ID: uc007ksx.3
GENE: Tmem49(3)
chr11:86478242-86478491-


(1)
AGO.mut 		(4)
AGO2.ip 		(6)
B-CELL 		(11)
BRAIN 		(4)
CELL-LINE 		(8)
EMBRYO 		(8)
ESC 		(1)
FIBROBLAST 		(1)
HEART 		(1)
KIDNEY 		(2)
LIVER 		(3)
LYMPH 		(12)
OTHER 		(2)
OTHER.mut 		(2)
PANCREAS 		(3)
PIWI.ip 		(4)
SPLEEN 		(11)
TESTES 		(1)
THYMUS 		(1)
TOTAL-RNA

Sense strand
ACAGAAGGCTGATCTGAGTTTGGTACTTTGAACTCCTTAAATTTGCATGGTCTTAATGTTAAATCTCATTTATACTTTTGAGGTATTTTTATGCTATTAGAGATACAAGACAGCAAGGTGGGTCGATTTTTTTTTTTCTTTGAAAACGGTAGCACAGATGTTAGGAATTCTCCTTTAACTTCCATGCTGTTGTTTTTCAGACCCCTCTTCAGTTCATGAGAAGAAGAGAAGGGATCGGGAAGAAAGACAG
............................................................................................................................................(((((((..(((((..((.(((((((....))))..))).))..)))))..))))).))...................................................
.......................................................................................................................................136.............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR073955(GSM629281)
total RNA. (blood)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR073954(GSM629280)
total RNA. (blood)		SRR065053(SRR065053)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR042481(GSM539873)
mouse pancreatic tissue [09-002]. (pancreas)		SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR206941(GSM723282)
other. (brain)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR095855BC6(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR037903(GSM510439)
testes_rep4. (testes)		SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR037937(GSM510475)
293cand2. (cell line)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR037938(GSM510476)
293Red. (cell line)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)
............................................................................................................................................TGAAAACGGTAGCACAGATGTT........................................................................................22121.0021.00---3.00--1.00--2.002.001.00-1.00-1.00---1.00-------------1.00-1.001.001.00-1.00----1.00---1.001.00----------------------1.00---
...........................................................................................................................................TTGAAAACGGTAGCACAGATGTT........................................................................................23111.0011.00-2.00--1.00--------1.00-1.00---1.00-------1.00--------------1.00--1.00-----------------1.00-1.00----------
............................................................................................................................................TGAAAACGGTAGCACAGATGT.........................................................................................2116.006.00-----3.00-------------------1.00------------1.00--------------------1.00----------------
...........................................................................................................................................TTGAAAACGGTAGCACAGATGT.........................................................................................2215.005.00-----------1.00----2.00------------------------------1.00--------------------1.00-------
............................................................................................................................................TGAAAACGGTAGCACAGATGTTA.......................................................................................2314.004.00----1.00----------------1.00----1.00--------------1.00----------------------------------
......................................................................................................................................................................................................................CATGAGAAGAAGAGAAGGGATCGGG...........2513.003.003.00---------------------------------------------------------------------------
..........................................................................................................................................TTTGAAAACGGTAGCACAGATGT.........................................................................................2313.003.002.00--------------------------------------------------------1.00------------------
...................................................................................................................................................................................TTCCATGCTGTTGTTTTTCAGT.................................................223.000.00------------------------1.00------------------------------1.00-----------1.00--------
...........................................................................................................................................TTGAAAACGGTAGCACAGATGTTAGGAAT..................................................................................2912.002.00------------2.00---------------------------------------------------------------
..................................................................................................................................................................................................................................AGAAGGGATCGGGAAGAAAGACATAA262.000.002.00---------------------------------------------------------------------------
........................................................................................................................................................................................................................TGAGAAGAAGAGAAGGGATCGGGAAG........2611.001.00----------------------------------------------------------------1.00-----------
............................................................................................................................................................................................................................AAGAAGAGAAGGGATCGGGA..........2011.001.00--------------------1.00-------------------------------------------------------
.........................................................................................................................................................................................................................GAGAAGAAGAGAAGGGATCGGGAAGT.......261.000.00----------------------------------------------1.00-----------------------------
...........................................................................................................................................TTGAAAACGGTAGCACAGATGTA........................................................................................2311.005.00-----------------------------1.00----------------------------------------------
............................................................................................................................................TGAAAACGGTAGCACAGATG..........................................................................................2011.001.00------------------------------1.00---------------------------------------------
...................................................................................................................................................................................................................GTTCATGAGAAGAAGAGAAGG..................2111.001.00-------------------------------1.00--------------------------------------------
.............................................................................................................................................................................................................................AGAAGAGAAGGGATCGGGAAGAA......2311.001.00--1.00-------------------------------------------------------------------------
...........................................................................................................................CGATTTTTTTTTTTCTCTG............................................................................................................191.000.00----------------------------------------------------------------------1.00-----
...................................................................................................................................................................................................................................GAAGGGATCGGGAAGAAAGACCGA241.000.00------1.00---------------------------------------------------------------------
.................................................................................................................................................................................................................................GAGAAGGGATCGGGAAGAAAGA...2211.001.00-----------------------1.00----------------------------------------------------
..........................................................................................................................................TTTGAAAACGGTAGCACAGATGTT........................................................................................2411.001.00-1.00--------------------------------------------------------------------------
...........................................................................................................................................TTGAAAACGGTAGCACAGGTGT.........................................................................................221.000.00-------------------------------------------1.00--------------------------------
........................................................................................................................................................................................................................TGAGAAGAAGAGAAGGGATCGGGAA.........2511.001.00-------1.00--------------------------------------------------------------------
..............................................................................................................................................................................................................................GAAGAGAAGGGATCGGGAAG........2011.001.00----1.00-----------------------------------------------------------------------
..............................................................................................................................................................................................................................GAAGAGAAGGGATCGGGAAGA.......2111.001.00-------1.00--------------------------------------------------------------------
.............................................................................................................................................................................TTTAACTTCCATGCTGTTGTTTTTCAG..................................................2711.001.00--------------------------------------------------------1.00-------------------
...........................................................................................................................................TTGAAAACGGTAGCACAGATGTTA.......................................................................................2411.001.00--------------1.00-------------------------------------------------------------
...................................................................................................................................................................................................................GTTCATGAGAAGAAGAGAAGGGA................2311.001.00-----------------------------------------------------------------------1.00----
.............................................................................................................................ATTTTTTTTTTTCTTTGG...........................................................................................................181.000.00---------------------------------------------------1.00------------------------
...............................................................................................................................................................................................................TTCAGTTCATGAGAAGAAGAGAAGGG.................2611.001.00------------------1.00---------------------------------------------------------
...............................................................................................................................................................................................................................AAGAGAAGGGATCGGGAAGAAAG....2311.001.00----------------------1.00-----------------------------------------------------
...........................................................................................................................................................................................................................................CGGGAAGAAAGACAGAAG181.000.00-1.00--------------------------------------------------------------------------
................................................................................................................................................................................................................................AGAGAAGGGATCGGGAAGAAAGAC..2411.001.00--------------------1.00-------------------------------------------------------
....................................................................................................................................................................................TCCATGCTGTTGTTTTTCAG..................................................2011.001.00----------------------------------------1.00-----------------------------------
........................................................TGTTAAATCTCATTTTGC................................................................................................................................................................................181.000.00------------------------------------------------------------1.00---------------
.................................................................................................................................................................................................................................GAGAAGGGATCGGGAAGAAAG....2111.001.00--1.00-------------------------------------------------------------------------
.............................................................................................................................................................................................................................AGAAGAGAAGGGATCACTG..........191.000.00----------------------------------------------------1.00-----------------------
.................................................................................................................................................................................................................CAGTTCATGAGAAGAAGAGAAGGGA................2511.001.00-------------------------------------------------------------1.00--------------
........................................................................................................................................................................................................................TGAGAAGAAGAGAAGGGATCGGGAAGT.......2711.001.00------------------1.00---------------------------------------------------------
...........................................................................................................................................TTGAAAACGGTAGCACAGATG..........................................................................................2111.001.00--------------------------------1.00-------------------------------------------
.............................................................................................................................................GAAAACGGTAGCACAGATGTTA.......................................................................................2211.001.00--------------1.00-------------------------------------------------------------
........................................................................................................................................................................................................................................GATCGGGAAGAAAGACAG1811.001.00--1.00-------------------------------------------------------------------------
.............................................................................................................................................GAAAACGGTAGCACAGATGTT........................................................................................2111.001.00--------------------------------------------------1.00-------------------------
.................................................................................................................................................................................ACTTCCATGCTGTTGTTTTTC....................................................2120.500.50-----------------------0.50----------------------------------------------------
.....................................................................................................................................................................................................................................AGGGATCGGGAAGAAAGA...1820.500.50----------------------0.50-----------------------------------------------------
..................................................................................................................................................................................................................................AGAAGGGATCGGGAAGAA......1820.500.50---------------------------------------------------------------------------0.50
............................................................................................................................................................................................................CTCTTCAGTTCATGAGA.............................1720.500.50-------------------------------------------------------------------------0.50--
..........................................................................................................................................................................................................................AGAAGAAGAGAAGGGATCG.............1920.500.50--------------------------------------------------------------------------0.50-
.........................................................................................................................................................................................................................GAGAAGAAGAGAAGGGAT...............1840.500.50---------------------0.50------------------------------------------------------
........................................................................................................................................................................................................................TGAGAAGAAGAGAAGGGA................1840.250.25---------------------0.25------------------------------------------------------

Antisense strand
ACAGAAGGCTGATCTGAGTTTGGTACTTTGAACTCCTTAAATTTGCATGGTCTTAATGTTAAATCTCATTTATACTTTTGAGGTATTTTTATGCTATTAGAGATACAAGACAGCAAGGTGGGTCGATTTTTTTTTTTCTTTGAAAACGGTAGCACAGATGTTAGGAATTCTCCTTTAACTTCCATGCTGTTGTTTTTCAGACCCCTCTTCAGTTCATGAGAAGAAGAGAAGGGATCGGGAAGAAAGACAG
............................................................................................................................................(((((((..(((((..((.(((((((....))))..))).))..)))))..))))).))...................................................
.......................................................................................................................................136.............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		SRR073955(GSM629281)
total RNA. (blood)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR073954(GSM629280)
total RNA. (blood)		SRR065053(SRR065053)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR363959(GSM822761)
AdultSmall RNA Miwi IPread_length: 36. (testes)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR042481(GSM539873)
mouse pancreatic tissue [09-002]. (pancreas)		SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR206941(GSM723282)
other. (brain)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR095855BC6(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR037903(GSM510439)
testes_rep4. (testes)		SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR037937(GSM510475)
293cand2. (cell line)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR037938(GSM510476)
293Red. (cell line)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)
........................................................................................................................GGTCGATTTTTTTTTGCGC............................................................................................................... 193.000.00-----------------2.00----------1.00-----------------------------------------------
...........................................................................................................................................................................CCTTTAACTTCCATGTATC............................................................ 191.000.00-----------------------------------------------------1.00----------------------
..............................................................................................................................TTTTTTTTTTTCTTTGAAAAAAAA.................................................................................................... 241.000.00--------------------------------------------------------------1.00-------------
...GAAGGCTGATCTGAGGC...................................................................................................................................................................................................................................... 171.000.00--------1.00-------------------------------------------------------------------
................................................................................................................................................................................................TTTTTCAGACCCCTCAAA........................................ 181.000.00------------------------------------------------------------------1.00---------
.........................................................................................................................................................ACAGATGTTAGGAATATG............................................................................... 181.000.00---------------------------------------------------------------------1.00------
........................................................................................................................GGTCGATTTTTTTTTTTGG............................................................................................................... 191.000.00----------------------------------1.00-----------------------------------------
...............................................................................................................AGCAAGGTGGGTCGATCT......................................................................................................................... 181.000.00--------1.00-------------------------------------------------------------------
........CTGATCTGAGTTTGGTAA................................................................................................................................................................................................................................ 181.000.00------------------------------------------------------1.00---------------------