ID: uc007lkz.10
GENE: Jup(3)
chr11:100244510-100244758-


(2)
AGO1.ip 		(7)
AGO2.ip 		(2)
AGO3.ip 		(1)
B-CELL 		(22)
BRAIN 		(6)
CELL-LINE 		(3)
DCR.mut 		(1)
DGCR8.mut 		(9)
EMBRYO 		(11)
ESC 		(5)
FIBROBLAST 		(7)
HEART 		(3)
KIDNEY 		(13)
LIVER 		(2)
LUNG 		(1)
LYMPH 		(14)
OTHER 		(8)
OTHER.mut 		(2)
OVARY 		(1)
PANCREAS 		(3)
PIWI.ip 		(6)
SKIN 		(2)
SPLEEN 		(16)
TESTES 		(1)
THYMUS 		(2)
TOTAL-RNA 		(3)
UTERUS

Sense strand
CCACCCGGGCTCTGCCTGAGCTCACCAAGCTGCTCAACGATGAGGACCCGGTCTGTGAAGGGCCTGGAGGTGGGGTGGGATGGAGCTGGCTGTCCTCAGAGGGAGGGGTCATCTAAGGATGCCACGGCCTTTGCCTTCCTTCCCTCTGTGGAGGAGGAGCCTGAGGCTATCTGCTCAAGGTCTCACACACTTCCTCCAGGTAGTGGTGACCAAGGCGGCTATGATCGTGAACCAGCTGTCCAAGAAGGA
..............................................................................................................................................((.((((((((((((....(((((((..........)))))))....)))))))))..))).))...........................................
.............................................................................................................................................142.............................................................206.........................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		mjLiverKO2()
Liver Data. (Zcchc11 liver)		mjLiverWT1()
Liver Data. (liver)		mjLiverWT2()
Liver Data. (liver)		mjTestesWT4()
Testes Data. (testes)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		mjTestesWT3()
Testes Data. (testes)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR206941(GSM723282)
other. (brain)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR553582(SRX182788)
source: Brain. (Brain)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR206940(GSM723281)
other. (brain)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		mjLiverWT3()
Liver Data. (liver)		GSM314559(GSM314559)
ESC dgcr8 (454). (ESC)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR014234(GSM319958)
Ovary total. (ovary)		SRR095855BC5(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR206942(GSM723283)
other. (brain)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR065049(SRR065049)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR042476(GSM539868)
mouse heart tissue [09-002]. (heart)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		GSM361430(GSM361430)
WholeCerebellum_1month_Ptc+-_Ink4c--_rep2. (brain)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		GSM640582(GSM640582)
small RNA in the liver with paternal control . (liver)		SRR095853(SRX039174)
sequencing of miRNA from wild type and diseas. (heart)		SRR525237(SRA056111/SRX170313)
Mus musculus domesticus miRNA sequencing. (Blood)		SRR038741(GSM527276)
small RNA-Seq. (brain)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR065047(SRR065047)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR014229(GSM319953)
10 dpp MILI. (mili testes)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR095855BC6(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR042481(GSM539873)
mouse pancreatic tissue [09-002]. (pancreas)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR095855BC3(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR065053(SRR065053)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR073955(GSM629281)
total RNA. (blood)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)
..................................................................................................................................................TGTGGAGGAGGAGCCTGAGGCT.................................................................................221138.00138.0018.008.0018.006.0014.008.005.00-5.002.003.00----1.004.00--2.00-2.001.00---2.001.00-2.00-1.00-2.002.00-1.002.00--3.002.00-1.002.002.001.001.001.00-1.00--1.00----1.001.00-----------------1.00-----1.00-----1.00--1.00------1.00-----1.00--1.001.00--1.00-1.00--------1.00---
....................................................................................................................................................................................TCTCACACACTTCCTCCAGTTT...............................................2239.000.002.00--------2.00--4.003.00-1.00-2.003.00-2.00---3.00--1.00--------------2.00--------2.00----2.001.00--1.00----1.00--1.00-----1.00---1.001.00--------------------------1.00-------------1.001.00-----
..................................................................................................................................................TGTGGAGGAGGAGCCTGAGG...................................................................................20117.0017.00-3.00-6.00----1.001.00---3.00--3.00--------------------------------------------------------------------------------------------------------------
..................................................................................................................................................TGTGGAGGAGGAGCCTGAGGC..................................................................................21116.0016.005.00-----1.00-2.001.00--1.001.00--1.00----2.00---------------------2.00-----------------------------------------------------------------------------------
..................................................................................................................................................TGTGGAGGAGGAGCCTGAGGCTA................................................................................23113.0013.001.00-------------------------2.00---2.00--1.00---------------1.00--1.00------1.00---------------------------1.00---1.00----------1.001.00-----------------------
..................................................................................................................................................TGTGGAGGAGGAGCCTGAGGCTT................................................................................23112.00138.00------1.00-1.003.003.00------1.00------------------1.00----------1.00---------------------------------------------1.00---------------------------------
.............................................................................................................................................................................CTCAAGGTCTCACACACTTCCTA.....................................................2311.000.00-----------11.00-------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................TGTGGAGGAGGAGCCTGAGGCTTT...............................................................................24110.00138.002.00--3.00--------------------------------1.00-------------1.00----1.00--------------------------1.00--------------1.00-----------------------------
.........................................................................................................................................................................................................AGTGGTGACCAAGGCGGCT.............................1919.009.00--------------1.00----3.00------------------3.00-------------------------------------1.00---------------------------------------1.00----------
..................................................................................................................................................TGTGGAGGAGGAGCCTGAGGCTAT...............................................................................2419.009.00--------1.00----1.00-1.00------------------1.00----1.00------1.00--------------2.00------------------1.00----------------------------------------------
..................................................................................................................................................TGTGGAGGAGGAGCCTGAGGA..................................................................................2118.0017.00-----5.00---1.00------------2.00--------------------------------------------------------------------------------------------------------
..................................................................................................................................................TGTGGAGGAGGAGCCTGAGGCTAA...............................................................................2417.0013.00------------1.00---------------1.00-------------------1.001.00----------------1.00----------------------------------------------1.00----------1.00--
....................................................................................................................................................................................TCTCACACACTTCCTCCAGTTTT..............................................236.000.00----------------------------------------------------------1.00-1.00--------------1.00--------1.00-----------1.00----------------------1.00-------
...............................................................................................................................CCTTTGCCTTCCTTCCCTCTGTGGAGGAGGAGCCTGAGGCTATCTGCTCAAGGTCTCACACACTTCCTCCAG..................................................7215.005.00-------5.00-----------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................GTAGTGGTGACCAAGGCGGC..............................2015.005.00-5.00-----------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................GTGGAGGAGGAGCCTGAGGC..................................................................................2015.005.00-4.00-------------------1.00---------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................GGTCTCACACACTTCCTCCAGT.................................................224.000.00------------2.00--1.00---------------------------------------------------------------------------------------------------1.00-----------
....................................ACGATGAGGACCCGGTA....................................................................................................................................................................................................174.000.00-----------------------4.00-------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................GGTCTCACACACTTCCTCCAGA.................................................223.000.00------------1.00-2.00----------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TCTCACACACTTCCTCCAGA.................................................203.000.00------------1.00----------------------------------------------------------1.00-------------1.00-----------------------------------------
..................................................................................................................................................TGTGGAGGAGGAGCCTGCGGC..................................................................................213.000.00-------------1.00---1.001.00------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TCTCACACACTTCCTCCAGCTTT..............................................233.000.00------3.00------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TCTCACACACTTCCTCCAGAAT...............................................223.000.00---------------1.00-----------1.00-----------------------------------1.00---------------------------------------------------------------
..................................................................................................................................................TGTGGAGGAGGAGCCTGAGGCAA................................................................................2313.0016.00----------1.00----------1.00-----------------------------------------------1.00---------------------------------------------------------
..................................................................................................................................................TGTGGAGGAGGAGCCTGAGGCTAAAT.............................................................................2612.0013.00------1.00--------------------------------1.00---------------------------------------------------------------------------------------
.............................................................................................................................................................................................................GTGACCAAGGCGGCTATGATCGTGAACCA...............2912.002.00----------1.00---------------------------------------------------------------------------1.00----------------------------------------
..................................................................................................................................................TGTGGAGGAGGAGCCTGAG....................................................................................1912.002.00-------------------------1.00-------------------------------1.00---------------------------------------------------------------------
...................................................................................................................................................................................GTCTCACACACTTCCTCCAG..................................................2012.002.00-----------------------------------2.00-------------------------------------------------------------------------------------------
..................................................................................................................................................TGTGGAGGAGGAGCCTGAGGCTTA...............................................................................2412.00138.00---------1.00-------------------------------------------------------------------------------------1.00-------------------------------
...........................................................................................................................................................................................................................TATGATCGTGAACCAGCTGTCCAA......2412.002.00------------------------------2.00------------------------------------------------------------------------------------------------
....................................................................................................................................................TGGAGGAGGAGCCTGAGGCTATCTGCTCAAGGTCTCACACACTTCCTCCAGA.................................................522.000.00-------2.00-----------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TCTCACACACTTCCTCCCGTT................................................212.000.00-----------------1.001.00------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................GGTGACCAAGGCGGCTATGATCGT.....................2412.002.00--------------2.00----------------------------------------------------------------------------------------------------------------
...................................................................................................................................................GTGGAGGAGGAGCCTGAGGCTATCTGCTCAAGGTCTCACACACTTCCTCCAGA.................................................532.000.00-------2.00-----------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................TGTGGAGGAGGAGCCTGAGGCA.................................................................................2212.0016.00-------------------------------1.00-------1.00---------------------------------------------------------------------------------------
....................................................................................................................................................TGGAGGAGGAGCCTGAGGCT.................................................................................2012.002.00-------------------------------------1.00-------------------------------------------1.00---------------------------------------------
..................................................................................................................................................TGTGGAGGAGGAGCCTGAGGCAT................................................................................2312.0016.002.00------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................AGTGGTGACCAAGGCGGCTAT...........................2112.002.00--------------2.00----------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TCTCACACACTTCCTCCAGATT...............................................222.000.00-------------1.00------------------1.00----------------------------------------------------------------------------------------------
.................................................................................................................................TTTGCCTTCCTTCCCTCTGTGGAGGAGGAGCCTGAGGCTATCTGCTCAAGGTCTCACACACTTCCTCCAG..................................................7012.002.00-------2.00-----------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................TGGAGGAGGAGCCTGAGGC..................................................................................1912.002.00------1.00------------------------------------------------1.00-----------------------------------------------------------------------
................................................................................................................................CTTTGCCTTCCTTCCCTCTGTGGAGGAGGAGCCTGAGGCTATCTGCTCAAGGTCTCACACACTTCCTCCAG..................................................7112.002.00-------2.00-----------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................TGTGGAGGAGGAGCCTGAGGCTTTTT.............................................................................2611.00138.00--------------------1.00----------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................TATGATCGTGAACCAG..............1611.001.00----------1.00--------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TCTCACACACTTCCTCCAATTT...............................................221.000.00-----------------1.00-------------------------------------------------------------------------------------------------------------
...............................GCTCAACGATGAGGACCCGGC.....................................................................................................................................................................................................211.000.00----------------------------------------------------------------1.00--------------------------------------------------------------
...............CTGAGCTCACCAAGCTGC........................................................................................................................................................................................................................1811.001.00------------------------1.00------------------------------------------------------------------------------------------------------
..................................................GTCTGTGAAGGGCCTGGAGGTGGGGT.............................................................................................................................................................................2611.001.00-----------------------------------------------------1.00-------------------------------------------------------------------------
..................................................................................................................................................TGTGGAGGAGGAGCCTGAGGCTTAAA.............................................................................2611.00138.00---------------------------------------------------------------------------------------------------------------------1.00---------
....................................................................................................................................................TGGAGGAGGAGCCTGAGGCTAT...............................................................................2211.001.001.00------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................TGGTGACCAAGGCGGCTATGATC.......................2311.001.00-----------------------------------------------------------------------------------------------------------1.00-------------------
..................................................................................................................................................TGTGGAGGAGGAGCCTGAGGTA.................................................................................2211.0017.00--------1.00----------------------------------------------------------------------------------------------------------------------
.......................................................................GGGGTGGGATGGAGCTGGC...............................................................................................................................................................1911.001.00------------------1.00------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................GTCTCACACACTTCCTCAAG..................................................201.000.00-----------------------------------1.00-------------------------------------------------------------------------------------------
....................................................................................................................................................................................TCTCACACACTTCCTCCAGGA................................................211.000.00------------------------1.00------------------------------------------------------------------------------------------------------
..................................................................................................................................................TGTGGAGGAGGAGCCTGAGGCTATAT.............................................................................2611.009.00------1.00------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................TGTGGAGGAGGAGCCTGAGGCTTAGT.............................................................................2611.00138.00--------------------------------------------------------------------------------------------------1.00----------------------------
.......................................................................GGGGTGGGATGGAGCTGC................................................................................................................................................................181.000.00--------------------1.00----------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TCTCACACACTTCCTCCAGTTA...............................................221.000.00--------1.00----------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................GGTCTCACACACTTCCTCCAGC.................................................221.000.00-----------------1.00-------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TCTCACACACTTCCTCCAGCTT...............................................221.000.00----------------------------------------------------------------------1.00--------------------------------------------------------
.................................................................................................................................................CTGTGGAGGAGGAGCCTGAG....................................................................................2011.001.00----------------------------------------------------------------------------------------------1.00--------------------------------
....................................................................................................................................................................................TCTCACACACTTCCTCCAGTCT...............................................221.000.00---------------1.00---------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TCTCACACACTTCCTCCCGT.................................................201.000.00---------------1.00---------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................TGACCAAGGCGGCTATGATCGTGAACC................2711.001.00------------------------------------------------------------------------1.00------------------------------------------------------
.......................................................TGAAGGGCCTGGAGGTGGA...............................................................................................................................................................................191.000.00---------------------------------------------------------------------------------------------------------------1.00---------------
..................................................................................................................................................................................................................................GTGAACCAGCTGTCCAAGAAGGA2311.001.00------------------------------------------------------1.00------------------------------------------------------------------------
.........................................................................................................................................................................................................................GCTATGATCGTGAACCAGCTGT..........2211.001.00----------------------------1.00--------------------------------------------------------------------------------------------------
..................................................................................................................................................TGTGGAGGAGGAGCCTGAGGCTTTT..............................................................................2511.00138.00------------1.00------------------------------------------------------------------------------------------------------------------
.........................CAAGCTGCTCAACGATGAGGACCCGGTA....................................................................................................................................................................................................281.000.00------------------------------------------1.00------------------------------------------------------------------------------------
....................................................................................................................................................................................................CAGGTAGTGGTGACCAAGGCGGCTCT...........................261.000.00------------------1.00------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................GTAGTGGTGACCAAGGCGGCTATGATCGTGAACC................3411.001.00-------------------------1.00-----------------------------------------------------------------------------------------------------
..........................AAGCTGCTCAACGATGAGGACCCGGT.....................................................................................................................................................................................................2611.001.00-----------------------------------------------------------------------------------------------------1.00-------------------------
..................................................................................................................................................................................................................................GTGAACCAGCTGTCCAAGAAG..2111.001.00----------1.00--------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................TAGTGGTGACCAAGGCGGCTTT...........................221.000.001.00------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................GTAGTGGTGACCAAGGCGGCTATGATCGTGA...................3111.001.00----------1.00--------------------------------------------------------------------------------------------------------------------
................................CTCAACGATGAGGACCCGGTA....................................................................................................................................................................................................211.000.00-------------------------1.00-----------------------------------------------------------------------------------------------------
............................GCTGCTCAACGATGAGGACCCGG......................................................................................................................................................................................................2311.001.00------------------------------------------------------1.00------------------------------------------------------------------------
....................................................................................................................................................................................TCTCACACACTTCCTCCAGTT................................................211.000.00---------------------------1.00---------------------------------------------------------------------------------------------------
....................................................................................................................................................TGGAGGAGGAGCCTGAGGCTATCT.............................................................................2411.001.00--------------1.00----------------------------------------------------------------------------------------------------------------
....................................................................................................................................................TGGAGGAGGAGCCTGAGGCTT................................................................................2111.002.00-----------------1.00-------------------------------------------------------------------------------------------------------------
..................................................................................................................................................TGTGGAGGAGGAGCCTGAGGCTAAA..............................................................................2511.0013.00-----------------------------------------1.00-------------------------------------------------------------------------------------
..................................................................................................................................................TGTGGAGGAGGAGCCTGAGAC..................................................................................2111.002.00----------------------------------------------------------------------------------------1.00--------------------------------------
..................................................................................................................................................TGTGGAGGAGGAGCCTGAGGCGTTT..............................................................................2511.0016.00----------------------------------------------------------------------------------------------------1.00--------------------------
..................................................................................................................................................TGTGGAGGAGGAGCCTGAGA...................................................................................2011.002.00----------------------1.00--------------------------------------------------------------------------------------------------------
...........................................................................TGGGATGGAGCTGGCGCG............................................................................................................................................................181.000.00-------------------------------1.00-----------------------------------------------------------------------------------------------
..................................................................................................................................................................................GGTCTCACACACTTCCTCCAGAA................................................231.000.00----------------------------------------------------------------------------------------------------------------------1.00--------
.........................................................................................................................................................................................................................GCTATGATCGTGAACCAGCTGTCCAAGAAGG.3111.001.00----------1.00--------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................AGGCGGCTATGATCGTGAACC................2111.001.00--------------------------------1.00----------------------------------------------------------------------------------------------
...................................................................................................................................................GTGGAGGAGGAGCCTGAGGCTATC..............................................................................2411.001.00----------------------------1.00--------------------------------------------------------------------------------------------------
....................................................................................................................................................TGGAGGAGGAGCCTGAGGCTATAA.............................................................................2411.001.00-----------------------1.00-------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................CGGCTATGATCGTGAACTAGC.............211.000.00--------------------------------1.00----------------------------------------------------------------------------------------------
....................................................................................................................................................................................TCTCACACACTTCCTCCAGTAT...............................................221.000.00--------------------1.00----------------------------------------------------------------------------------------------------------
...................................AACGATGAGGACCCGGT.....................................................................................................................................................................................................1711.001.00-----------------------------1.00-------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................AGTGGTGACCAAGGCGTCT.............................191.000.00-------------------1.00-----------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................CTATGATCGTGAACCAGC.............1811.001.00----------------------------------------------------1.00--------------------------------------------------------------------------
...............................................................................................................................................................................................................................ATCGTGAACCAGCTGTCCAAGAAG..2411.001.00-------------------------------------------------------------------------1.00-----------------------------------------------------
............................................................................................................................................................................................................GGTGACCAAGGCGGCTATGATCGTGAACC................2911.001.00----------------------------1.00--------------------------------------------------------------------------------------------------
..................................................................................................................................................TGTGGAGGAGGAGCCTGAGTAA.................................................................................2211.002.00-------------------------1.00-----------------------------------------------------------------------------------------------------
..................................................................................................................................................TGTGGAGGAGGAGCCTGCGGT..................................................................................211.000.00---------1.00---------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................GTGGAGGAGGAGCCTGAGGCT.................................................................................2111.001.001.00------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................TGGAGGAGGAGCCTGAGGA..................................................................................191.000.00----------------------1.00--------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TCTCACACACTTCCTCCCGGT................................................211.000.00---------------1.00---------------------------------------------------------------------------------------------------------------
..................................................................................................................................................TGTGGAGGAGGAGCCTGA.....................................................................................1840.750.75----------------------------------0.25---------0.50----------------------------------------------------------------------------------
......................................................................................................................................................................................................GGTAGTGGTGACCAAG...................................1620.500.50--------------------------------0.50----------------------------------------------------------------------------------------------
..................................................................................................................................................TGTGGAGGAGGAGCCTGAAA...................................................................................2040.250.75-------------------------0.25-----------------------------------------------------------------------------------------------------
..................................................................................................................................................TGTGGAGGAGGAGCCTGAAGAA.................................................................................2240.250.75---------------------------------0.25---------------------------------------------------------------------------------------------
..................................................................................................................................................TGTGGAGGAGGAGCCTGAAGCT.................................................................................2240.250.75----0.25--------------------------------------------------------------------------------------------------------------------------

Antisense strand
CCACCCGGGCTCTGCCTGAGCTCACCAAGCTGCTCAACGATGAGGACCCGGTCTGTGAAGGGCCTGGAGGTGGGGTGGGATGGAGCTGGCTGTCCTCAGAGGGAGGGGTCATCTAAGGATGCCACGGCCTTTGCCTTCCTTCCCTCTGTGGAGGAGGAGCCTGAGGCTATCTGCTCAAGGTCTCACACACTTCCTCCAGGTAGTGGTGACCAAGGCGGCTATGATCGTGAACCAGCTGTCCAAGAAGGA
..............................................................................................................................................((.((((((((((((....(((((((..........)))))))....)))))))))..))).))...........................................
.............................................................................................................................................142.............................................................206.........................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		mjLiverKO2()
Liver Data. (Zcchc11 liver)		mjLiverWT1()
Liver Data. (liver)		mjLiverWT2()
Liver Data. (liver)		mjTestesWT4()
Testes Data. (testes)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		mjTestesWT3()
Testes Data. (testes)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR206941(GSM723282)
other. (brain)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR553582(SRX182788)
source: Brain. (Brain)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR206940(GSM723281)
other. (brain)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		mjLiverWT3()
Liver Data. (liver)		GSM314559(GSM314559)
ESC dgcr8 (454). (ESC)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR014234(GSM319958)
Ovary total. (ovary)		SRR095855BC5(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR206942(GSM723283)
other. (brain)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR065049(SRR065049)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR042476(GSM539868)
mouse heart tissue [09-002]. (heart)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)		GSM361430(GSM361430)
WholeCerebellum_1month_Ptc+-_Ink4c--_rep2. (brain)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		GSM640582(GSM640582)
small RNA in the liver with paternal control . (liver)		SRR095853(SRX039174)
sequencing of miRNA from wild type and diseas. (heart)		SRR525237(SRA056111/SRX170313)
Mus musculus domesticus miRNA sequencing. (Blood)		SRR038741(GSM527276)
small RNA-Seq. (brain)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR065047(SRR065047)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR014229(GSM319953)
10 dpp MILI. (mili testes)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR095855BC6(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR042481(GSM539873)
mouse pancreatic tissue [09-002]. (pancreas)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR095855BC3(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR065053(SRR065053)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR073955(GSM629281)
total RNA. (blood)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)
.......................................................................................................................................TTCCTTCCCTCTGTGCTCA............................................................................................... 191.000.00--------------------------------------------------------------------------------------------------------------1.00----------------
...........CTGCCTGAGCTCACCGACA........................................................................................................................................................................................................................... 191.000.00--------------------------------------------------------------------------------------------------------1.00----------------------
..................................................................................................................................................................................GGTCTCACACACTTCCTCCAGGT................................................ 2311.001.00-----------------------------1.00-------------------------------------------------------------------------------------------------
..................................................................................................................................................TGTGGAGGAGGAGCCTGAGGCT................................................................................. 2211.001.00------------------------------------------------------------------------------------------1.00------------------------------------
........................................................................................................................................................................................................................GGCTATGATCGTGAACCAGCTGTCCAA...... 2711.001.00-------------------------------------------------------------------1.00-----------------------------------------------------------
.........CTCTGCCTGAGCTCACCA.............................................................................................................................................................................................................................. 1821.001.00-------------------------------0.50-------------0.50---------------------------------------------------------------------------------
................................................................................................................................................................................AAGGTCTCACACACTTCCTCCAGGTA............................................... 2611.001.00--------------------1.00----------------------------------------------------------------------------------------------------------
.........................................................................................................................CCACGGCCTTTGCCTTCCTTCCCTCTGGT................................................................................................... 291.000.00--------------------------------------------------------------------------------------------------------------------------1.00----
...............CTGAGCTCACCAAGCTGCTCAACGA................................................................................................................................................................................................................. 2511.001.00--------------------------------------------------------------1.00----------------------------------------------------------------
...................................................................................AGCTGGCTGTCCTCAGAG.................................................................................................................................................... 1820.500.50------------------------------------------------------------------------------------------------------------------------------0.50
...................................................................................................................................................................................GTCTCACACACTTCCTC..................................................... 1740.500.50-----------------------------------------------------------------------------------------------------------------------------0.50-
........................................................GAAGGGCCTGGAGGT.................................................................................................................................................................................. 15100.100.10--------------0.10----------------------------------------------------------------------------------------------------------------