ID: uc007ihp.3
GENE: Eml6(3)
chr11:29647484-29647733-


(20)
AGO2.ip 		(1)
AGO3.ip 		(48)
BRAIN 		(1)
DCR.mut 		(2)
DGCR8.mut 		(7)
EMBRYO 		(3)
ESC 		(1)
FIBROBLAST 		(3)
HEART 		(2)
KIDNEY 		(1)
LIVER 		(1)
LUNG 		(8)
OTHER 		(6)
OTHER.mut 		(1)
SKIN 		(1)
SPLEEN 		(11)
TESTES 		(1)
THYMUS 		(1)
UTERUS

Sense strand
GTTGGGGAGGTAGAACACACCCTACCTATGAATTTTAGCATGGGCTGTGGGGCAACGGACTGTTTATTGGCTTTGTAGCCAGGAGCTGAGTTTGGATTTAAAGAAAAGCGTAACTGGGGCAGAGTTAGTGTTGGGAAAGACAGCCAAGAGAGTCTGTGGAACTGAGGAAGCAGATGGACTCAGTTCCTCTCCTCTTGCAGGTGTCAACAGGAGCCTATAAGCGCCAAGTACATGAAGTTCCCCTGGGGAA
..............................................................................................................................................((.(((((((.....(((((((((............))))))))).))).))))))....................................................
.........................................................................................................................................138...........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR553582(SRX182788)
source: Brain. (Brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR206940(GSM723281)
other. (brain)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR206939(GSM723280)
other. (brain)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR206941(GSM723282)
other. (brain)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR206942(GSM723283)
other. (brain)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR306538(GSM750581)
19-24nt. (ago2 brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		mjTestesWT3()
Testes Data. (testes)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		mjLiverWT3()
Liver Data. (liver)		SRR095853(SRX039174)
sequencing of miRNA from wild type and diseas. (heart)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR553586(SRX182792)
source: Testis. (testes)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR095855BC1(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306526(GSM750569)
19-24nt. (ago2 brain)		GSM261959(GSM261959)
oocytesmallRNA-19to30. (oocyte)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR073954(GSM629280)
total RNA. (blood)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR306528(GSM750571)
19-24nt. (ago2 brain)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR037929(GSM510467)
e7p5_rep3. (embryo)
..............................................................................................................................................GCCAAGAGAGTCTGTGGAACTGA.....................................................................................231220.00220.0042.0038.0024.0034.0012.005.008.004.002.001.00-5.002.006.007.003.001.00--3.001.00-5.003.00-1.002.00-1.001.001.00----1.002.00---------2.00---1.00-----1.00-----------1.00--------------------
...............................................................................................................................................CCAAGAGAGTCTGTGGAACTGA.....................................................................................221146.00146.0026.0010.0059.0012.008.007.001.005.00-1.00--2.001.001.00-1.00--2.00---1.001.001.00-----1.00------------1.00-1.001.001.001.00----------------1.00----------------------
.............................................................................................................................................AGCCAAGAGAGTCTGTGGAACTG......................................................................................231110.00110.0024.0010.0011.005.0017.004.003.003.002.003.002.003.001.001.002.00--4.00-1.001.00--1.001.002.001.001.001.004.00--------------------------------------------------------1.001.00-
.............................................................................................................................................AGCCAAGAGAGTCTGTGGAACTGA.....................................................................................241109.00109.0017.0012.0024.005.0010.002.006.004.004.001.00-1.004.00--1.00-1.00-1.001.00-2.00-2.001.001.001.00-1.00----1.001.001.00---------1.00--1.00------1.00--------1.00-----------------------
.............................................................................................................................................AGCCAAGAGAGTCTGTGGAACT.......................................................................................22198.0098.0035.0018.004.004.007.004.001.003.00-3.003.001.002.00-1.002.004.00------1.00-----------1.00--1.00---------1.001.00----------1.00----------------------------
............................................................................................................................................CAGCCAAGAGAGTCTGTGGAAC........................................................................................22184.0084.0026.0017.002.009.0014.003.00-2.00-2.001.00--1.001.00-1.00-----1.00-----1.00------1.00---------------1.00--------1.00----------------------------
.............................................................................................................................................AGCCAAGAGAGTCTGTGGAAC........................................................................................21183.0083.0020.0013.009.002.0011.004.001.00--1.003.001.00-1.001.00--1.004.002.00-2.00-1.00-1.00--------2.00--------2.00---------------------------------1.00-----------
..............................................................................................................................................GCCAAGAGAGTCTGTGGAACTG......................................................................................22170.0070.0012.0010.006.0011.006.004.003.00--1.001.001.00-3.001.00----1.00-------------8.00---------1.00---------------1.00-----------------------------
............................................................................................................................................CAGCCAAGAGAGTCTGTGGAACT.......................................................................................23157.0057.0011.007.002.0011.006.00-2.002.00-1.001.002.00--1.00-1.00--2.00---1.00-1.00----1.00-------1.00----------1.001.00------1.00---------1.00---------------------
...............................................................................................................................................CCAAGAGAGTCTGTGGAACTGAG....................................................................................23156.0056.003.004.003.004.004.004.001.001.002.002.002.00-1.001.00-1.00-2.00--3.00-2.00-2.00--1.00--1.00----1.003.00-1.00------1.00----1.00--2.003.00----------------------------------
..............................................................................................................................................GCCAAGAGAGTCTGTGGAACTGAG....................................................................................24142.0042.005.006.005.003.005.00-2.00-1.00-2.00-2.00--1.001.001.00-----1.001.00---1.00-1.00-----------------------------------------------1.001.00---1.00-1.00---
............................................................................................................................................CAGCCAAGAGAGTCTGTGGAACTG......................................................................................24140.0040.006.005.003.002.005.001.004.001.002.00---2.00-1.00-2.00---1.00------1.00---1.00---1.00---------1.00-----------1.00-------------------------------
.............................................................................................................................................AGCCAAGAGAGTCTGTGGAACTGAG....................................................................................25128.0028.006.004.004.003.003.00--1.001.00--------1.00--2.00--1.001.00------------------1.00---------------------------------------------
...............................................................................................................................................CCAAGAGAGTCTGTGGAACTG......................................................................................21123.0023.002.004.002.001.004.00----1.00-1.00---1.002.001.00--1.00---1.00-------------2.00--------------------------------------------------
..............................................................................................................................................GCCAAGAGAGTCTGTGGAACT.......................................................................................21120.0020.004.002.00-1.002.001.00--4.00-----1.001.00-------2.00--------------1.00-----1.00--------------------------------------------
..............................................................................................................................................GCCAAGAGAGTCTGTGGAAC........................................................................................20118.0018.001.002.001.002.005.001.00-1.00---1.00-1.00-----1.00-1.00-------------------------------------------------1.00-----------------
...............................................................................................................................................CCAAGAGAGTCTGTGGAACTGAGT...................................................................................24117.0056.001.001.006.002.001.00--1.00--1.00-1.00-------1.00----1.00------------------------1.00--------------------------------------
............................................................................................................................................CAGCCAAGAGAGTCTGTGGAACTGA.....................................................................................25115.0015.002.004.00-2.00-1.001.001.00---1.00------------1.00---2.00------------------------------------------------------------
....................................................................................................................................................................................CAGTTCCTCTCCTCTTGCAGT.................................................21112.005.00-1.00-1.00---2.001.00----2.00----------------1.00---1.00-------1.00------------------1.00-------------------1.00-------
............................................................................................................................................CAGCCAAGAGAGTCTGTGGA..........................................................................................20112.0012.007.00-1.003.00-----------1.00-------------------------------------------------------------------------
...........................................................................................................................................ACAGCCAAGAGAGTCTGTGGA..........................................................................................21111.0011.002.00-1.00-1.00---3.00----2.00-----------1.00-------------------------------------------------1.00-------------
.................................................................................................................................................AAGAGAGTCTGTGGAACTGAG....................................................................................21111.0011.002.001.002.00-1.00-1.00--------------------4.00-------------------------------------------------------------
.............................................................................................................................................AGCCAAGAGAGTCTGTGGAACTGT.....................................................................................24111.00110.001.001.00-1.002.00-2.00--1.00------------1.00---2.00--------------------------------------------------------------
...........................................................................................................................................ACAGCCAAGAGAGTCTGTGGAAC........................................................................................23110.0010.003.002.00--2.00-1.00-1.00-------------------1.00------------------------------------------------------------
...........................................................................................................................................ACAGCCAAGAGAGTCTGTGGAACT.......................................................................................24110.0010.00-3.00--3.00--1.00-------1.00--------------1.00--------------------1.00-------------------------------------
...........................................................................................................................................ACAGCCAAGAGAGTCTGTGGAACTGA.....................................................................................2619.009.001.00--2.002.00--1.00----------------1.00------1.00------------1.00--------------------------------------------
..............................................................................................................................................GCCAAGAGAGTCTGTGGAACTGT.....................................................................................2319.0070.001.003.00-2.001.00-----1.00---------------1.00--------------------------------------------------------------
..............................................................................................................................................GCCAAGAGAGTCTGTGGAA.........................................................................................1919.009.00-1.00----------------3.00--4.00----------------------------------------------------------1.00--------
.............................................................................................................................................AGCCAAGAGAGTCTGTGGAACTGAGT...................................................................................2618.0028.00-1.001.00-1.001.003.00-------------------------------------1.00--------------------------------------------
................................................................................................................................................CAAGAGAGTCTGTGGAACTGAG....................................................................................2218.008.001.001.00-2.00----------1.001.00---------------1.00----1.00----------------------------------------------------
.............................................................................................................................................AGCCAAGAGAGTCTGTGGA..........................................................................................1918.008.00-1.002.00-1.00-2.00------------------1.00---1.00-----------------------------------------------------------
..................................................................................................................................................................TGAGGAAGCAGATGGTATA.....................................................................197.000.00------------------1.00--------------------2.00-2.00-------------2.00---------------------------------
...........................................................................................................................................ACAGCCAAGAGAGTCTGTGGAACTG......................................................................................2517.007.00----1.00---------------------------6.00--------------------------------------------------------
............................................................................................................................................CAGCCAAGAGAGTCTGTGGAA.........................................................................................2117.007.00--1.001.001.00--1.00-1.001.00----------------1.00-------------------------------------------------------------
..........................................................................................................................................GACAGCCAAGAGAGTCTGTGGA..........................................................................................2217.007.00----1.001.00--5.00--------------------------------------------------------------------------------
................................................................................................................................................CAAGAGAGTCTGTGGAACTGA.....................................................................................2117.007.002.001.00-3.00--1.00----------------------------------------------------------------------------------
..............................................................................................................................................GCCAAGAGAGTCTGTGGAACTGAGT...................................................................................2517.0042.00-1.003.001.00--2.00----------------------------------------------------------------------------------
...............................................................................................................................................CCAAGAGAGTCTGTGGAACTGAGA...................................................................................2416.0056.001.001.001.001.00------------------------1.001.00-----------------------------------------------------------
..TGGGGAGGTAGAACAGGTC.....................................................................................................................................................................................................................................195.000.00------------------1.00------------------1.00-1.002.00------------------------------------------------
....................................................................................................................................................................................CAGTTCCTCTCCTCTTGCAG..................................................2015.005.00----------------1.00-------------2.00-----------------1.00---------------------------1.00------------
..............................................................................................................................................GCCAAGAGAGTCTGTGGAACTGAGA...................................................................................2515.0042.001.001.00-1.002.00------------------------------------------------------------------------------------
...................................................................................................................................................................................TCAGTTCCTCTCCTCTTGCAG..................................................2115.005.00-----2.00-1.00---------------------1.00-------------------------------1.00---------------------------
...............................................................................................................................................CCAAGAGAGTCTGTGGAACTGAGG...................................................................................2415.005.001.00-1.00------------1.00-1.00-------1.00---------------------------------------------------------------
............................................................................................................................................CAGCCAAGAGAGTCTGTGGAACTGAG....................................................................................2615.005.00--1.001.002.001.00-----------------------------------------------------------------------------------
..........................................................................................................................................GACAGCCAAGAGAGTCTGTGG...........................................................................................2114.004.00-1.00-1.00------------------------1.00-----1.00------------------------------------------------------
...............................................................................................................................................CCAAGAGAGTCTGTGGAACTGT.....................................................................................2214.0023.00-1.00-1.00----1.00-----------------1.00--------------------------------------------------------------
.............................................................................................................................................AGCCAAGAGAGTCTGTGGAA.........................................................................................2014.004.00-1.00-1.00--------------------1.00--------------------------1.00-------------------------------------
...............................................................................................................................................CCAAGAGAGTCTGTGGAACTGAT....................................................................................2314.00146.00-1.001.001.00--1.00----------------------------------------------------------------------------------
............................................................................................................................................CAGCCAAGAGAGTCTGTGGAAG........................................................................................2213.007.00--1.00--2.00-----------------------------------------------------------------------------------
.................................................................................................................................................AAGAGAGTCTGTGGAACTGAGG...................................................................................2213.003.00-1.00--1.00------------1.00-----------------------------------------------------------------------
.............................................................................................................................................AGCCAAGAGAGTCTGTGGAAATG......................................................................................2313.004.00-------2.00---------------------------1.00-----------------------------------------------------
..........................................................................................................................................GACAGCCAAGAGAGTCTGTGGAAC........................................................................................2413.003.00-1.00-----1.00---1.00-----------------------------------------------------------------------------
..........................................................................................................................................GACAGCCAAGAGAGTCTGTGGAACTG......................................................................................2613.003.001.001.00-1.00-------------------------------------------------------------------------------------
.............................................................................................................................................AGCCAAGAGAGTCTGTGGAACTGAGA...................................................................................2613.0028.001.001.001.00--------------------------------------------------------------------------------------
...........................................................................................................................................ACAGCCAAGAGAGTCTGTGGAACTGAGT...................................................................................2813.001.00---2.001.00------------------------------------------------------------------------------------
..........................................................................................................................................GACAGCCAAGAGAGTCTGTGGAACTGAG....................................................................................2813.003.00-----------------------------------------------3.00-----------------------------------------
..............................................................................................................................................GCCAAGAGAGTCTGTGGGACT.......................................................................................2112.001.00---1.00-----------------------------------------------------------------1.00-------------------
............................................................................................................................................CAGCCAAGAGAGTCTGTGG...........................................................................................1912.002.00----1.00----------1.00-------------------------------------------------------------------------
.............................................................................................................................................................GGAACTGAGGAAGCATTT...........................................................................182.000.00--------------------------------------------------------------2.00--------------------------
............................................................................................................................................CAGCCAAGAGAGTCTGTGGGACT.......................................................................................2312.002.00-------------------------------------2.00---------------------------------------------------
.............................................................................................................................................AGCCAAGAGAGTCTGTGGAACTGAGG...................................................................................2612.002.00--1.00---1.00----------------------------------------------------------------------------------
..TGGGGAGGTAGAACAGATC.....................................................................................................................................................................................................................................192.000.00------------------1.00----------------------1.00-----------------------------------------------
..............................................................................................................................................GCCAAGAGAGTCTGTGGAACTGAA....................................................................................2412.00220.00--------------------------------2.00--------------------------------------------------------
..............................................................................................................................................GCCAAGAGAGTCTGTGGGAC........................................................................................2012.001.00----------------------------------------2.00------------------------------------------------
..........................................................................................................................................GACAGCCAAGAGAGTCTGTGGAACT.......................................................................................2512.002.00-1.00-------1.00-------------------------------------------------------------------------------
..............................................................................................................................................GCCAAGAGAGTCTGTGGAACTGAT....................................................................................2412.00220.00----------1.00--------------------1.00---------------------------------------------------------
....................................................................................................................................................................................CAGTTCCTCTCCTCTTGCAGA.................................................2112.005.001.00-----------------------------------------------------------------------------------1.00----
..TGGGGAGGTAGAACAGGCC.....................................................................................................................................................................................................................................192.000.00------------------------------------------1.00---------1.00------------------------------------
..............................................................................................................................................GCCAAGAGAGTCTGTGGAACTT......................................................................................2212.0020.002.00----------------------------------------------------------------------------------------
.............................................................................................................................................AGCCAAGAGAGTCTGTGGAACTT......................................................................................2312.0098.001.001.00---------------------------------------------------------------------------------------
................................................................................................................................................CAAGAGAGTCTGTGGAACTGAGT...................................................................................2312.008.00---1.00-------------------------------------------------------1.00-----------------------------
..............................................................................................................................................GCCAAGAGAGTCTGTGGAAA........................................................................................2012.009.001.00------1.00---------------------------------------------------------------------------------
................................................................................................................................................CAAGAGAGTCTGTGGAACTGAGA...................................................................................2312.008.001.00--1.00-------------------------------------------------------------------------------------
...................................................................................................................................................................................TCAGTTCCTCTCCTCTTGCA...................................................2012.002.00------------------------------2.00----------------------------------------------------------
..........................................................................................................................................GACAGCCAAGAGAGTCTGTGGAACTGAGT...................................................................................2912.003.00-----2.00-----------------------------------------------------------------------------------
..TGGGGAGGTAGAACAGGTA.....................................................................................................................................................................................................................................192.000.00----------------------------------------1.00-1.00----------------------------------------------
..............................................................................................................................................GCCAAGAGAGTCTGTGGAAATGA.....................................................................................2312.009.00-------1.00-----------------1.00---------------------------------------------------------------
...........................................................................................................................................ACAGCCAAGAGAGTCTGTGGAACA.......................................................................................2412.0010.00--------------------------2.00--------------------------------------------------------------
...............................................................................................................................................CCAAGAGAGTCTGTGGAAC........................................................................................1921.501.500.501.00---------------------------------------------------------------------------------------
...............................................................................................................................................CCAAGAGAGTCTGTGGAACTTA.....................................................................................2221.500.501.00---------------------------------------------------0.50------------------------------------
...................................................................................................................................................................................TCAGTTCCTCTCCTCTTGCAGA.................................................2211.005.00-----1.00-----------------------------------------------------------------------------------
..............................................................................................................................................GCCAAGAGAGTCTGTGGAACTGAAG...................................................................................2511.00220.00------1.00----------------------------------------------------------------------------------
.................................................................................................................................................AAGAGAGTCTGTGGAACTGA.....................................................................................2011.001.00--------------------------1.00--------------------------------------------------------------
...........................................................................................................................................ACAGCCAAGAGAGTCTGTGGAACTGAG....................................................................................2711.001.00----------1.00------------------------------------------------------------------------------
.............................................................................................................................................AGCCAAGAGAGTCTGTGGGACT.......................................................................................2211.001.00-------------------------------------1.00---------------------------------------------------
............................................................................................................................................................TGGAACTGAGGAAGCGAG............................................................................181.000.00-----------------------------------------1.00-----------------------------------------------
............................................................................................................................................CAGCCAAGAGAGTCTGTGGAAAC.......................................................................................2311.007.00----------------------------------------------------1.00------------------------------------
..................................................................................................................................................AGAGAGTCTGTGGAACTGAG....................................................................................2011.001.00--------1.00--------------------------------------------------------------------------------
.............................................................................................................................................AGCCAAGAGAGTCTGTGGACC........................................................................................2111.008.00------------------------------------------------------------------------1.00----------------
...........................................................................................................................................ACAGCCAAGAGAGTCTGTGGAA.........................................................................................2211.001.00-------------------------------------------1.00---------------------------------------------
..................................................................................................................................................................TGAGGAAGCAGATGGTATC.....................................................................191.000.00-------------------------------------------------------------------------1.00---------------
...............................................TGGGGCAACGGACTGAAG.........................................................................................................................................................................................181.000.00----------------------------------------------------------------------------------1.00------
............................................................................................................................................CAGCCAAGAGAGTCTGTGGAACTGAGT...................................................................................2711.005.00---1.00-------------------------------------------------------------------------------------
.............................................................................................................................................AGCCAAGAGAGTCTGTGGAACTGAAA...................................................................................2611.00109.00---------1.00-------------------------------------------------------------------------------
........................................................................................................................................AAGACAGCCAAGAGAGTCTGTGGAAC........................................................................................2611.001.00---1.00-------------------------------------------------------------------------------------
.................................................................................................................................................AAGAGAGTCTGTGGAACTGAGT...................................................................................2211.0011.00-----1.00-----------------------------------------------------------------------------------
..............................................................................................................................................GCCAAGAGAGTCTGTGG...........................................................................................1711.001.00------1.00----------------------------------------------------------------------------------
..............................................................................................................................................GCCAAGAGAGTCTGTGGA..........................................................................................1811.001.00-------------------------------1.00---------------------------------------------------------
..............................................................................................................................................GCCAAGAGAGTCTGTGGAACTGAAC...................................................................................2511.00220.00-------------------------------1.00---------------------------------------------------------
....................................................................................................................................................................................CAGTTCCTCTCCTCTTGCAT..................................................201.000.00-----------------------------1.00-----------------------------------------------------------
...........................................................................................................................................ACAGCCAAGAGAGTCTGTGTA..........................................................................................211.000.00---------------------------------------------------1.00-------------------------------------
.............................................................................................................................................AGCCAAGAGAGTCTGTGGATC........................................................................................2111.008.00----------------------------------1.00------------------------------------------------------
............................................................................................................................................CAGCCAAGAGAGTCTGTGGAAT........................................................................................2211.007.001.00----------------------------------------------------------------------------------------
..............................................................................................................................................GCCAAGAGAGTCTGTGGCGC........................................................................................2011.001.00------------------------------------------1.00----------------------------------------------
.......................................................................................................................................................GTCTGTGGAACTGAGGCA.................................................................................181.000.00----------------------------------------------------------------------------------------1.00
..............................................................................................................................................GCCAAGAGAGTCTGTGGCACT.......................................................................................2111.001.00----------------------------------1.00------------------------------------------------------
...................................................................................................................................................................................TCAGTTCCTCTCCTCTTGCAGT.................................................2211.005.00---------------------------1.00-------------------------------------------------------------
..................................................................................................................................................................TGAGGAAGCAGATGGTCT......................................................................181.000.00-------------------------------------------------------1.00---------------------------------
...........................................................................................................................................ACAGCCAAGAGAGTCTGTGGAACTGAGA...................................................................................2811.001.00---1.00-------------------------------------------------------------------------------------
..............................................................................................................................................GCCAAGAGAGTCTGTGGAACTGAC....................................................................................2411.00220.00----------------------------1.00------------------------------------------------------------
.............................................................................................................................................AGCCAAGAGAGTCTGTGGAACA.......................................................................................2211.0083.00-----------1.00-----------------------------------------------------------------------------
...............................................................................................................................................CCAAGAGAGTCTGTGGAACTGGG....................................................................................2311.0023.00----------------------1.00------------------------------------------------------------------
..TGGGGAGGTAGAACATATA.....................................................................................................................................................................................................................................191.000.00---------------------------------------1.00-------------------------------------------------
...........................................................................................................................................ACAGCCAAGAGAGTCTGT.............................................................................................1811.001.00---------------------------1.00-------------------------------------------------------------
..TGGGGAGGTAGAACAGTTC.....................................................................................................................................................................................................................................191.000.00----------------------------------------1.00------------------------------------------------
..TGGGGAGGTAGAACATATC.....................................................................................................................................................................................................................................191.000.00---------------------------------------1.00-------------------------------------------------
..............................................................................................................................................GCCAAGAGAGTCTGTGGAAT........................................................................................2011.009.00------------------1.00----------------------------------------------------------------------
....................................................................................................................................................................................CAGTTCCTCTCCTCTTGCGGT.................................................211.000.00--------1.00--------------------------------------------------------------------------------
...................................................................................................................................................................GAGGAAGCAGATGGAACTC....................................................................191.000.00---------------------------------------------1.00-------------------------------------------
............................................................................................................................................CAGCCAAGAGAGTCTGTGGAACTGT.....................................................................................2511.0040.00--------------------------------------------1.00--------------------------------------------
.............................................................................................................................................AGCCAAGAGAGTCTGTGGAAATGA.....................................................................................2411.004.00-------------------------------1.00---------------------------------------------------------
..................................................................................................................................................................TGAGGAAGCAGATGGTGGA.....................................................................191.000.00---------------------------------------1.00-------------------------------------------------
..............................................................................................................................................GCCAAGAGAGTCTGTGGTA.........................................................................................1911.001.00---------------------1.00-------------------------------------------------------------------
..................................................................................................................................................................TGAGGAAGCAGATGGGAA......................................................................181.000.00------------------1.00----------------------------------------------------------------------
....................................................................................................................................................................................CAGTTCCTCTCCTCTTGCAGTT................................................2211.005.00------------------------------------------------1.00----------------------------------------
..............................................................................................................................................GCCAAGAGAGTCTGTGGAACTAA.....................................................................................2311.0020.00-1.00---------------------------------------------------------------------------------------
.................................................................................................................................................AAGAGAGTCTGTGGAACTGAGA...................................................................................2211.0011.00-1.00---------------------------------------------------------------------------------------
............................................................................................................................................CAGCCAAGAGAGTCTGTGGGAC........................................................................................2211.002.00----------------------------------------------------1.00------------------------------------
..............................................................................................................................................GCCAAGAGAGTCTGTGGGA.........................................................................................1911.001.00---------------------1.00-------------------------------------------------------------------
...............................................................................................................................................CCAAGAGAGTCTGTGGAACTGTG....................................................................................2311.0023.00----------------------------------------------------------1.00------------------------------
.............................................................................................................................................AGCCAAGAGAGTCTGTGTAAC........................................................................................211.000.001.00----------------------------------------------------------------------------------------
...............................................................................................................................................CCAAGAGAGTCTGTGGAACTGCT....................................................................................2311.0023.00------------1.00----------------------------------------------------------------------------
............................................................................................................................................CAGCCAAGAGAGTCTGTGGGA.........................................................................................2111.002.00-------------------------------------1.00---------------------------------------------------
...........................................................................................................................................ACAGCCAAGAGAGTCTGTGGGACT.......................................................................................241.000.00----------------------------------------------------------1.00------------------------------
............................................................................................................................................CAGCCAAGAGAGTCTGTGGAACTGAGA...................................................................................2711.005.00---1.00-------------------------------------------------------------------------------------
...........................................................................................................................................ACAGCCAAGAGAGTCTGTAG...........................................................................................2011.001.00-------------------------------------1.00---------------------------------------------------
.............................................................................................................................................AGCCAAGAGAGTCTGTGGAACTC......................................................................................2311.0098.00------------1.00----------------------------------------------------------------------------
...........................................................................................................................................ACAGCCAAGAGAGTCTGTGGAACTGT.....................................................................................2611.007.00-------1.00---------------------------------------------------------------------------------
............................................................................................................................................CAGCCAAGAGAGTCTGTGGAAA........................................................................................2211.007.00---1.00-------------------------------------------------------------------------------------
............................................................................................................................................CAGCCAAGAGAGTCTGTGCAAC........................................................................................221.000.001.00----------------------------------------------------------------------------------------
.............................................................................................................................................AGCCAAGAGAGTCTGTGGAGCTG......................................................................................2311.008.001.00----------------------------------------------------------------------------------------
.............................................................................................................................................AGCCAAGAGAGTCTGTGGAACTGATA...................................................................................2611.00109.00--1.00--------------------------------------------------------------------------------------
.............................................................................................................................................AGCCAAGAGAGTCTGTGGAAA........................................................................................2111.004.00---1.00-------------------------------------------------------------------------------------
.............................................................................................................................................AGCCAAGAGAGTCTGTGGAAAT.......................................................................................2211.004.00-------1.00---------------------------------------------------------------------------------
...................................................................................................................................................................GAGGAAGCAGATGGACTG.....................................................................181.000.00---------------------------------------------------------------1.00-------------------------
..............................................................................................................................................GCCAAGAGAGTCTGTGGCA.........................................................................................1911.001.00---------------------1.00-------------------------------------------------------------------
.............................................................................................................................................AGCCAAGAGAGTCTGTGGAACTGAAAA..................................................................................2711.00109.00--1.00--------------------------------------------------------------------------------------
............................................................................................................................................CAGCCAAGAGAGTCTGTGGAACTT......................................................................................2411.0057.00----1.00------------------------------------------------------------------------------------
..................................................................................................................................................................TGAGGAAGCAGATGGCTG......................................................................181.000.00-----------------------------------------1.00-----------------------------------------------
..................................................................................................................................................AGAGAGTCTGTGGAACTGAGG...................................................................................2111.001.00----1.00------------------------------------------------------------------------------------
................................................................................................................................................CAAGAGAGTCTGTGGAACTG......................................................................................2011.001.00--------------1.00--------------------------------------------------------------------------
.............................................................................................................................................AGCCAAGAGAGTCTGTGG...........................................................................................1811.001.00------1.00----------------------------------------------------------------------------------
.............................................................................................................................................AGCCAAGAGAGTCTGTGGGAC........................................................................................2111.001.00---------------------1.00-------------------------------------------------------------------
..................................................................................................................................................................TGAGGAAGCAGATGGCATA.....................................................................191.000.00---------------------------------------------------------------1.00-------------------------
.............................................................................................................................................AGCCAAGAGAGTCTGTGGAACTTAG....................................................................................2511.0098.00-------1.00---------------------------------------------------------------------------------
.............................................................................................................................................AGCCAAGAGAGTCTGTGGTAC........................................................................................2111.001.00---------------------1.00-------------------------------------------------------------------
................................................................................................................................................CAAGAGAGTCTGTGGAAC........................................................................................1821.001.00---0.50--0.50----------------------------------------------------------------------------------
..TGGGGAGGTAGAACAGA.......................................................................................................................................................................................................................................171.000.00------------------------------------------1.00----------------------------------------------
...........................................................................................................................................ACAGCCAAGAGAGTCTGTGGAAA........................................................................................2311.001.00--------------------1.00--------------------------------------------------------------------
.................................................................................................................................................AAGAGAGTCTGTGGAACTGAGGT..................................................................................2311.003.00-----------1.00-----------------------------------------------------------------------------
..................................................................................................................................................................TGAGGAAGCAGATGGAAT......................................................................181.000.00--------------------------------------------------------------------------1.00--------------
................................................................................................................................................CAAGAGAGTCTGTGGAACT.......................................................................................1920.500.500.50----------------------------------------------------------------------------------------
.................................................................................................................................................AAGAGAGTCTGTGGAACT.......................................................................................1820.500.50----------0.50------------------------------------------------------------------------------
...............................................................................................................................................CCAAGAGAGTCTGTGGAAGTGA.....................................................................................2220.500.50--0.50--------------------------------------------------------------------------------------
.................................................................................................................................................AAGAGAGTCTGTGGAAC........................................................................................1720.500.50------0.50----------------------------------------------------------------------------------
...............................................................................................................................................CCAAGAGAGTCTGTGGAACT.......................................................................................2020.500.50-------------0.50---------------------------------------------------------------------------
...............................................................................................................................................CCAAGAGAGTCTGTGGAA.........................................................................................1820.500.50------------0.50----------------------------------------------------------------------------
...............................................................................................................................................CCAAGAGAGTCTGTGGAACTCAGG...................................................................................2420.500.50--0.50--------------------------------------------------------------------------------------
...............................................................................................................................................CCAAGAGAGTCTGTGGAAATGA.....................................................................................2220.500.50-------0.50---------------------------------------------------------------------------------
..................................................................................................................................................AGAGAGTCTGTGGAACT.......................................................................................1740.250.25-----------0.25-----------------------------------------------------------------------------

Antisense strand
GTTGGGGAGGTAGAACACACCCTACCTATGAATTTTAGCATGGGCTGTGGGGCAACGGACTGTTTATTGGCTTTGTAGCCAGGAGCTGAGTTTGGATTTAAAGAAAAGCGTAACTGGGGCAGAGTTAGTGTTGGGAAAGACAGCCAAGAGAGTCTGTGGAACTGAGGAAGCAGATGGACTCAGTTCCTCTCCTCTTGCAGGTGTCAACAGGAGCCTATAAGCGCCAAGTACATGAAGTTCCCCTGGGGAA
..............................................................................................................................................((.(((((((.....(((((((((............))))))))).))).))))))....................................................
.........................................................................................................................................138...........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR553582(SRX182788)
source: Brain. (Brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR206940(GSM723281)
other. (brain)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR206939(GSM723280)
other. (brain)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR206941(GSM723282)
other. (brain)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR206942(GSM723283)
other. (brain)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR306538(GSM750581)
19-24nt. (ago2 brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		mjTestesWT3()
Testes Data. (testes)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		mjLiverWT3()
Liver Data. (liver)		SRR095853(SRX039174)
sequencing of miRNA from wild type and diseas. (heart)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR553586(SRX182792)
source: Testis. (testes)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR095855BC1(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR306526(GSM750569)
19-24nt. (ago2 brain)		GSM261959(GSM261959)
oocytesmallRNA-19to30. (oocyte)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR345206(SRX097267)
source: size fractionated RNA from mouse hipp. (brain)		SRR073954(GSM629280)
total RNA. (blood)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR306528(GSM750571)
19-24nt. (ago2 brain)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR037929(GSM510467)
e7p5_rep3. (embryo)
....................CCTACCTATGAATTTTA..................................................................................................................................................................................................................... 1721.501.50----------------------------------------------------------------1.50------------------------
.....................................................................................................................................................................................AGTTCCTCTCCTCTTAA.................................................... 171.000.00------1.00----------------------------------------------------------------------------------
...................................................................................................................................................GAGAGTCTGTGGAACTGTTT................................................................................... 201.000.00------------------1.00----------------------------------------------------------------------
.......................................................................................................................................................................................TTCCTCTCCTCTTGCAAAGC............................................... 201.000.00----------------------------------------------------------------------1.00------------------
..........................................................................................................................................................................................................GTCAACAGGAGCCTATAA.............................. 1811.001.00-----------------------------------------------------1.00-----------------------------------
.........................................GGGCTGTGGGGCAACGGACTGTTT......................................................................................................................................................................................... 2411.001.00---------------------------------------------1.00-------------------------------------------