ID: uc007jhm.3
GENE: Mfap4(4)
chr11:61300459-61300630+


(1)
AGO2.ip 		(8)
BRAIN 		(9)
EMBRYO 		(2)
ESC 		(1)
LIVER 		(1)
LUNG 		(4)
OTHER 		(8)
OTHER.mut 		(1)
PANCREAS 		(13)
TESTES 		(8)
TOTAL-RNA

Sense strand
GAGCGACTACAAGCTGGGCTTTGGCCGTGCTGACGGGGAGTACTGGCTGGGTAAGGTGGGGCCATGGGGTGGGGGCTGCCCCTCAGCCAAGTCTCTGCTGACCGGCTGCCACCCGTCCCTAGGGCTGCAGAACCTGCACCTCCTGACACTGAAGCAGAAGTATGAGCTGCGC
.........................................................(((((....((((((.(((((....(((((.........))))).))))).))))))))))).....................................................
.........................................................58..............................................................122................................................
SizePerfect hitTotal NormPerfect NormmjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		mjTestesWT3()
Testes Data. (testes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		mjTestesWT2()
Testes Data. (testes)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR042481(GSM539873)
mouse pancreatic tissue [09-002]. (pancreas)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		SRR073954(GSM629280)
total RNA. (blood)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		GSM361398(GSM361398)
CGNP_P6_p53--_Ink4c--_rep1. (brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		GSM361415(GSM361415)
WholeCerebellum_P6_p53--_Ink4c--_rep4. (brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		GSM510453(GSM510453)
newborn_rep9. (total RNA)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM509276(GSM509276)
small RNA cloning by length. (testes)		SRR037910(GSM510447)
newborn_rep3. (total RNA)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		GSM361408(GSM361408)
WholeCerebellum_P6_wt_rep1. (brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		GSM261958(GSM261958)
oocytesmallRNA-24to30. (oocyte)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)
.....................................................................................................CCGGCTGCCACCCGTCCCTAGT.................................................22114.001.00-2.00-2.001.001.00-----1.00---1.00-------1.00--1.00--------1.00-----1.001.00-1.00--
....................................................................................................ACCGGCTGCCACCCGTCCCTAGT.................................................2310.000.00-3.002.001.00--1.00------------1.00--1.00----------1.00-------------
...............................................................................................................................................TGACACTGAAGCAGAAGTATGA.......2215.005.003.00-2.00--------------------------------------------
.................GCTTTGGCCGTGCTGACG.........................................................................................................................................1813.003.00---------3.00-------------------------------------
..................................................................................................TGACCGGCTGCCACCCGTCCCT....................................................2213.003.00-----------2.00-------1.00---------------------------
........................................................................................AAGTCTCTGCTGACCGGC..................................................................1813.003.00-------3.00---------------------------------------
.............................................................................................................................................CCTGACACTGAAGCAGAAGT...........2013.003.00-----2.00-------1.00---------------------------------
..............................................................CATGGGGTGGGGGCTGCCCCTC........................................................................................2213.003.00---3.00-------------------------------------------
.....................................................................................................CCGGCTGCCACCCGTCCCTAGA.................................................2213.001.001.00---1.00-------------1.00----------------------------
..................................................................................................................................AACCTGCACCTCCTGACACTGAAGCAGA..............2812.002.002.00----------------------------------------------
..................................................................................................TGACCGGCTGCCACCCGTCCCTAGA.................................................252.000.00------------2.00----------------------------------
...........................................................................................................................................CTCCTGACACTGAAGCAGAA.............2012.002.002.00----------------------------------------------
...................TTTGGCCGTGCTGACG.........................................................................................................................................1612.002.00----------1.00---------------------1.00--------------
..............................................................CATGGGGTGGGGGCTGCCCCTCAATTC...................................................................................271.000.00---1.00-------------------------------------------
.....................TGGCCGTGCTGACGGAAGA....................................................................................................................................191.000.00-------------------------1.00---------------------
...............GGGCTTTGGCCGTGCTGAC..........................................................................................................................................1911.001.00--------------------------------------1.00--------
...........................................................................................................................................CTCCTGACACTGAAGCAGAAGTAT.........2411.001.001.00----------------------------------------------
...................TTTGGCCGTGCTGACGGGGA.....................................................................................................................................2011.001.00-------1.00---------------------------------------
............................................................................................................................................TCCTGACACTGAAGCAGAAG............2011.001.00--1.00--------------------------------------------
..............................................................CATGGGGTGGGGGCTGCCCCTAT.......................................................................................231.000.00---1.00-------------------------------------------
................................................................TGGGGTGGGGGCTGCCCCTCAGCG....................................................................................241.000.00----1.00------------------------------------------
.............................................................................................................................TGCAGAACCTGCACCTCCTGAC.........................2211.001.00--1.00--------------------------------------------
............................GCTGACGGGGAGTACTGGCT............................................................................................................................2011.001.00--------1.00--------------------------------------
.....................................................................................................CCGGCTGCCACCCGTCCCTCGT.................................................221.000.00-1.00---------------------------------------------
..............................................................................................................................................CTGACACTGAAGCAGAAGTATGAGCT....2611.001.00------1.00----------------------------------------
............................................................................................................................................TCCTGACACTGAAGCAGAAGTATGA.......2511.001.001.00----------------------------------------------
.....................................................................................................CCGGCTGCCACCCGTCCCTAG..................................................2111.001.00---1.00-------------------------------------------
...............................................................................................................................CAGAACCTGCACCTCCTGACACTGAAGC.................2811.001.00--1.00--------------------------------------------
..............................................................................................................................................CTGACACTGAAGCAGAAGT...........1911.001.001.00----------------------------------------------
.....................................................................................................CCGGCTGCCACCCGTCCCTA...................................................2011.001.00------1.00----------------------------------------
.....................................................................................................CCGGCTGCCACCCGTCCCTAGTAT...............................................2411.001.00-1.00---------------------------------------------
.............................................................CCATGGGGTGGGGGCTGCCCCTC........................................................................................2311.001.00----------1.00------------------------------------
..............................................................................................................................GCAGAACCTGCACCTCCTGACAC.......................2311.001.00------1.00----------------------------------------
.........................................................................................................................................ACCTCCTGACACTGAAGCAG...............2011.001.00------1.00----------------------------------------
....................................................................................................ACCGGCTGCCACCCGTCCCTAGTTAA..............................................261.000.00-1.00---------------------------------------------
...................................................................................................................................ACCTGCACCTCCTGACAC.......................1811.001.00----1.00------------------------------------------
........................................................................................................................AGGGCTGCAGAACCTGCACCTCC.............................2311.001.00--------1.00--------------------------------------
......................................................................................................CGGCTGCCACCCGTCCCTAG..................................................2011.001.00-------------------------------------1.00---------
..............................................................CATGGGGTGGGGGCTGCCCCTCAGCA....................................................................................261.000.00-------------1.00---------------------------------
...............................................TGGGTAAGGTGGGGCGC............................................................................................................171.000.00------------------------------1.00----------------
................................................................................................................................AGAACCTGCACCTCCTGACAC.......................2111.001.00------------------------1.00----------------------
...................................................................................................................................ACCTGCACCTCCTGACACTGAAGCA................2511.001.00------------------1.00----------------------------
...............................................TGGGTAAGGTGGGGCTCT...........................................................................................................181.000.00---------------------1.00-------------------------
................................ACGGGGAGTACTGGCTGGGTA.......................................................................................................................2111.001.00----------------------------------------1.00------
...............................................TGGGTAAGGTGGGGCTCG...........................................................................................................181.000.00----------------------------1.00------------------
............................................................................................................................................TCCTGACACTGAAGCAGA..............1811.001.00--1.00--------------------------------------------
....................................................................................................ACCGGCTGCCACCCGTCCCT....................................................2011.001.00------1.00----------------------------------------
........................................................................................................................AGGGCTGCAGAACCTGCACC................................2011.001.00----------------1.00------------------------------
...............................................................ATGGGGTGGGGGCTGCCCCTCT.......................................................................................221.000.00--------------1.00--------------------------------
.......................................................................................................................................GCACCTCCTGACACTGAAGCAGAAGT...........2611.001.00-----1.00-----------------------------------------
.................................................................GGGGTGGGGGCTGCCCCTCAGCC....................................................................................2311.001.00--------1.00--------------------------------------
.......................................................................................................................................GCACCTCCTGACACTGAAGCAGAAG............2511.001.00--------1.00--------------------------------------
......................................................................................................CGGCTGCCACCCGTCCCTAGT.................................................2111.001.00---------------1.00-------------------------------
...............................................................................................................................CAGAACCTGCACCTCCTGACACTGAAGCAGAAGT...........3411.001.001.00----------------------------------------------
...............................................................................................................................CAGAACCTGCACCTCCTGACACTGAAGCA................2911.001.00-------1.00---------------------------------------
.......................................................................GGGGCTGCCCCTCAGCCAAG.................................................................................2011.001.00----1.00------------------------------------------
..................CTTTGGCCGTGCTGACG.........................................................................................................................................1711.001.00-------1.00---------------------------------------
...................................................................GGTGGGGGCTGCCCCTCAGC.....................................................................................2011.001.00--------------1.00--------------------------------
............................................................................................................................................TCCTGACACTGAAGCAGAAGTATGAGC.....2711.001.00------------1.00----------------------------------
........ACAAGCTGGGCTTTGGCCGT................................................................................................................................................2011.001.00----------1.00------------------------------------
...............................................................................................................................................TGACACTGAAGCAGAAGT...........1811.001.00-----------------1.00-----------------------------
......CTACAAGCTGGGCTTTGGCCGTGCTGACG.........................................................................................................................................2911.001.00----------------1.00------------------------------
................................................................TGGGGTGGGGGCTGCCCCTCA.......................................................................................2111.001.00----1.00------------------------------------------
..................................................................GGGTGGGGGCTGCCCCTCAGCGGC..................................................................................241.000.00----1.00------------------------------------------
......................................................................................................................................TGCACCTCCTGACACTGAAG..................2011.001.00--1.00--------------------------------------------
.......TACAAGCTGGGCTTTGGCCGTGC..............................................................................................................................................2311.001.00---------------------------------------1.00-------
.....................................................................................................CCGGCTGCCACCCGTCCCTAGTA................................................2311.001.00-1.00---------------------------------------------
..........AAGCTGGGCTTTGGCCGTGCTGACG.........................................................................................................................................2511.001.00--------1.00--------------------------------------
.............................................................CCATGGGGTGGGGGCTGCCCCTCT.......................................................................................2411.001.00----------------------------------1.00------------
.............CTGGGCTTTGGCCGTGCTGACG.........................................................................................................................................2211.001.00--------------------1.00--------------------------
...............................................................................................................................................TGACACTGAAGCAGAAGTATGAGCCGA..271.000.00-----------------1.00-----------------------------
.....................................................................................................CCGGCTGCCACCCGTCCCTGGT.................................................221.000.00-1.00---------------------------------------------
............................................................................................................................................TCCTGACACTGAAGCAGAAGTATGAG......2611.001.001.00----------------------------------------------
.............................................................CCATGGGGTGGGGGCTGC.............................................................................................1811.001.00------1.00----------------------------------------
....................................GGAGTACTGGCTGGGTGT......................................................................................................................181.000.00---------------------------------------------1.00-
..............TGGGCTTTGGCCGTGCTGACG.........................................................................................................................................2111.001.00----------1.00------------------------------------
................................................................................................................................................GACACTGAAGCAGAAGT...........1720.500.50----0.50------------------------------------------
...............................................................................................................................CAGAACCTGCACCTCC.............................1650.200.20----------------------------------------------0.20

Antisense strand
GAGCGACTACAAGCTGGGCTTTGGCCGTGCTGACGGGGAGTACTGGCTGGGTAAGGTGGGGCCATGGGGTGGGGGCTGCCCCTCAGCCAAGTCTCTGCTGACCGGCTGCCACCCGTCCCTAGGGCTGCAGAACCTGCACCTCCTGACACTGAAGCAGAAGTATGAGCTGCGC
.........................................................(((((....((((((.(((((....(((((.........))))).))))).))))))))))).....................................................
.........................................................58..............................................................122................................................
SizePerfect hitTotal NormPerfect NormmjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		mjTestesWT3()
Testes Data. (testes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		mjTestesWT2()
Testes Data. (testes)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR042481(GSM539873)
mouse pancreatic tissue [09-002]. (pancreas)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		SRR073954(GSM629280)
total RNA. (blood)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		GSM361398(GSM361398)
CGNP_P6_p53--_Ink4c--_rep1. (brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		GSM361415(GSM361415)
WholeCerebellum_P6_p53--_Ink4c--_rep4. (brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		GSM510453(GSM510453)
newborn_rep9. (total RNA)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM509276(GSM509276)
small RNA cloning by length. (testes)		SRR037910(GSM510447)
newborn_rep3. (total RNA)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		GSM361408(GSM361408)
WholeCerebellum_P6_wt_rep1. (brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		GSM261958(GSM261958)
oocytesmallRNA-24to30. (oocyte)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)
...........................................................................CTGCCCCTCAGCCAAGTAAT............................................................................. 203.000.00-----2.00-------1.00---------------------------------
..................CTTTGGCCGTGCTGACG......................................................................................................................................... 1711.001.00-------------------------------1.00---------------
.................GCTTTGGCCGTGCTGACG......................................................................................................................................... 1811.001.00-------------------------------------------1.00---
...............................................................................CCCTCAGCCAAGTCTCAT........................................................................... 181.000.00---------1.00-------------------------------------
.....................................................................................................................................CTGCACCTCCTGACACT...................... 1721.001.00------------------------------------1.00----------
..................CTTTGGCCGTGCTGACGGGGA..................................................................................................................................... 2111.001.00-----------------------------1.00-----------------