATAGCTGACCTCAGGGTTGTGCTCTGTCTGCCTCACAGGCTCTCCATGACTCCAGAGGAGCAGAGAGCCTTCTGGCGTAATGTGCAGT
...........................................................................................................................................((((..((((((((..((((.(((....)))....))))..))))))))..))))........................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormmjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR206942(GSM723283)
other. (brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR206941(GSM723282)
other. (brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR553582(SRX182788)
source: Brain. (Brain)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR038741(GSM527276)
small RNA-Seq. (brain)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR306541(GSM750584)
19-24nt. (ago2 brain)
.................................................................................................................................................................................GTTGTGCTCTGTCTGCCTCACA...................................................2217.007.00---1.00--------2.00---1.00----1.00----------1.00-1.00---------
.................................................................................................................................................................................GTTGTGCTCTGTCTGCCTCAC....................................................2117.007.00----1.00-----1.00--1.00-1.00----1.00--------------1.00-----1.00--
.................................................................................................................................................................................GTTGTGCTCTGTCTGCCTCACAGT.................................................2417.004.006.00-------1.00-----------------------------------
.................................................................................................................................................................................GTTGTGCTCTGTCTGCCTCACAG..................................................2314.004.00--3.00-------1.00---------------------------------
..................................................................................................................................................................................TTGTGCTCTGTCTGCCTCAC....................................................2013.003.00---1.00-------1.00--------------------------1.00-----
........................................................................................................................................CCTGGCACTCAGGGCATCCCCCT...........................................................................................2313.003.00-1.00----1.00------------------------1.00------------
................................................................................................................................................................................................................TGACTCCAGAGGAGCAGAGAGC....................2213.003.00-----2.00-----------1.00--------------------------
........................................................................................................................................CCTGGCACTCAGGGCATCCCCCAT..........................................................................................2412.002.00------------------------1.00------------1.00------
................................................................................................................................................................................................................TGACTCCAGAGGAGCAGAGAGCCTTCTG..............2812.002.00---------1.00-----------------------1.00----------
..................................................................................................................................................................................TTGTGCTCTGTCTGCCTCACAGT.................................................2312.001.00------1.00------1.00------------------------------
.................................................................................................................................................................................GTTGTGCTCTGTCTGCCTCA.....................................................2012.002.00---1.00----1.00-----------------------------------
........................................................................................................................................CCTGGCACTCAGGGCATCCCCC............................................................................................2212.002.00-1.00--------------------------------------1.00---
........................................................................................................................................CCTGGCACTCAGGGCATCCCCCTT..........................................................................................2412.002.00---1.00---------------1.00------------------------
............................................................................................................................................................................................................TCCATGACTCCAGAGGAGCAGAGAGC....................2612.002.00---------1.00--------1.00-------------------------
........................................................................................................................................CCTGGCACTCAGGGCATCCCCT............................................................................................222.000.00-------2.00------------------------------------
.......................................................................................................................................CCCTGGCACTCAGGGCATCCCCC............................................................................................2312.002.00-1.00-------------------------1.00----------------
.............................ACTGCTCATAGCCCTCGCA..........................................................................................................................................................................................................191.000.00----------------------1.00---------------------
.......................................................................................................................................CCCTGGCACTCAGGGCATCCCC.............................................................................................2211.001.00-------------------------1.00------------------
........................................................................................................................................CCTGGCACTCAGGGCATCCCCCA...........................................................................................2311.002.00-1.00------------------------------------------
..........................................................................................................................................TGGCACTCAGGGCATCCCCCTT..........................................................................................2211.001.00----1.00---------------------------------------
.................................................................................................................................................................................GTTGTGCTCTGTCTGCCTCACAGTT................................................2511.004.00--------------1.00-----------------------------
........................................................................................................................................CCTGGCACTCAGGGCATCCC..............................................................................................2011.001.00-1.00------------------------------------------
..................................................................................................................................................................................TTGTGCTCTGTCTGCCTCACA...................................................2111.001.00------------------------------1.00-------------
.................................................................................................................................................................................GTTGTGCTCTGTCTGCCTCACG...................................................2211.007.00---------------------------------------1.00----
..................................................................................................................................................................................TTGTGCTCTGTCTGCCTCACAG..................................................2211.001.00--------------1.00-----------------------------
.......................................................................................................................................................................................................................AGAGGAGCAGAGAGCCTTCTGGCGTAATG......2911.001.00----------------------------1.00---------------
....................................................................................................................................................................................................................TCCAGAGGAGCAGAGAAGTT..................201.000.00------------------------------------1.00-------
.......................................................................................................................................CCCTGGCACTCAGGGCATC................................................................................................1911.001.00--1.00-----------------------------------------
.................................................................................................................................................................................GTTGTGCTCTGTCTGCCTCACAGA.................................................2411.004.00-----------1.00--------------------------------
..............................................................................................................................................................................................................CATGACTCCAGAGGAGCAGAGAGACTA.................271.000.00-----------------------1.00--------------------
..........................................................................................................................................................................................................................GGAGCAGAGAGCCTTCTGGCGTAATG......2611.001.00--------------------------1.00-----------------
.................................................................................................................................................................................GTTGTGCTCTGTCTGCCTCT.....................................................201.000.00------------------------------------------1.00-
..................................................................................................................................................................................TTGTGCTCTGTCTGCCTCA.....................................................1920.500.50-------------------------------------------0.50

Antisense strand
CACACACCCTCTTGGAAGCTGGAGGGTTGACTGCTCATAGCCCTAGCAACAGAGGTTAGAGCTCCTCAGAGCACAGGCTTCTGTTTCCGGGGTGTGCAGCTATTCCAGGTCCAGTTGGCTGCTGTGTTACTGGCTCCCTGGCACTCAGGGCATCCCCCTTTCATAGCTGACCTCAGGGTTGTGCTCTGTCTGCCTCACAGGCTCTCCATGACTCCAGAGGAGCAGAGAGCCTTCTGGCGTAATGTGCAGT
...........................................................................................................................................((((..((((((((..((((.(((....)))....))))..))))))))..))))........................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormmjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR206942(GSM723283)
other. (brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR206941(GSM723282)
other. (brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR553582(SRX182788)
source: Brain. (Brain)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR038741(GSM527276)
small RNA-Seq. (brain)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR306541(GSM750584)
19-24nt. (ago2 brain)
...............................................................................................................................................................................................GCCTCACAGGCTCTCGCCT........................................ 191.000.00-----------------------------1.00--------------