ID: uc007lgi.12
GENE: Erbb2(13)
chr11:98289311-98289499+


(2)
AGO1.ip 		(2)
AGO2.ip 		(2)
AGO3.ip 		(5)
BRAIN 		(2)
CELL-LINE 		(1)
DGCR8.mut 		(5)
EMBRYO 		(1)
ESC 		(1)
FIBROBLAST 		(1)
HEART 		(1)
KIDNEY 		(1)
LUNG 		(5)
OTHER 		(1)
OTHER.mut 		(1)
OVARY 		(1)
PANCREAS 		(3)
PIWI.ip 		(1)
PIWI.mut 		(7)
SKIN 		(1)
SPLEEN 		(8)
TESTES 		(1)
UTERUS

Sense strand
CAGTTCCTCCGGGGCCAGGAGTGTGTGGAGGAGTGCCGAGTATGGAAGGGGTACGAATTGCAGAGGAGTGGGTGGCTTGAGGGGTACTCGGGGTACTCTGCCCCACCCCAACCCCTTACTACACCCACCTCTCTCACAGGCTCCCCAGGGAGTATGTGAGGGGCAAGCACTGTCTGCCATGCCACCCCG
..........................................................((.((((..(((((((...((((((((....(((((.....)))))......))))))))...)))))))..)))))).....................................................
..................................................51......................................................................................139................................................
SizePerfect hitTotal NormPerfect NormAgo1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR394083(GSM855969)
background strain: C57BL6/SV129cell type: KRa. (cell line)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		RuiDcrWT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR095855BC1(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR037897(GSM510433)
ovary_rep2. (ovary)		mjTestesWT3()
Testes Data. (testes)
....................................................................................................................TACTACACCCACCTCTCTCACA...................................................22122.0022.0010.004.003.00-----1.00-----1.00--1.00-1.00------------------1.00--
....................................................................................................................TACTACACCCACCTCTCTCAC....................................................21114.0014.008.003.001.00---1.00------------------------1.00---------
....................................................................................................................TACTACACCCACCTCTCTCACC...................................................2219.0014.004.005.00---------------------------------------
....................................................................................................................TACTACACCCACCTCTCTCACT...................................................2219.0014.001.002.002.00---2.00---2.00------------------------------
.................................TGCCGAGTATGGAAGGG...........................................................................................................................................1717.007.00---7.00-------------------------------------
..........................................................TGCAGAGGAGTGGGTGGCTTGAGT...........................................................................................................2415.002.00-1.002.00-1.001.00-----------------------------------
..........................................................TGCAGAGGAGTGGGTGGCTTGA.............................................................................................................2214.004.00----1.00--1.00-------------1.00-------------1.00-----
....................................................................................................................TACTACACCCACCTCTCTCATT...................................................2213.002.001.00----2.00-----------------------------------
.........................................................TTGCAGAGGAGTGGGTGGCTTGA.............................................................................................................2312.002.00-2.00---------------------------------------
....................................................................................................................TACTACACCCACCTCTCTCA.....................................................2012.002.00-1.00----1.00----------------------------------
..........................................................TGCAGAGGAGTGGGTGGCTTGAT............................................................................................................2312.004.00-1.00--1.00------------------------------------
..................................................GTACGAATTGCAGAGGAGTGGGTGGCT................................................................................................................2712.002.00----------------1.00-------1.00----------------
..........................................................TGCAGAGGAGTGGGTGGCTTGAG............................................................................................................2312.002.00----1.00--------------------------------1.00---
...................................................................................................................TTACTACACCCACCTCTCTCA.....................................................2112.002.001.001.00---------------------------------------
..................................................................................................................CTTACTACACCCACCTCTCTCA.....................................................2212.002.002.00----------------------------------------
...................................................................................................................TTACTACACCCACCTCTCTCAC....................................................2212.002.00-1.00-------------------------1.00-------------
...................................................................................................................TTACTACACCCACCTCTCTCACT...................................................2311.002.00-----1.00-----------------------------------
....................................................................................................................TACTACACCCACCTCTCTCAA....................................................2111.002.00-----1.00-----------------------------------
.............................................................AGAGGAGTGGGTGGCTAT..............................................................................................................181.000.00--------------------------------1.00--------
..................................................GTACGAATTGCAGAGGAGTGGGTGGC.................................................................................................................2611.001.00------------1.00----------------------------
..........................................................TGCAGAGGAGTGGGTGGCTTGAA............................................................................................................2311.004.00-------1.00---------------------------------
...................................................................................................................TTACTACACCCACCTCTCTC......................................................2011.001.00--------------------------1.00--------------
...................................................................................................................TTACTACACCCACCTCTCTCTT....................................................2211.001.00--1.00--------------------------------------
.................................TGCCGAGTATGGAAGGGGTAC.......................................................................................................................................2111.001.00------------------1.00----------------------
...................................................................................................................................................................CAAGCACTGTCTGCCATGC.......1911.001.00----------------------1.00------------------
..........................................................TGCAGAGGAGTGGGTGGCTTGATT...........................................................................................................2411.004.00----1.00------------------------------------
....................................................................................................................................................GGAGTATGTGAGGGGCAAGCACTGTC...............2611.001.00------------------------------1.00----------
..........................................................TGCAGAGGAGTGGGTGGCTTG..............................................................................................................2111.001.00---------------------------------1.00-------
....................................................................................................................TACTACACCCACCTCTCTCC.....................................................201.000.00-1.00---------------------------------------
.......TCCGGGGCCAGGAGTGTGTGGAGGA.............................................................................................................................................................2511.001.00--------1.00--------------------------------
......................GTGTGGAGGAGTGCCGAGT....................................................................................................................................................1911.001.00--------------------1.00--------------------
.........................................................................................................................................................ATGTGAGGGGCAAGCACTGT................2011.001.00----------------------------------1.00------
.....................................................................GGGTGGCTTGAGGGGGGTT.....................................................................................................191.000.00---------------1.00-------------------------
..........................................................TGCAGAGGAGTGGGTGGCTTGC.............................................................................................................2211.001.00----1.00------------------------------------
....................................................................................................................TACTACACCCACCTCTCTCACCG..................................................2311.0014.001.00----------------------------------------
............................................................CAGAGGAGTGGGTGGCTTGAGA...........................................................................................................221.000.00-----------------------1.00-----------------
...................................................................................................................TTACTACACCCACCTCTCTCAT....................................................2211.002.00------------------------------------1.00----
.........................................................TTGCAGAGGAGTGGGTGG..................................................................................................................1820.500.50-0.50---------------------------------------
............GGCCAGGAGTGTGTGGAG...............................................................................................................................................................1820.500.50----------------------------------------0.50
..............................................................GAGGAGTGGGTGGCTTGAG............................................................................................................1920.500.50---------------------------------------0.50-

Antisense strand
CAGTTCCTCCGGGGCCAGGAGTGTGTGGAGGAGTGCCGAGTATGGAAGGGGTACGAATTGCAGAGGAGTGGGTGGCTTGAGGGGTACTCGGGGTACTCTGCCCCACCCCAACCCCTTACTACACCCACCTCTCTCACAGGCTCCCCAGGGAGTATGTGAGGGGCAAGCACTGTCTGCCATGCCACCCCG
..........................................................((.((((..(((((((...((((((((....(((((.....)))))......))))))))...)))))))..)))))).....................................................
..................................................51......................................................................................139................................................
SizePerfect hitTotal NormPerfect NormAgo1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR394083(GSM855969)
background strain: C57BL6/SV129cell type: KRa. (cell line)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		RuiDcrWT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR095855BC1(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR037897(GSM510433)
ovary_rep2. (ovary)		mjTestesWT3()
Testes Data. (testes)
.......................................................................................................................TACACCCACCTCTCTCATAG.................................................. 201.000.00---------1.00-------------------------------
..................................................................................................TGCCCCACCCCAACCCTAAA....................................................................... 201.000.00-------------1.00---------------------------
.............................................................................................TACTCTGCCCCACCCCAGCCC........................................................................... 211.000.00-----------1.00-----------------------------
......................................................................................................CCACCCCAACCCCTTAAAA.................................................................... 191.000.00-----------------------------1.00-----------
...........................................................................................................CCAACCCCTTACTACACC................................................................ 181.000.00-------------------------1.00---------------
.......................................................................................................................TACACCCACCTCTCTCA..................................................... 1711.001.00---------1.00-------------------------------
...................................................................................................GCCCCACCCCAACCCCTGGTC..................................................................... 211.000.00----------------------------1.00------------
................................................GGGTACGAATTGC................................................................................................................................ 1330.330.33-----------0.33-----------------------------