ID: uc007ffx.11
GENE: X99384(8)
chr10:60809836-60810220-


(2)
AGO2.ip 		(1)
B-CELL 		(14)
BRAIN 		(1)
DGCR8.mut 		(6)
EMBRYO 		(9)
ESC 		(2)
HEART 		(3)
LIVER 		(1)
LUNG 		(9)
OTHER 		(10)
OTHER.mut 		(1)
PIWI.ip 		(1)
SPLEEN 		(16)
TESTES 		(1)
TOTAL-RNA

Sense strand
CTGGGAACCCTCGTCATGTTCCACCACAGTAGGACCACCTCCCAGCTAGAGTGAGTGGTCGGGAGGTCCCGCCAGCAGAAGGGTTGGAAGGACAGGAAGTAGAGAGGGTGAAGCTGCCTCTGGGGTGATGGGATCATATCCAGAGGACAGAGCATCTTTGCATCATTTGCCACAGATTGGTTTGGTGTGCTGGAGAGAGGCCACTGGACCCTTCTGGGTCTGGTCTCCATTTCCCCAGTAGAATTCAGAAGTGATTTGATGCCTCCCAGTGGCTGATGGGTGGCAACGGGCTGTGTTGCGGTCTCTGATTACACTCCCGATTCTCACTTTATCAGGGCAGCCTCCCCGTTGGCCAAACCCCTGCCCATGGAGCAGTTTCAGGTGA
................................................................................................................................................................................................................................................................................(((((((((((.((((((..((((..(((...)))...)))).)))).)).)))))).)))))..................................................
............................................................................................................................................................................................................................................................................269...............................................................335................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		mjTestesWT3()
Testes Data. (testes)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)		SRR206940(GSM723281)
other. (brain)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		GSM361394(GSM361394)
CGNP_P6_wt_rep1. (brain)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR095853(SRX039174)
sequencing of miRNA from wild type and diseas. (heart)		SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR553584(SRX182790)
source: Heart. (Heart)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM361399(GSM361399)
CGNP_P6_p53--_Ink4c--_rep2. (brain)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)
.................................................................................................................................................................................................................................................................................TGATGGGTGGCAACGGGCTGTGT.........................................................................................23158.0058.008.005.005.0010.004.00---1.00-2.003.00-1.00-1.003.001.003.001.00-2.00-1.00-------1.00--1.00-----1.00----1.00-1.00-----1.00------1.00--
.................................................................................................................................................................................................................................................................................TGATGGGTGGCAACGGGCTGTGA.........................................................................................2319.008.00-1.001.00-1.00---1.00-1.00------------1.00-1.00-----1.00--------------------1.00----------
.................................................................................................................................................................................................................................................................................TGATGGGTGGCAACGGGCTGTG..........................................................................................2218.008.003.00---1.00-------------------2.00--------2.00-----------------------------
.................................................................................................................................................................................................................................................................................TGATGGGTGGCAACGGGCTGTGTAAT......................................................................................2617.0058.001.005.00-----1.00-------------------------------------------------------
.................................................................................................................................................................................................................................................................................TGATGGGTGGCAACGGGCTGTGTT........................................................................................2416.006.001.00-1.00----------1.00-1.00-----------1.00------1.00----------------------------
................................................................................................................................................................................................................................................................................CTGATGGGTGGCAACGGGCTGTGT.........................................................................................2416.006.002.00-1.001.00---------------1.00-------1.00-----------------------------------
.................................................................................................................................................................................................................................................................................TGATGGGTGGCAACGGGCTGTGATT.......................................................................................2515.008.00----1.00----4.00-----------------------------------------------------
.................................................................................................................................................................................................................................................................................TGATGGGTGGCAACGGGCTGTAT.........................................................................................2314.002.00-3.00-----------------------1.00-------------------------------------
........................................................................................................................................................................................................................................................................................................................ACTCCCGATTCTCACTTTATCAGT.................................................244.000.00--------------1.00--------------1.00-------------------1.001.00------------
.................................................................................................................................................................................................................................................................................TGATGGGTGGCAACGGGCTGTGTTT.......................................................................................2514.006.00-------1.00-----1.00----------------------------1.00----------------1.00---
.................................................................................................................................................................................................................................................................................TGATGGGTGGCAACGGGCTGTGTAT.......................................................................................2513.0058.00--1.00--1.00------------------------------------------------1.00--------
.................................................................................................................................................................................................................................................................................TGATGGGTGGCAACGGGCTGTGTAA.......................................................................................2513.0058.00-----1.00-2.00-------------------------------------------------------
.................................................................................................................................................................................................................................................................................TGATGGGTGGCAACGGGCTGTAA.........................................................................................2312.002.001.00---------1.00----------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................CTCCCGATTCTCACTTTATCAG..................................................2212.002.00------------2.00--------------------------------------------------
.......................................TCCCAGCTAGAGTGAGTGGTCGGGAGGTCCCGCCAGCAGAAGGGTTGGAAGGACAGGAAGTAGAG.........................................................................................................................................................................................................................................................................................6512.002.00--------------------------2.00------------------------------------
.............................................................................................AGGAAGTAGAGAGGGATGT.................................................................................................................................................................................................................................................................................192.000.00-2.00-------------------------------------------------------------
.................................................................................................................................................................................................................................................................................TGATGGGTGGCAACGGGCTGT...........................................................................................2112.002.001.00-----------------------------------1.00--------------------------
.............................................................................................................................................................................................................................................................................TGGCTGATGGGTGGCAACGGGCTGT...........................................................................................2512.002.00-----------------2.00---------------------------------------------
............................................................................................................................................................................................................................................................................................................................CCGATTCTCACTTTATCAG..................................................1911.001.00------------1.00--------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................CACTCCCGATTCTCACTTTATCA...................................................2311.001.00-----------------------------------------1.00---------------------
................................................................................................................................................................................................................................CTCCATTTCCCCAGTCGGA..............................................................................................................................................191.000.00------1.00--------------------------------------------------------
.........................................................................................................................................................................................TGTGCTGGAGAGAGGTTGA.....................................................................................................................................................................................191.000.00-------------------------------------------1.00-------------------
.........................................................................................................................................................................................TGTGCTGGAGAGAGGTTGT.....................................................................................................................................................................................191.000.00--------------------1.00------------------------------------------
................................................................................................................................................................................................................................................................................CTGATGGGTGGCAACGGGCTGTGG.........................................................................................2411.001.00--------1.00------------------------------------------------------
...............ATGTTCCACCACAGTCGGC...............................................................................................................................................................................................................................................................................................................................................................191.000.00------1.00--------------------------------------------------------
................................................................................................................................................................................................................................................................................CTGATGGGTGGCAACGGGCTGGGT.........................................................................................241.000.00--1.00------------------------------------------------------------
...........................AGTAGGACCACCTCCCAGCT..................................................................................................................................................................................................................................................................................................................................................2011.001.00-----------1.00---------------------------------------------------
.................................................................................................................................................................................................................................................................................TGATGGGTGGCAACGGGCTGTGTTA.......................................................................................2511.006.00-----1.00---------------------------------------------------------
....................................................................................................................................................................................................................................................................................TGGGTGGCAACGGGCTGTGTTG.......................................................................................2211.001.00--1.00------------------------------------------------------------
................................................................................................................................................................................................................................................................................CTGATGGGTGGCAACGGGCTGTGTAAT......................................................................................2711.006.001.00--------------------------------------------------------------
......................................................................................................................................................................................................................................................................................GGTGGCAACGGGCTG............................................................................................1511.001.00---------------------------------------------------1.00-----------
..................................................................................................................................................................................................................................................................................GATGGGTGGCAACGGGCTGTGA.........................................................................................221.000.00---------------1.00-----------------------------------------------
...............................................................................................................................................................................................................................................AGAATTCAGAAGTGATTT................................................................................................................................1811.001.00--------------------------------------------------------1.00------
..................................................GTGAGTGGTCGGGAGGTCCCGCCATT.....................................................................................................................................................................................................................................................................................................................261.000.00-------------------------------------1.00-------------------------
..........................CAGTAGGACCACCTCCCAGCTAGAGGCA...........................................................................................................................................................................................................................................................................................................................................281.000.00--------------------------------1.00------------------------------
................................................................................................................................................................................................................................................................................CTGATGGGTGGCAACGGGCTGT...........................................................................................2211.001.00----------------------------1.00----------------------------------
.................................................................................................................................................................................TGGTTTGGTGTGCTGTGC..............................................................................................................................................................................................181.000.00----------------------------------------------1.00----------------
.............................TAGGACCACCTCCCAGCTAGAGGCA...........................................................................................................................................................................................................................................................................................................................................251.000.00--------------1.00------------------------------------------------
.................................................................................................................................................................................................................................................................................TGATGGGTGGCAACGGGCTGTGAAT.......................................................................................2511.008.00-----1.00---------------------------------------------------------
.................................................................................................................................................................................................................................................................................TGATGGGTGGCAACGGGCTGTGTATA......................................................................................2611.0058.00--------1.00------------------------------------------------------
..................................................................................................................................................................................................................................................................................GATGGGTGGCAACGGGCTGTGT.........................................................................................2211.001.00----------------------------1.00----------------------------------
.................................................................................................................................................................................................................................................................................TGATGGGTGGCAACGGGCTGTAGA........................................................................................2411.002.00----------------------1.00----------------------------------------
.........................ACAGTAGGACCACCTCCCAGCTAGAGG.............................................................................................................................................................................................................................................................................................................................................271.000.00-------------------1.00-------------------------------------------
........................................................................................................................................................................................................................................................................................................................ACTCCCGATTCTCACTTTATCAGA.................................................241.000.00---------------------------------------1.00-----------------------
......................................................................................................................................................................TTGCCACAGATTGGTTGG.........................................................................................................................................................................................................181.000.00------1.00--------------------------------------------------------
.................................................................................................................................................................................................................................................................................TGATGGGTGGCAACGGGCTGTGTTAT......................................................................................2611.006.00----------------------------------------------------------1.00----
......................ACCACAGTAGGACCACCTCCCAGCTA.................................................................................................................................................................................................................................................................................................................................................2611.001.00--------------------------------1.00------------------------------
.......................................................................................AAGGACAGGAAGTAGCTG........................................................................................................................................................................................................................................................................................181.000.00-------------------------------------------------------1.00-------
........................................................................................................AGGGTGAAGCTGCCTCCA.......................................................................................................................................................................................................................................................................181.000.00--------------------------------------------1.00------------------
................................................................................................................................................................................................................................................................................CTGATGGGTGGCAACGGGCTGTG..........................................................................................2311.001.001.00--------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................CCGTTGGCCAAACCC.........................1511.001.00--------------1.00------------------------------------------------
.....................................................AGTGGTCGGGAGGT..............................................................................................................................................................................................................................................................................................................................1450.200.20--------------------0.20------------------------------------------
......................................................................................GAAGGACAGGAAGTAGAG.........................................................................................................................................................................................................................................................................................1860.170.17-------------------------------------------------------------0.17-

Antisense strand
CTGGGAACCCTCGTCATGTTCCACCACAGTAGGACCACCTCCCAGCTAGAGTGAGTGGTCGGGAGGTCCCGCCAGCAGAAGGGTTGGAAGGACAGGAAGTAGAGAGGGTGAAGCTGCCTCTGGGGTGATGGGATCATATCCAGAGGACAGAGCATCTTTGCATCATTTGCCACAGATTGGTTTGGTGTGCTGGAGAGAGGCCACTGGACCCTTCTGGGTCTGGTCTCCATTTCCCCAGTAGAATTCAGAAGTGATTTGATGCCTCCCAGTGGCTGATGGGTGGCAACGGGCTGTGTTGCGGTCTCTGATTACACTCCCGATTCTCACTTTATCAGGGCAGCCTCCCCGTTGGCCAAACCCCTGCCCATGGAGCAGTTTCAGGTGA
................................................................................................................................................................................................................................................................................(((((((((((.((((((..((((..(((...)))...)))).)))).)).)))))).)))))..................................................
............................................................................................................................................................................................................................................................................269...............................................................335................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		mjTestesWT3()
Testes Data. (testes)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR029040(GSM433292)
6w_hetero_tdrd6-KO. (tdrd6 testes)		SRR206940(GSM723281)
other. (brain)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		GSM361394(GSM361394)
CGNP_P6_wt_rep1. (brain)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR095853(SRX039174)
sequencing of miRNA from wild type and diseas. (heart)		SRR029041(GSM433293)
6w_homo_tdrd6-KO. (tdrd6 testes)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR553584(SRX182790)
source: Heart. (Heart)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM361399(GSM361399)
CGNP_P6_p53--_Ink4c--_rep2. (brain)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)
.................................................................................................................................................................................................................................................................................TGATGGGTGGCAACGGGCTGTGT......................................................................................... 2312.002.00--------------------------------------1.00------------------1.00-----
..........................................................................................................................................................................................................................................................................................................................................................CGTTGGCCAAACCCCAAA..................... 181.000.00------1.00--------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................TTCTCACTTTATCAGCCT............................................... 181.000.00-----------------------------------1.00---------------------------
.....................................................................CGCCAGCAGAAGGGTCCAC......................................................................................................................................................................................................................................................................................................... 191.000.00------------------------------1.00--------------------------------
................................................................................................................................................................................................................................................................................................................................TTCTCACTTTATCAGCTTT.............................................. 191.000.00------------------------------------------------1.00--------------
....................................................................................................................................................................................................................................ATTTCCCCAGTAGAAAAAC.......................................................................................................................................... 191.000.00----------------------1.00----------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................GCCAAACCCCTGCCCGCA................ 181.000.00------------------------------1.00--------------------------------
........................................................................................................................................TATCCAGAGGACAGAGCATCTTTGCAT.............................................................................................................................................................................................................................. 2711.001.00-----------------------------1.00---------------------------------
..................................................................................................................................................ACAGAGCATCTTTGCATGGT........................................................................................................................................................................................................................... 201.000.00--------------------1.00------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................AGGGCAGCCTCCCCG..................................... 1560.170.17--------------------------------------------------------------0.17