ID: uc007hyc.5
GENE: Ddx56(8)
chr11:6163987-6164176-


(1)
AGO1.ip 		(8)
AGO2.ip 		(1)
AGO3.ip 		(5)
B-CELL 		(20)
BRAIN 		(1)
CELL-LINE 		(3)
DGCR8.mut 		(11)
EMBRYO 		(12)
ESC 		(2)
FIBROBLAST 		(2)
KIDNEY 		(6)
LIVER 		(3)
LYMPH 		(9)
OTHER 		(4)
OTHER.mut 		(1)
OVARY 		(5)
PIWI.ip 		(3)
SKIN 		(3)
SPLEEN 		(18)
TESTES 		(3)
THYMUS 		(2)
TOTAL-RNA 		(1)
UTERUS

Sense strand
AATTTTGACCTTCCTCCCACCGCAGAGGCTTATGTCCATCGAGCTGGCAGGTAGGAGGATGGGGCGTGGGGTGAGCTGGGGCGTGCGGAAGGACAGATCCTGTGGGCTAGTGGTACACGCTTGATCTTCTCCCTCTGCAGGACAGCTCGAGCCAACAACCCAGGCATAGTTCTGACCTTTGTGTTGCCCG
...................................................................................((((((.(((.(((((..(((.((.....))...)))..)))))..))).))))))...................................................
.............................................................................78............................................................140................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		mjTestesWT3()
Testes Data. (testes)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR073955(GSM629281)
total RNA. (blood)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR206942(GSM723283)
other. (brain)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR059765(GSM562827)
DN3_control. (thymus)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR206939(GSM723280)
other. (brain)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		mjTestesWT2()
Testes Data. (testes)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR014229(GSM319953)
10 dpp MILI. (mili testes)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR206941(GSM723282)
other. (brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		GSM475281(GSM475281)
total RNA. (testes)		RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR073954(GSM629280)
total RNA. (blood)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR065046(SRR065046)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR014234(GSM319958)
Ovary total. (ovary)		mjTestesWT4()
Testes Data. (testes)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR037903(GSM510439)
testes_rep4. (testes)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (salivary gland)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		mjLiverWT3()
Liver Data. (liver)		mjTestesKO7()
Testes Data. (Zcchc11 testes)
.......................................................................................................................CTTGATCTTCTCCCTCTGCAGT.................................................22131.0026.002.009.00----2.001.001.00--1.001.002.00-1.00--1.00-----------1.00-----1.00-1.00----1.00------------1.00-1.00------------1.00----1.00-------1.00---------------1.00-
.......................................................................................................................CTTGATCTTCTCCCTCTGCAG..................................................21126.0026.0018.00--------2.00-1.00---1.00---------2.00----------------------1.00--1.00--------------------------------------------------
........................................................................................................................TTGATCTTCTCCCTCTGCAGTTT...............................................2319.000.006.00--1.00---3.00-1.00-------------1.00------1.00-------------1.002.001.00-------------------1.00-------------------------1.00---------
..................................................................................GTGCGGAAGGACAGATCCTGTG......................................................................................22114.0014.00---3.00-------1.00---1.00-1.001.00---1.00-1.00-------2.00----------1.00-------------------------1.00-----------------1.00--------------
.................................................................................CGTGCGGAAGGACAGATCCTGTGT.....................................................................................24114.001.00-11.00-------------------3.00--------------------------------------------------------------------------------
..................................................................................GTGCGGAAGGACAGATCCTGTGA.....................................................................................2317.0014.00-----------------2.00----2.00-----------1.00---------------------------------------------------1.00----1.00----------
..................................................GTAGGAGGATGGGGCGTGGGGTGAGCTGGGGCGTGCGGAAGGACAGATCCTGTGGGCTAGTGGTACACGCTTGATCTTCTCCCTCTGCAG..................................................9016.006.00--6.00---------------------------------------------------------------------------------------------------
.................................GTCCATCGAGCTGGCAG............................................................................................................................................1716.006.00--------1.00-1.00--------3.00------------------------------------------1.00---------------------------------------
..................................................................................GTGCGGAAGGACAGATCCTGT.......................................................................................2115.005.00-----------------------------1.00-----------------2.00----1.00----------------------------------------------1.00--
.......................................................................................................................CTTGATCTTCTCCCTCTGCAGA.................................................2215.0026.002.00--2.00--1.00-----------------------------------------------------------------------------------------------
...................................................................................TGCGGAAGGACAGATCCTGTGT.....................................................................................2215.003.001.00--------1.00-----------------------1.00-1.00--1.00---------------------------------------------------------------
........................................................................................................................TTGATCTTCTCCCTCTGCAGT.................................................214.000.00-4.00----------------------------------------------------------------------------------------------------
.....................................................................................................................CGCTTGATCTTCTCCCTCTGCAGT.................................................2414.002.002.00-----1.00----------------------------------1.00------------------------------------------------------------
........................................................................................................................TTGATCTTCTCCCTCTGCAGAAA...............................................234.000.001.00----------1.00------------1.00---------------------1.00-------------------------------------------------------
........................................................................................................................TTGATCTTCTCCCTCTGCAGA.................................................214.000.002.00--------------1.00--------1.00-----------------------------------------------------------------------------
..................................................GTAGGAGGATGGGGCGTGGGGTGAGCTGGGGCGTGCGGAAGGACAGATCCTGTGGGCTAGTGGTACA.........................................................................6714.004.00--4.00---------------------------------------------------------------------------------------------------
...................................................................................TGCGGAAGGACAGATCCTGTG......................................................................................2113.003.00----------2.00-------1.00-----------------------------------------------------------------------------------
..................................................................................GTGCGGAAGGACAGATCCT.........................................................................................1913.003.00----------------------------1.00-----------2.00-------------------------------------------------------------
........................................................................................................................TTGATCTTCTCCCTCTGCAGTTC...............................................233.000.00-3.00----------------------------------------------------------------------------------------------------
.......................................................................................................................CTTGATCTTCTCCCTCTGCAGTA................................................2313.0026.00-------------1.00-----------------------2.00----------------------------------------------------------------
.........................................................................................................................................CAGGACAGCTCGAGCCAACAACCCAGGC.........................2812.002.00--------------1.00----------------------------------------------------------1.00----------------------------
........................................................................GAGCTGGGGCGTGCGGAAGGACA...............................................................................................2312.002.00---------------------------------------2.00--------------------------------------------------------------
........................................................................................................................TTGATCTTCTCCCTCTGCAGATT...............................................232.000.00----------------------------------------------------------------------1.00-1.00-----------------------------
........................................................................................................................TTGATCTTCTCCCTCTGCAGAAT...............................................232.000.001.00-----------------------------------1.00-----------------------------------------------------------------
.....................................................................................................................CGCTTGATCTTCTCCCTCTGCAG..................................................2312.002.001.00------------------------1.00----------------------------------------------------------------------------
..................................................................................GTGCGGAAGGACAGATCCTGTGT.....................................................................................2312.0014.00------------------------------------------------------1.00-------------------1.00---------------------------
.......................................................................................................................CTTGATCTTCTCCCTCTGCAGC.................................................2212.0026.001.00---------------------------------------------------------------------------------------1.00-------------
........................................................................................................................TTGATCTTCTCCCTCTGCAGTAT...............................................232.000.00-----2.00------------------------------------------------------------------------------------------------
..............TCCCACCGCAGAGGCTTATGTCCATCG.....................................................................................................................................................2712.002.00--------------1.00--------------------------------------------------------------------1.00------------------
......................................................................................................................GCTTGATCTTCTCCCTCTGCAGC.................................................232.000.002.00-----------------------------------------------------------------------------------------------------
.......................................................................................................................CTTGATCTTCTCCCTCTGCAGTT................................................2312.0026.00------1.00--------------------------------------------------1.00--------------------------------------------
.................................................................................CGTGCGGAAGGACAGATCCT.........................................................................................2012.002.00---------------------------------1.00---------------------------------1.00----------------------------------
...................................................................................TGCGGAAGGACAGATCCTGT.......................................................................................2012.002.00---1.00-------------1.00------------------------------------------------------------------------------------
......................................................................................................................................................................TAGTTCTGACCTTTGTGTTGCCCGCTGA281.000.00-------------------------------1.00----------------------------------------------------------------------
......................................................................................................................................................................TAGTTCTGACCTTTGTGTTGCCCGT251.000.00-------------------------------------------------------------------------------1.00----------------------
...................................................................................................................................CCTCTGCAGGACAGCTGGCC.......................................201.000.00---------------------------------------------------------------------------------------------1.00--------
.....................................................................................................................CGCTTGATCTTCTCCCTCTGCAGA.................................................2411.002.00--------------------------------------------------1.00---------------------------------------------------
...................................................................................................................................................CGAGCCAACAACCCAGGCATAGTTCTGACCT............3111.001.00---------------------------------------------------------------------------1.00--------------------------
.........................................................................................................................TGATCTTCTCCCTCTGCAGAA................................................211.000.001.00-----------------------------------------------------------------------------------------------------
................................TGTCCATCGAGCTGGCAG............................................................................................................................................1811.001.00------------------------------------------------------------------------------1.00-----------------------
..................................................GTAGGAGGATGGGGCGTGGGGTGAGCTGGGGCGTGCGGAAGGACAGATCCTGTGGGCT..................................................................................5811.001.00--1.00---------------------------------------------------------------------------------------------------
.....TGACCTTCCTCCCACCGCAG.....................................................................................................................................................................2011.001.00-------------------------------------------------------------------------------------1.00----------------
........................................................................................................................TTGATCTTCTCCCTCTGCAGTA................................................221.000.00-----------------------------------------------------------------------------------------------1.00------
.......................................................................................GAAGGACAGATCCTGTGT.....................................................................................181.000.00-1.00----------------------------------------------------------------------------------------------------
...................................................TAGGAGGATGGGGCGTGGGGTGAGCT.................................................................................................................2611.001.00----------------------------------------------------------------------------------------------1.00-------
.....................................................................................................GTGGGCTAGTGGTACACGC......................................................................1911.001.00-------------------------------------------------------1.00----------------------------------------------
............................................................................................................................................................AACCCAGGCATAGTTCTGACCTTTT.........251.000.00----1.00-------------------------------------------------------------------------------------------------
............................................................................TGGGGCGTGCGGAAGCG.................................................................................................171.000.00--------------------1.00---------------------------------------------------------------------------------
......................................................................................................................GCTTGATCTTCTCCCTCTGCAGA.................................................231.000.00------------------------------------------------1.00-----------------------------------------------------
..................................................................................GTGCGGAAGGACAGATCCTGTGGGC...................................................................................2511.001.00---1.00--------------------------------------------------------------------------------------------------
.....TGACCTTCCTCCCACCGCAGAGGCTT...............................................................................................................................................................2611.001.00--------------------------------------------------------------------------------1.00---------------------
...................................................................................TGCGGAAGGACAGATCCTGTGTT....................................................................................2311.003.00--------------------------------------------------------------------1.00---------------------------------
..................................................................................................................................................................GGCATAGTTCTGACCTTT..........1811.001.00-----------------------------------------1.00------------------------------------------------------------
...................................................................................TGCGGAAGGACAGATCCT.........................................................................................1811.001.00----------------------------1.00-------------------------------------------------------------------------
......................................................................................GGAAGGACAGATCCTGTGA.....................................................................................191.000.001.00-----------------------------------------------------------------------------------------------------
......GACCTTCCTCCCACCGCAGAGGCTTATGTC..........................................................................................................................................................3011.001.00------------1.00-----------------------------------------------------------------------------------------
.................................................................................................................................................................AGGCATAGTTCTGACC.............1611.001.00-----------------------------------------------------------------------------------------1.00------------
........................................................................................................................TTGATCTTCTCCCTCTGCAGTAG...............................................231.000.001.00-----------------------------------------------------------------------------------------------------
........................GAGGCTTATGTCCATCGAGCTGGCAG............................................................................................................................................2611.001.00---------------------------1.00--------------------------------------------------------------------------
...................................................................................TGCGGAAGGACAGATCCTG........................................................................................1911.001.00-----------------------1.00------------------------------------------------------------------------------
..........................................................................................................................................AGGACAGCTCGAGCCAACAAC...............................2111.001.00----1.00-------------------------------------------------------------------------------------------------
.........CTTCCTCCCACCGCAGAGGCT................................................................................................................................................................2111.001.00------------1.00-----------------------------------------------------------------------------------------
......................................................................................................................................................................TAGTTCTGACCTTTGTGTTGCC..2211.001.00----1.00-------------------------------------------------------------------------------------------------
......................................................................................................................GCTTGATCTTCTCCCTCTGCAGT.................................................231.000.00----------------------------------1.00-------------------------------------------------------------------
...................................................................................................CTGTGGGCTAGTGGTTAGG........................................................................191.000.00------------------------------------------1.00-----------------------------------------------------------
..........................................................................................................................................AGGACAGCTCGAGCCAAC..................................1811.001.00-----1.00------------------------------------------------------------------------------------------------
..................................................................................GTGCGGAAGGACAGATCCTG........................................................................................2011.001.00-------------------------------------------------1.00----------------------------------------------------
......GACCTTCCTCCCACCGCAGAGGCTT...............................................................................................................................................................2511.001.00-----1.00------------------------------------------------------------------------------------------------
......................CAGAGGCTTATGTCCATCG.....................................................................................................................................................1911.001.00----1.00-------------------------------------------------------------------------------------------------
.....TGACCTTCCTCCCACCGCAGAGGCTTATGT...........................................................................................................................................................3011.001.00-------------------------------1.00----------------------------------------------------------------------
.....................................................................................................................................................AGCCAACAACCCAGGCATAGTTCTGACC.............2811.001.00--------------1.00---------------------------------------------------------------------------------------
..................................................................................................................ACACGCTTGATCTTCTCCCTCTG.....................................................2311.001.00------1.00-----------------------------------------------------------------------------------------------
..............TCCCACCGCAGAGGCTTATGTCCATCGA....................................................................................................................................................2811.001.00----1.00-------------------------------------------------------------------------------------------------
.....................................................................................................................CGCTTGATCTTCTCCCTCTGCAGTTT...............................................2611.002.001.00-----------------------------------------------------------------------------------------------------
...........TCCTCCCACCGCAGAGGCTTATGTCCATC......................................................................................................................................................2911.001.00----1.00-------------------------------------------------------------------------------------------------
..................................................................................GTGCGGAAGGACAGATCCTGTGAA....................................................................................2411.0014.00------------1.00-----------------------------------------------------------------------------------------
...................CCGCAGAGGCTTATGTCCATCGAGCT.................................................................................................................................................2611.001.00-------------------------------------------------------------1.00----------------------------------------
...............CCCACCGCAGAGGCTTATG............................................................................................................................................................1911.001.00------------------------------------------1.00-----------------------------------------------------------
.........................................................................................................................TGATCTTCTCCCTCTGCAGAGT...............................................221.000.00---------------------------------------------------------------------------------1.00--------------------
..........................................................................................................................................AGGACAGCTCGAGCCAACAACCCAGGCA........................2811.001.00---------------------------1.00--------------------------------------------------------------------------
................................................AGGTAGGAGGATGGGGCT............................................................................................................................181.000.00-------------------------------------------------------------------------------------------------1.00----
...................................................................................TGCGGAAGGACAGATCCCGTG......................................................................................211.000.00--------1.00---------------------------------------------------------------------------------------------
..............TCCCACCGCAGAGGCTTATGTCCATCGAG...................................................................................................................................................2911.001.00--------------1.00---------------------------------------------------------------------------------------
....................................................................................................TGTGGGCTAGTGGTATGA........................................................................181.000.00-----------------------------------------------------1.00------------------------------------------------
...................................................................................TGCGGAAGGACAGATCCTGTGA.....................................................................................2211.003.00--------1.00---------------------------------------------------------------------------------------------
.......................................................................................................................CTTGATCTTCTCCCTCTGTAGT.................................................221.000.00-------1.00----------------------------------------------------------------------------------------------
.................................GTCCATCGAGCTGGCAGGTAGGAGG....................................................................................................................................2511.001.00-----------------------------1.00------------------------------------------------------------------------
..................................TCCATCGAGCTGGCAGGACA........................................................................................................................................201.000.001.00-----------------------------------------------------------------------------------------------------
................................................AGGTAGGAGGATGGGGGCG...........................................................................................................................191.000.00----------------------------------------------------------------1.00-------------------------------------
.................................................................................CGTGCGGAAGGACAGATCCTGTG......................................................................................2311.001.00------------------------------------------------------------------------------------------------1.00-----
.................................................................................CGTGCGGAAGGACAGATCCTGT.......................................................................................2211.001.00-----1.00------------------------------------------------------------------------------------------------
..............TCCCACCGCAGAGGCTTATGTCCATC......................................................................................................................................................2611.001.00----1.00-------------------------------------------------------------------------------------------------
...........TCCTCCCACCGCAGAGGCTTA..............................................................................................................................................................2111.001.00-----------------------------------------------------------1.00------------------------------------------
.............................................................................................................................................ACAGCTCGAGCCAACAACCCAGGCATAGTT...................3011.001.00-----------------------------------------------------------------1.00------------------------------------
..................................................................................................CCTGTGGGCTAGTGGTTAG.........................................................................191.000.00------------------------------------------------------------1.00-----------------------------------------
.......................................................AGGATGGGGCGTGGGCATC....................................................................................................................191.000.00--------------------1.00---------------------------------------------------------------------------------
....................................................................................................................................................GAGCCAACAACCCAGAGCA.......................191.000.00-----------------------1.00------------------------------------------------------------------------------
..................................................................................................CCTGTGGGCTAGTGGTTAGG........................................................................201.000.00-----------------------------------1.00------------------------------------------------------------------
.......ACCTTCCTCCCACCGCAGAGGCTT...............................................................................................................................................................2411.001.00------------------------------------------------------------------------------------------1.00-----------
..................................................................................................CCTGTGGGCTAGTGGTTA..........................................................................181.000.00--------------------------------------------------------------------------------------------------1.00---
.......................................CGAGCTGGCAGGTAGGA......................................................................................................................................1711.001.00----------1.00-------------------------------------------------------------------------------------------
........................................................................................................................TTGATCTTCTCCCTCTGCAGTTTT..............................................241.000.001.00-----------------------------------------------------------------------------------------------------
.......................................................................................................................CTTGATCTTCTCCCTCTGCAGTAT...............................................2411.0026.00------------------1.00-----------------------------------------------------------------------------------
..........................................................................................................................................AGGACAGCTCGAGCCA....................................1620.500.50-------------------------------------------------0.50----------------------------------------------------

Antisense strand
AATTTTGACCTTCCTCCCACCGCAGAGGCTTATGTCCATCGAGCTGGCAGGTAGGAGGATGGGGCGTGGGGTGAGCTGGGGCGTGCGGAAGGACAGATCCTGTGGGCTAGTGGTACACGCTTGATCTTCTCCCTCTGCAGGACAGCTCGAGCCAACAACCCAGGCATAGTTCTGACCTTTGTGTTGCCCG
...................................................................................((((((.(((.(((((..(((.((.....))...)))..)))))..))).))))))...................................................
.............................................................................78............................................................140................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		mjTestesWT3()
Testes Data. (testes)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR073955(GSM629281)
total RNA. (blood)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR206942(GSM723283)
other. (brain)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR059765(GSM562827)
DN3_control. (thymus)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR206939(GSM723280)
other. (brain)		SRR037925(GSM510463)
e9p5_rep3. (embryo)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		mjTestesWT2()
Testes Data. (testes)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR014229(GSM319953)
10 dpp MILI. (mili testes)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR206941(GSM723282)
other. (brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		GSM475281(GSM475281)
total RNA. (testes)		RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR073954(GSM629280)
total RNA. (blood)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR065046(SRR065046)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR014234(GSM319958)
Ovary total. (ovary)		mjTestesWT4()
Testes Data. (testes)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR037903(GSM510439)
testes_rep4. (testes)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (salivary gland)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		mjLiverWT3()
Liver Data. (liver)		mjTestesKO7()
Testes Data. (Zcchc11 testes)
..............................................................................................................................................................CCCAGGCATAGTTCTCAGG............. 193.000.00----------------1.00----------------------------------------------1.00------------------1.00-------------------
..............................................................................................................................................................CCCAGGCATAGTTCTGACAG............ 203.000.00----------------3.00-------------------------------------------------------------------------------------
...........................................................................................................................................................CAACCCAGGCATAGTTCGGC............... 202.000.00--------------------------1.00-----------------1.00---------------------------------------------------------
..............................................................................................................................................................CCCAGGCATAGTTCTGC............... 171.000.00--------------------------1.00---------------------------------------------------------------------------
.ATTTTGACCTTCCTCGGCT.......................................................................................................................................................................... 191.000.00---1.00--------------------------------------------------------------------------------------------------
....................................................................................GCGGAAGGACAGATCCTG........................................................................................ 181.000.00-----1.00------------------------------------------------------------------------------------------------
......................................................................................................................................................GCCAACAACCCAGGCATAGTTCTGACCTTTG......... 3111.001.00-----------------------------------------------------------------------------1.00------------------------
.........CTTCCTCCCACCGCATGTG.................................................................................................................................................................. 191.000.00--------------------1.00---------------------------------------------------------------------------------
..................................................................................................................................................TCGAGCCAACAACCCAGG.......................... 1811.001.00-------------1.00----------------------------------------------------------------------------------------
.............................................................................................................................................................ACCCAGGCATAGTTC.................. 1580.750.75--------------------------0.50----------------------0.25----------------------------------------------------
.............................................................................................................................................................ACCCAGGCATAGTTCAGG............... 180.120.00-----------------------------------------------------------------------------------------------------0.12