ID: uc007jto.12
GENE: Acadvl(7)
chr11:69826754-69826985-


(1)
AGO.mut 		(2)
AGO1.ip 		(10)
AGO2.ip 		(2)
AGO3.ip 		(3)
B-CELL 		(12)
BRAIN 		(2)
CELL-LINE 		(1)
DCR.mut 		(1)
DGCR8.mut 		(6)
EMBRYO 		(3)
ESC 		(5)
FIBROBLAST 		(1)
HEART 		(1)
KIDNEY 		(12)
LIVER 		(1)
LUNG 		(2)
LYMPH 		(5)
OTHER 		(1)
OTHER.ip 		(10)
OTHER.mut 		(1)
OVARY 		(8)
PIWI.ip 		(1)
PIWI.mut 		(6)
SKIN 		(4)
SPLEEN 		(1)
TDRD1.ip 		(31)
TESTES 		(2)
THYMUS 		(3)
TOTAL-RNA

Sense strand
CTATGGCACAAAGGCCCAGAGAGAAAAATACCTTCCCAGAGTGGCATCTGGTAAGGCAACCTTAAGAGACCCAGGGGTAAGGAGTGTGACACTGCTCACGGTGTTACAAGGAACTGCCTGGGGATGAGGGGGTGCAACTCTGGTGGTCAGGATCCCCAGTGAGCCCGTTCTCTCCCCCACAGGGCAGGCTTTGGCTGCTTTCTGCCTAACAGAGCCCTCGAGTGGATCCGAT
.......................................................................................................................(((((.(((.((((.((...((((.((.......)))))))).)))).)))..))))).......................................................
...................................................................................................................116...............................................................182................................................
SizePerfect hitTotal NormPerfect NormmjLiverKO3()
Liver Data. (Zcchc11 liver)		mjLiverWT3()
Liver Data. (liver)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		GSM640583(GSM640583)
small RNA in the liver with paternal Low prot. (liver)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		GSM640582(GSM640582)
small RNA in the liver with paternal control . (liver)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)		SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)		SRR059771(GSM562833)
CD4_control. (spleen)		SRR065045(SRR065045)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042482(GSM539874)
mouse skin tissue [09-002]. (skin)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		GSM640577(GSM640577)
small RNA in the liver with paternal control . (liver)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		GSM475281(GSM475281)
total RNA. (testes)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR073954(GSM629280)
total RNA. (blood)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306538(GSM750581)
19-24nt. (ago2 brain)		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR014236(GSM319960)
10 dpp total. (testes)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		GSM510453(GSM510453)
newborn_rep9. (total RNA)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		GSM510454(GSM510454)
newborn_rep10. (total RNA)
................................................................................GGAGTGTGACACTGCTGTTT....................................................................................................................................2013.000.008.005.00--------------------------------------------------------------------------------------------------
...............................................................................................................................................................TGAGCCCGTTCTCTCCCCCAC....................................................2119.009.00-----------3.00-------1.00-2.00---------------1.00------------------------------------1.00----1.00--------------------
...............................................................................................................................................................................................................AACAGAGCCCTCGAGTGGATCCGA.2417.007.00--7.00-------------------------------------------------------------------------------------------------
...............................................................................................................................................................TGAGCCCGTTCTCTCCCCCACAGT.................................................2417.002.00---3.00----------------------1.00--------------------------------------------------------1.00------------1.001.00--
......................................................................................................................TGGGGATGAGGGGGTGCAACTCT...........................................................................................2317.007.00--------1.00-1.001.00-----------------------------------------1.00----------1.00-------1.00--------------1.00------------
...............................................................................................................................................................TGAGCCCGTTCTCTCCCCCACA...................................................2216.006.00------------3.00-----1.001.00--------------------------------------------------------------------1.00-----------
...............................................................................AGGAGTGTGACACTGGTGT......................................................................................................................................195.000.001.00------------1.00------------------------1.00---------------1.00-----------------------------------1.00---------
.TATGGCACAAAGGCCCAGAGAGAAAAAT...........................................................................................................................................................................................................2814.004.00----------2.00----------------1.00----------------------------------------1.00-------------------------------
......................................................................................................................TGGGGATGAGGGGGTGCAACTC............................................................................................2214.004.00--3.00-----1.00-------------------------------------------------------------------------------------------
............................................................................GTAAGGAGTGTGACACTGCTCACGGTGT................................................................................................................................2813.003.00-----1.00---1.00------------------------------------------------------------------1.00-----------------------
....................................................................................................................CCTGGGGATGAGGGGGTGCAAC..............................................................................................2213.003.00----------------------------------------------1.00-1.00---1.00-----------------------------------------------
...............................................................................AGGAGTGTGACACTGCTGTTT....................................................................................................................................213.000.001.001.00---------------------------------------------1.00----------------------------------------------------
................................................................................GGAGTGTGACACTGCTGTTG....................................................................................................................................203.000.001.002.00--------------------------------------------------------------------------------------------------
......................................................................................................................TGGGGATGAGGGGGTGCAACT.............................................................................................2113.003.00----------------------------1.00---------------------------------------------------1.00------------1.00------
...........................................................................................................................ATGAGGGGGTGCAACTCT...........................................................................................1813.003.00---------------3.00------------------------------------------------------------------------------------
.........................................................AACCTTAAGAGACCCAAA.............................................................................................................................................................183.000.00-----------------------------------2.00-------------------------------1.00--------------------------------
......................................................................................................................TGGGGATGAGGGGGTGCAA...............................................................................................1912.002.00------------------------1.00-----------1.00---------------------------------------------------------------
......................................................................................................................TGGGGATGAGGGGGTGCAACTCTT..........................................................................................2412.007.00-------------------------------------1.00---------------------1.00----------------------------------------
...............................................................................................................................................................TGAGCCCGTTCTCTCCCCCACAG..................................................2312.002.00------------------1.00-------------------------------------------------------------------1.00-------------
...................................................................................................................................................................................................TGCTTTCTGCCTAACAGAGCCCTC.............2412.002.00------1.001.00--------------------------------------------------------------------------------------------
.....................................................................................................................CTGGGGATGAGGGGGTGCAA...............................................................................................2012.002.00----------------------------------------1.00--------------------------------------------------1.00--------
.....................................................................................................................CTGGGGATGAGGGGGTGCAAC..............................................................................................2112.002.00------------1.00------------1.00--------------------------------------------------------------------------
..................GAGAGAAAAATACCTTCCCAGA................................................................................................................................................................................................2212.002.00----------------------------------2.00-----------------------------------------------------------------
......................................................................................................................TGGGGATGAGGGGGTGCAAC..............................................................................................2012.002.00-------------------1.00-------------------------------------------------------1.00------------------------
.........................................................................................................................................................................................................CTGCCTAACAGAGCCCTCGAGTGGATCC...2812.002.00------1.00---1.00-----------------------------------------------------------------------------------------
.................................................................................................................................................................AGCCCGTTCTCTCCCCCACAGT.................................................221.000.00-----------------------1.00----------------------------------------------------------------------------
....................................................................................................................CCTGGGGATGAGGGGGTGCAACT.............................................................................................2311.001.00--------------------------------------------------------------1.00-------------------------------------
......................................................................................................................TGGGGATGAGGGGGTGCAAA..............................................................................................2011.002.00----------------------------1.00-----------------------------------------------------------------------
.....................................................................................................................CTGGGGATGAGGGGGCTC.................................................................................................181.000.00------------------------------------------------------------------1.00---------------------------------
..............................................................................................................................................................................................................TAACAGAGCCCTCGAGTGGATCCGATGTT2911.001.00------1.00---------------------------------------------------------------------------------------------
....................................................................................................................CCTGGGGATGAGGGGGTGCAACTCT...........................................................................................2511.001.00--------1.00-------------------------------------------------------------------------------------------
...............................................................................................................................................................................................TGGCTGCTTTCTGCCTAACAGAGCCCTCGA...........3011.001.00-------------------------------------------------------------------------------------1.00--------------
.TATGGCACAAAGGCCCAGAGAGAAAAATA..........................................................................................................................................................................................................2911.001.00-----------------------------------------------------------------1.00----------------------------------
..........................................................................................................................................................................................................TGCCTAACAGAGCCCTCGAGTGGATCCGA.2911.001.00------1.00---------------------------------------------------------------------------------------------
........................................................................................................................................................................................................TCTGCCTAACAGAGCCCTCGAGTGGATC....2811.001.00----------1.00-----------------------------------------------------------------------------------------
......................................................................................................................TGGGGATGAGGGGGTGCAACTCTGG.........................................................................................2511.001.00---------------------------------------------------------------1.00------------------------------------
................................................................................GGAGTGTGACACTGCTGCTC....................................................................................................................................201.000.001.00---------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................TGCCTAACAGAGCCCTCGAGTGGATCC...2711.001.00---------1.00------------------------------------------------------------------------------------------
....................GAGAAAAATACCTTCCCAGAGTGGCATC........................................................................................................................................................................................2811.001.00--------------1.00-------------------------------------------------------------------------------------
.................................................................................................................................................................AGCCCGTTCTCTCCCCCACCGT.................................................221.000.00-----------------------1.00----------------------------------------------------------------------------
................................................................................................................................................................................................GGCTGCTTTCTGCCTAACAGAGCCC...............2511.001.00------------------------------------------------------------------------------------1.00---------------
......................................................................................................................TGGGGATGAGGGGGTGCAATT.............................................................................................2111.002.00-----------------------------------------------------------------------------------------1.00----------
...............................................................................................................................................................TGAGCCCGTTCTCTCCCCCACC...................................................2211.009.00-------------------------1.00--------------------------------------------------------------------------
..............................................................................................................................................................................................................TAACAGAGCCCTCGAGTGGATCCG..2411.001.00---1.00------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................AGAGCCCTCGAGTGGATCCGAT2211.001.00---------------------1.00------------------------------------------------------------------------------
.......................................................................................................................GGGGATGAGGGGGTGCAACTCT...........................................................................................2211.001.00-------------------------------------------1.00--------------------------------------------------------
...............................................................................AGGAGTGTGACACTGGTG.......................................................................................................................................181.000.00--------1.00-------------------------------------------------------------------------------------------
............................................................................................................................................................................................................CCTAACAGAGCCCTCGAGTGGATCC...2511.001.00-------1.00--------------------------------------------------------------------------------------------
...............................................................................AGGAGTGTGACACTGGT........................................................................................................................................171.000.00-------------1.00--------------------------------------------------------------------------------------
...............................................................................AGGAGTGTGACACTGGTGG......................................................................................................................................191.000.00-------------1.00--------------------------------------------------------------------------------------
..ATGGCACAAAGGCCCAGAGA..................................................................................................................................................................................................................2011.001.00-----------------------------------------------------------------------1.00----------------------------
.....................................................................................................................CTGGGGATGAGGGGGTGCAAT..............................................................................................2111.002.00-----------------------------------------------------------------------------------------------1.00----
...............................................................................................................................................................TGAGCCCGTTCTCTCCCCCATT...................................................221.000.00-------------------------------------------------------1.00--------------------------------------------
.....................................................................................................................CTGGGGATGAGGGGGTGCAACTCTG..........................................................................................2511.001.00----------------------------------------------------------1.00-----------------------------------------
...................................................................................................................................................................................................TGCTTTCTGCCTAACAGAGCCCTCGA...........2611.001.00-----------------1.00----------------------------------------------------------------------------------
..............................................................................AAGGAGTGTGACACTGCTCACGGTGT................................................................................................................................2611.001.00----------------1.00-----------------------------------------------------------------------------------
..............................................................................................................................................................GTGAGCCCGTTCTCTCCCCCAC....................................................2211.001.00---1.00------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................CCTAACAGAGCCCTCGAGTGGATCCGA.2711.001.00-------1.00--------------------------------------------------------------------------------------------
..............CCCAGAGAGAAAAATACCTTCCCAGAGTGTC...........................................................................................................................................................................................311.000.00-----------------1.00----------------------------------------------------------------------------------
.TATGGCACAAAGGCCCAGATAAA................................................................................................................................................................................................................231.000.00-------------------------------------------------1.00--------------------------------------------------
...................AGAGAAAAATACCTTCCCAGAGTGGCA..........................................................................................................................................................................................2711.001.00---------1.00------------------------------------------------------------------------------------------
...............................................................................AGGAGTGTGACACTGCG........................................................................................................................................171.000.00----------------------1.00-----------------------------------------------------------------------------
...............................................................................AGGAGTGTGACACTGGGTT......................................................................................................................................191.000.00--------------------------------------------------------------------------------------------1.00-------
.TATGGCACAAAGGCCCAGAGAGAA...............................................................................................................................................................................................................2411.001.00---------1.00------------------------------------------------------------------------------------------
........................................................................AGGGGTAAGGAGTGTGGT..............................................................................................................................................181.000.00----------------------1.00-----------------------------------------------------------------------------
....................................................................................................................CCTGGGGATGAGGGGGTGCAACTCTTTT........................................................................................2811.001.00------------------1.00---------------------------------------------------------------------------------
...............................................................................................................................................................................................TGGCTGCTTTCTGCCTAACAGAGCCCTCGATT.........3211.001.00-------1.00--------------------------------------------------------------------------------------------
...............................................................................................................................................................................................TGGCTGCTTTCTGCCTAACAGAGCCCTCGTT..........311.000.00------1.00---------------------------------------------------------------------------------------------
...............................................................................................................................................................TGAGCCCGTTCTCTCCCCCACAGTA................................................2511.002.00---1.00------------------------------------------------------------------------------------------------
................................................................................GGAGTGTGACACTGCTGTCA....................................................................................................................................201.000.00-1.00--------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................TGCCTAACAGAGCCCTCGAGTGGATCCA..2811.001.00--------------------------------------------------1.00-------------------------------------------------
...............................................................................................................................................................................................................AACAGAGCCCTCGAGTGGA......1911.001.00---------------------------------------------------1.00------------------------------------------------
.................................................................GAGACCCAGGGGTAAGGAGTGTGACA.............................................................................................................................................2611.001.00------------------------------------------------------------------------------1.00---------------------
........................................................................................................................................................................................................TCTGCCTAACAGAGCCCTCGA...........2111.001.00----------------------------------------------------------------------1.00-----------------------------
.......ACAAAGGCCCAGAGAGAAAAAT...........................................................................................................................................................................................................2211.001.00----------------------------------------------------------------------------------------------1.00-----
................................................................................GGAGTGTGACACTGCTTTTT....................................................................................................................................201.000.00-1.00--------------------------------------------------------------------------------------------------
.................................TCCCAGAGTGGCATCTGGG....................................................................................................................................................................................191.000.00---------------------------------------1.00------------------------------------------------------------
...............................................................................................................................................................TGAGCCCGTTCTCTCCCCCACAAA.................................................2411.006.00---1.00------------------------------------------------------------------------------------------------
................................................................................GGAGTGTGACACTGCTGATT....................................................................................................................................201.000.001.00---------------------------------------------------------------------------------------------------
...............................................................................................................................................................TGAGCCCGTTCTCTCCCCCACT...................................................2211.009.00--------1.00-------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................AACAGAGCCCTCGAGTGGATCCGCTGT271.000.00---------------------------------------------------------1.00------------------------------------------
...............................................................................................................................................................TGAGCCCGTTCTCTCCCCCACAGC.................................................2411.002.00--------------------------1.00-------------------------------------------------------------------------
...............................................................................................................................................................TGAGCCCGTTCTCTCCCCCACAGAA................................................2511.002.00------------------------1.00---------------------------------------------------------------------------
............................................................................GTAAGGAGTGTGACACTGCTCACGGTGTT...............................................................................................................................2911.001.00--------------------1.00-------------------------------------------------------------------------------
...............................................................................AGGAGTGTGACACTGATCT......................................................................................................................................191.000.00-------------1.00--------------------------------------------------------------------------------------
................................................................................GGAGTGTGACACTGCCGTT.....................................................................................................................................191.000.00-1.00--------------------------------------------------------------------------------------------------
.........AAAGGCCCAGAGAGAAAAATAC.........................................................................................................................................................................................................2211.001.00---------------------------------------------------------------------------------1.00------------------
..............................................................................................................................................................................................................TAACAGAGCCCTCGAGTGGATCCGAT2611.001.00-------1.00--------------------------------------------------------------------------------------------
.....................................................................................................................CTGGGGATGAGGGGGTGCAACTCTGGTGGTCAGGATCCCCAGTGAGCCCGTTCTCTCCCCCACA...................................................6411.001.00-------------------------------------------------------------1.00--------------------------------------
.............................................................................................................................................................AGTGAGCCCGTTCTCTCCCCCACA...................................................2411.001.00------------------------------------1.00---------------------------------------------------------------
...............................................................................AGGAGTGTGACACTGCTTTTT....................................................................................................................................211.000.00--------------------------------------------1.00-------------------------------------------------------
....................................................................................................................CCTGGGGATGAGGGGGTGCAA...............................................................................................2111.001.00------------------------------------------------------------1.00---------------------------------------
...............................................................................AGGAGTGTGACACTGGCGT......................................................................................................................................191.000.00--------------------------------------1.00-------------------------------------------------------------
..........................................................................................................................................................................................................TGCCTAACAGAGCCCTCGAGTGGATC....2611.001.00------------------------------1.00---------------------------------------------------------------------
........................................................................................................................................................................................................................CTCGAGTGGATCCGATGA181.000.00-----------------1.00----------------------------------------------------------------------------------
......................................................................................................................TGGGGATGAGGGGGTGCA................................................................................................1820.500.50--------------------------------------------------------------------------------------------------0.50-
....................................CAGAGTGGCATCTGGTA...................................................................................................................................................................................1720.500.50---------------------------------------------------------------------------------------------------0.50
........................................................................................................................GGGATGAGGGGGTGCA................................................................................................1630.330.33----------------------0.33-----------------------------------------------------------------------------

Antisense strand
CTATGGCACAAAGGCCCAGAGAGAAAAATACCTTCCCAGAGTGGCATCTGGTAAGGCAACCTTAAGAGACCCAGGGGTAAGGAGTGTGACACTGCTCACGGTGTTACAAGGAACTGCCTGGGGATGAGGGGGTGCAACTCTGGTGGTCAGGATCCCCAGTGAGCCCGTTCTCTCCCCCACAGGGCAGGCTTTGGCTGCTTTCTGCCTAACAGAGCCCTCGAGTGGATCCGAT
.......................................................................................................................(((((.(((.((((.((...((((.((.......)))))))).)))).)))..))))).......................................................
...................................................................................................................116...............................................................182................................................
SizePerfect hitTotal NormPerfect NormmjLiverKO3()
Liver Data. (Zcchc11 liver)		mjLiverWT3()
Liver Data. (liver)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		GSM640583(GSM640583)
small RNA in the liver with paternal Low prot. (liver)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		GSM640582(GSM640582)
small RNA in the liver with paternal control . (liver)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)		SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)		SRR059771(GSM562833)
CD4_control. (spleen)		SRR065045(SRR065045)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042482(GSM539874)
mouse skin tissue [09-002]. (skin)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		GSM640577(GSM640577)
small RNA in the liver with paternal control . (liver)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		GSM475281(GSM475281)
total RNA. (testes)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR073954(GSM629280)
total RNA. (blood)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306538(GSM750581)
19-24nt. (ago2 brain)		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR014236(GSM319960)
10 dpp total. (testes)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		GSM510453(GSM510453)
newborn_rep9. (total RNA)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		GSM510454(GSM510454)
newborn_rep10. (total RNA)
......................................................................................................................................................................................................TTTCTGCCTAACAGAGCCCTCGAGTGGA...... 2814.004.00----2.001.00----------1.00-----------------------------------------------------------------------------------
........................................................................................................................................................................................................TCTGCCTAACAGAGCCCTCGAGTGGA...... 2613.003.00----1.00---------1.00-----------------1.00-------------------------------------------------------------------
....................................................................................................................................TGCAACTCTGGTGGTCAGGATCCCCA.......................................................................... 2612.002.00----1.00---------1.00-------------------------------------------------------------------------------------
...........................................................................GGTAAGGAGTGTGACACTG.......................................................................................................................................... 1911.001.00------1.00---------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................GCCTAACAGAGCCCTCGAGTGGATCCG.. 2711.001.00---------------------------------1.00------------------------------------------------------------------
..................................................................................................................................GGTGCAACTCTGGTGGTCAGGATCCCCA.......................................................................... 2811.001.00----------------1.00-----------------------------------------------------------------------------------
................................................................................................CACGGTGTTACAAGGAACTGCCTGGGGAT........................................................................................................... 2911.001.00-------------------------------1.00--------------------------------------------------------------------
...................................................................................................................................GTGCAACTCTGGTGGTCAGGATCCCCA.......................................................................... 2711.001.00--------------------------------1.00-------------------------------------------------------------------
.....................................................................................................................................................................................................CTTTCTGCCTAACAGAGCCCTCGAGT......... 261.000.00-----1.00----------------------------------------------------------------------------------------------
...............................................................................AGGAGTGTGACACTGCTCACGGTGA................................................................................................................................ 251.000.00------------------------------1.00---------------------------------------------------------------------
..............................................................................................................................AGGGGGTGCAACTCTGGTGGTCATATC............................................................................... 271.000.00-----1.00----------------------------------------------------------------------------------------------
....................................................................................................................................................................CCGTTCTCTCCCCCAACG.................................................. 181.000.00---------------------------------------------------------------------1.00------------------------------
.......................................AGTGGCATCTGGTAAGGCAACCTTAAGA..................................................................................................................................................................... 2811.001.00----------------------------------------------------------------------------------1.00-----------------
.....................................................................................................................................................................................................CTTTCTGCCTAACAGAGCCCTCGAG.......... 2511.001.00----1.00-----------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................CTGCCTAACAGAGCCCTCGAGTGGAT..... 261.000.00---------------------------------------------1.00------------------------------------------------------
..................................................................................................................................................................................................CTGCTTTCTGCCTAACAGAGCCCTC............. 2511.001.00-----------------------------1.00----------------------------------------------------------------------
................................................................................................................................................................................................GGCTGCTTTCTGCCTAACAGAGCCCTC............. 2711.001.00-----------------------------1.00----------------------------------------------------------------------
........................................................................................................................................................................................CAGGCTTTGGCTGCTTTCTGCCTAACAGAGCC................ 3211.001.00---------1.00------------------------------------------------------------------------------------------
............GGCCCAGAGAGAAAAATACCTTCCCA.................................................................................................................................................................................................. 2611.001.00--------------------------------------------------------1.00-------------------------------------------
..........................................................................................................................GATGAGGGGGTGCAACTCTGGTGGTCA................................................................................... 2711.001.00--------------------1.00-------------------------------------------------------------------------------
.........................................................................................................................................................................................................CTGCCTAACAGAGCCCTCGAGTGGA...... 2511.001.00-----1.00----------------------------------------------------------------------------------------------
..........................................................................................................................................................................TCTCCCCCACAGGGCAAA............................................ 181.000.00-----------------------------------------------------------------------------1.00----------------------
........................................................................................................................................................................................................TCTGCCTAACAGAGCCCTCGAGTGGATTT... 291.000.00-----1.00----------------------------------------------------------------------------------------------
...........AGGCCCAGAGAGAAAAATACCTTCCCA.................................................................................................................................................................................................. 2711.001.00---------------------------1.00------------------------------------------------------------------------
.........................................................................................................................................................................................................CTGCCTAACAGAGCCCTCGAGTGGATT.... 271.000.00----1.00-----------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................CTTTCTGCCTAACAGAGCCCTCGAGTG........ 2711.001.00--------------------1.00-------------------------------------------------------------------------------
........................................................................................................................................................................................................TCTGCCTAACAGAGCCCTCGAGTGGAT..... 2711.001.00-------------------------------------------------------------------------1.00--------------------------
.................................................................................................ACGGTGTTACAAGGAACTGCCTGGGGA............................................................................................................ 2711.001.00------------------------------------------1.00---------------------------------------------------------
....................................................................................................................................................................CCGTTCTCTCCCCCACAGGG................................................ 2011.001.00---------------------------------1.00------------------------------------------------------------------
.........................................................................................................................................................................................................CTGCCTAACAGAGCCCTCGAGTGGAT..... 2611.001.00-----------------------------------------1.00----------------------------------------------------------
....................................................AAGGCAACCTTAAGAGACCCAGGGGTAA........................................................................................................................................................ 2811.001.00-------------------------------1.00--------------------------------------------------------------------
...................................................................................................................................................................................................TGCTTTCTGCCTAACAGAGCCCTCGA........... 2611.001.00----1.00-----------------------------------------------------------------------------------------------
......................................................GGCAACCTTAAGAGA................................................................................................................................................................... 1560.170.17---------------------------------------0.17------------------------------------------------------------