ID: uc007cub.12
GENE: Pkp1(12)
chr1:137805510-137805759-


(2)
AGO1.ip 		(2)
AGO2.ip 		(2)
AGO3.ip 		(1)
B-CELL 		(5)
BRAIN 		(1)
EMBRYO 		(4)
OTHER 		(1)
OTHER.mut 		(8)
SKIN 		(3)
TESTES 		(1)
TOTAL-RNA

Sense strand
TTCTTTGGTGAGCCCTGGCTATGGTGGATATGGAAAGAGGTGGCATGGCCATCAGATGATGAGCCAGTCTCCATCCTTCAGCAGGAACTCAGACAGTTTCCCTCCACAGAAGTTGTGGACCTGGCTGTGTGTGCAGGGAGCACGGGAGCAGGGATGGATGATGGTCATCCCTGTCCTAATCGTCCTTCTCTGCCCTGCAGGTTCCATGTATGATGGGCTGGCTGACAATTACAACAACTACGGCACCACG
..............................................................................................................................................((((.(((((((.(((((((((.((....)).))..))))))).))))))))))).....................................................
.......................................................................................................................................136.............................................................200................................................
SizePerfect hitTotal NormPerfect NormAgo3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR346415(SRX098256)
source: Testis. (Testes)		RuiDGCR8WT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)		RuiDcrWT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (salivary gland)		SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
............................................................................................................................................CACGGGAGCAGGGATGGATGAT........................................................................................221634.00634.00200.00165.00178.0037.0023.0019.009.001.00--1.00-1.00----------
.............................................................................................................................................ACGGGAGCAGGGATGGATGAT........................................................................................211142.00142.0034.0055.0029.0010.006.002.003.00-3.00--------------
............................................................................................................................................CACGGGAGCAGGGATGGATGA.........................................................................................21184.0084.0019.0020.0018.0014.005.007.001.00----------------
............................................................................................................................................CACGGGAGCAGGGATGGATGATT.......................................................................................23145.00634.008.0019.0011.003.001.001.001.00-----1.00----------
.............................................................................................................................................ACGGGAGCAGGGATGGATGATGG......................................................................................23141.0041.0014.008.0012.00-4.003.00-----------------
............................................................................................................................................CACGGGAGCAGGGATGGCTGA.........................................................................................2136.000.0012.004.0010.002.006.002.00-----------------
.............................................................................................................................................ACGGGAGCAGGGATGGATGATT.......................................................................................22127.00142.006.006.0010.001.002.001.00-1.00---------------
.............................................................................................................................................ACGGGAGCAGGGATGGATGATG.......................................................................................22121.0021.004.0011.002.003.00--1.00----------------
.............................................................................................................................................ACGGGAGCAGGGATGGATGACG.......................................................................................22117.0010.00---13.00-4.00-----------------
............................................................................................................................................CACGGGAGCAGGGATGGATGATA.......................................................................................23113.00634.004.003.001.001.001.00-1.001.001.00--------------
..............................................................................................................................................CGGGAGCAGGGATGGATGATGG......................................................................................22112.0012.002.002.008.00--------------------
...........................................................................................................................................GCACGGGAGCAGGGATGGATGAT........................................................................................23111.0011.005.002.001.002.00-1.00-----------------
............................................................................................................................................CACGGGAGCAGGGATGGATGAC........................................................................................22111.0084.00-1.00-3.00-7.00-----------------
.............................................................................................................................................ACGGGAGCAGGGATGGATGA.........................................................................................20110.0010.002.004.002.001.001.00------------------
...................................................................................................................................................................................TCGTCCTTCTCTGCCCTGCAG..................................................21110.0010.003.002.00-2.002.001.00-----------------
...................................................................................................................................................................................TCGTCCTTCTCTGCCCTGCAGA.................................................2219.0010.001.003.004.001.00-------------------
..............................................................................................................................................CGGGAGCAGGGATGGATGATG.......................................................................................2118.008.005.001.001.001.00-------------------
............................................................................................................................................CACGGGAGCAGGGATGGAT...........................................................................................1917.007.00-5.002.00--------------------
..............................................................................................................................................CGGGAGCAGGGATGGATGATT.......................................................................................2117.007.003.002.001.001.00-------------------
..............................................................................................................................................CGGGAGCAGGGATGGATGAT........................................................................................2017.007.004.002.001.00--------------------
...................................................................................................................................................................................TCGTCCTTCTCTGCCCTGCAT..................................................2116.001.00-2.00--2.00--2.00---------------
..................................................................................................................................................................................ATCGTCCTTCTCTGCCCTGCAT..................................................2216.003.00-1.00-3.00--1.001.00---------------
.............................................................................................................................................ACGGGAGCAGGGATGGATGACGG......................................................................................2316.0010.00---6.00-------------------
...........................................................................................................................................GCACGGGAGCAGGGATGGATGCT........................................................................................236.000.003.00-1.002.00-------------------
.............................................................................................................................................ACGGGAGCAGGGATGGATGATA.......................................................................................2215.00142.00-3.001.00--1.00-----------------
...........................................................................................................................................GCACGGGAGCAGGGATGGATGA.........................................................................................2215.005.003.00-2.00--------------------
..........................................................................................................................................AGCACGGGAGCAGGGATGGATGAT........................................................................................2414.004.001.001.002.00--------------------
...................................................................................................................................................................................TCGTCCTTCTCTGCCCTGCAGC.................................................2214.0010.00---4.00-------------------
..................................................................................................................................................................................ATCGTCCTTCTCTGCCCTGCAGT.................................................234.000.00---3.00-1.00-----------------
.............................................................................................................................................ACGGGAGCAGGGATGGATGAC........................................................................................2114.0010.00---2.00-2.00-----------------
.............................................................................................................................................ACGGGAGCAGGGATGGATGATGGT.....................................................................................2414.004.002.001.00-----------1.00---------
............................................................................................................................................CACGGGAGCAGGGATGGATGT.........................................................................................2113.001.001.001.001.00--------------------
...........................................................................................................................................GCACGGGAGCAGGGATGGAT...........................................................................................2013.003.00--1.00-1.001.00-----------------
...........................................................................................................................................GCACGGGAGCAGGGATGGATGC.........................................................................................223.000.001.00--2.00-------------------
..................................................................................................................................................................................ATCGTCCTTCTCTGCCCTGCA...................................................2113.003.00---3.00-------------------
............................................................................................................................................CACGGGAGCAGGGATGGATGATG.......................................................................................2313.003.002.00--1.00-------------------
..............................................................................................................................................CGGGAGCAGGGATGGATGACGG......................................................................................2213.001.00---2.001.00------------------
............................................................................................................................................CACGGGAGCAGGGATGGATGAA........................................................................................2213.0084.001.001.00-1.00-------------------
............................................................................................................................................CACGGGAGCAGGGATGGATGAG........................................................................................2212.0084.00--2.00--------------------
............................................................................................................................................CACGGGAGCAGGGATGGCT...........................................................................................192.000.001.00-1.00--------------------
...................................................................................................................................................................................TCGTCCTTCTCTGCCCTGCATT.................................................2212.001.00-1.00----1.00----------------
............................................................................................................................................CACGGGAGCAGGGATGGATGATAT......................................................................................2412.00634.002.00----------------------
.............................................................................................................................................ACGGGAGCAGGGATGGATGGT........................................................................................212.000.00-2.00---------------------
.............................................................................................................................................ACGGGAGCAGGGATGGATGATGGA.....................................................................................2412.0041.001.001.00---------------------
...............................................................................................................................................GGGAGCAGGGATGGATGATGG......................................................................................2112.002.00-1.00----1.00----------------
..............................................................................................................................................CGGGAGCAGGGATGGATGATGGA.....................................................................................2312.0012.002.00----------------------
............................................................................................................................................CACGGGAGCAGGGATGGATGACT.......................................................................................2312.0084.00---2.00-------------------
...............................................................................................................................................GGGAGCAGGGATGGATGCT........................................................................................192.000.00-2.00---------------------
.............................................................................................................................................ACGGGAGCAGGGATGGATGATGA......................................................................................2312.0021.00--1.001.00-------------------
..............................................................................................................................................CGGGAGCAGGGATGGATGACG.......................................................................................2112.001.00-----2.00-----------------
.............................................................................................................................................ACGGGAGCAGGGATGGATGATC.......................................................................................2212.00142.00-1.001.00--------------------
...............................................................................................................................................GGGAGCAGGGATGGATGC.........................................................................................182.000.00----2.00------------------
...................................................................................................................................................................................TCGTCCTTCTCTGCCCTGCAGTA................................................2312.0010.00-1.00-1.00-------------------
...................................................................................................................................................................................TCGTCCTTCTCTGCCCTGCTT..................................................212.000.00-1.00--1.00------------------
...........................................................................................................................................GCACGGGAGCAGGGATGGATGATT.......................................................................................2412.0011.002.00----------------------
.............................................................................................................................................ACGGGAGCAGGGATGGATGCT........................................................................................212.000.001.00--1.00-------------------
...................................................................................................................................................................................TCGTCCTTCTCTGCCCTGCAGCT................................................2311.0010.00---1.00-------------------
...........................ATATGGAAAGAGGTGTGGA............................................................................................................................................................................................................191.000.00-----------------1.00-----
............................................................................................................................................CACGGGAGCAGGGATGGATGAAG.......................................................................................2311.0084.00-1.00---------------------
...........................................................................................................................................GCACGGGAGCAGGGATGGATGCTT.......................................................................................241.000.001.00----------------------
..........................................................................................................................................AGCACGGGAGCAGGGATGGAT...........................................................................................2111.001.00--1.00--------------------
...................................................................................................................................................................................TCGTCCTTCTCTGCCCTGCCTT.................................................221.000.00--------1.00--------------
.....................................................................................................................................................................................GTCCTTCTCTGCCCTGCAT..................................................191.000.00---------------------1.00-
............................TATGGAAAGAGGTGGCTGT...........................................................................................................................................................................................................191.000.00---------1.00-------------
.............................................................................................................................................ACGGGAGCAGGGATGGATGATGGTTT...................................................................................2611.004.001.00----------------------
............................................................................................................................................CACGGGAGCAGGGATGGATGACG.......................................................................................2311.0084.00-----1.00-----------------
...................................................................................................................................................................................TCGTCCTTCTCTGCCCTGCATA.................................................2211.001.00----1.00------------------
............................TATGGAAAGAGGTGGCTGCT..........................................................................................................................................................................................................201.000.00-----------1.00-----------
...................................................................................................................................................................................TCGTCCTTCTCTGCCCTGCAGT.................................................2211.0010.001.00----------------------
.............................................................................................................................................ACGGGAGCAGGGATGGATGATTT......................................................................................2311.00142.00-1.00---------------------
.............................................................................................................................................ACGGGAGCAGGGATGGATGACA.......................................................................................2211.0010.00---1.00-------------------
................................................................................................................................................................................................................TATGATGGGCTGGCTGACAATTACAAC...............2711.001.00---------------1.00-------
...............................................................................................................................................GGGAGCAGGGATGGATGA.........................................................................................1811.001.00----1.00------------------
.....................................................................................................................................................AGGGATGGATGATGGAGGT..................................................................................191.000.00----------------1.00------
.............................................................................................................................................ACGGGAGCAGGGATGGATGT.........................................................................................201.000.00---1.00-------------------
..................................................................................................................................................................................ATCGTCCTTCTCTGCCCTGCAGA.................................................231.000.00----------1.00------------
...............................................................................................................................................GGGAGCAGGGATGGATGATGGTT....................................................................................231.000.001.00----------------------
............................TATGGAAAGAGGTGGATGT...........................................................................................................................................................................................................191.000.00---------1.00-------------
.............................................................................................................................................ACGGGAGCAGGGATGGATGTA........................................................................................211.000.00-1.00---------------------
...............................................................................................................................................GGGAGCAGGGATGGATGATG.......................................................................................2011.001.00---1.00-------------------
..............................................................................................................................................CGGGAGCAGGGATGGATGAGGG......................................................................................2211.001.00--1.00--------------------
............................................................................................................................................CACGGGAGCAGGGATGGATGTAT.......................................................................................2311.001.00--1.00--------------------
...................................................................................................................................................................................TCGTCCTTCTCTGCCCTGCT...................................................201.000.00------1.00----------------
..............................................................................................................................................CGGGAGCAGGGATGGATGA.........................................................................................1911.001.00--1.00--------------------
............................................................................................................................................CACGGGAGCAGGGATGGATG..........................................................................................2011.001.00--1.00--------------------
.............................................................................................................................................ACGGGAGCAGGGATGGACGAT........................................................................................211.000.00--1.00--------------------
...................................................................................................................................................................................TCGTCCTTCTCTGCCCTGCATC.................................................2211.001.00-1.00---------------------
...................................................................................................................................TGCAGGGAGCACGGGAGCAGGGA................................................................................................2311.001.001.00----------------------
..........................................................................................................................................AGCACGGGAGCAGGGATGGATGA.........................................................................................2311.001.00--1.00--------------------
............................................................................................................................................CACGGGAGCAGGGATGGATA..........................................................................................2011.007.00---1.00-------------------
............................................................................................................................................CACGGGAGCAGGGATGGATGATTA......................................................................................2411.00634.00-1.00---------------------
....................................................................................................................................................................................CGTCCTTCTCTGCCCTGCAGT.................................................211.000.00-----1.00-----------------
............................................................................................................................................CACGGGAGCAGGGATGGATAGT........................................................................................2211.007.001.00----------------------
........................................TGGCATGGCCATCAGGAT................................................................................................................................................................................................181.000.00-------------------1.00---
................................................................................................................................................GGAGCAGGGATGGATGAT........................................................................................1811.001.00-1.00---------------------
...............................................................................................................................................GGGAGCAGGGATGGATGATGGA.....................................................................................2211.002.001.00----------------------
.............................................................................................................................................ACGGGAGCAGGGATGGATGATGGTCT...................................................................................261.000.001.00----------------------
...............................................................................................................................................GGGAGCAGGGATGGATGCCG.......................................................................................201.000.00---1.00-------------------
...................................................................................................................................TGCAGGGAGCACGGGAGCAGG..................................................................................................2111.001.00---1.00-------------------
..............................................................................................................................................CGGGAGCAGGGATGGATGATGT......................................................................................2211.008.00----1.00------------------
............................................................................................................................................CACGGGAGCAGGGATGGCTG..........................................................................................201.000.00---1.00-------------------
...................................................................................................................................................................................TCGTCCTTCTCTGCCCTGCAAC.................................................2211.001.00---1.00-------------------
.............................................................................................................................................ACGGGAGCAGGGATGGATGATGT......................................................................................2311.0021.00--1.00--------------------
...........................................................................................................................................GCACGGGAGCAGGGATGGATGCA........................................................................................231.000.00---1.00-------------------
.............................................................................TCAGCAGGAACTCAGACC...........................................................................................................................................................181.000.00-----------1.00-----------
............................................................................................................................................CACGGGAGCAGGGATGGATGATCT......................................................................................2411.00634.001.00----------------------
...................................................................................................................................................................................TCGTCCTTCTCTGCCCTGCA...................................................2011.001.001.00----------------------
........................................................................ATCCTTCAGCAGGAACAGA...............................................................................................................................................................191.000.00------------------1.00----
............................................................................................................................................CACGGGAGCAGGGATGGATAAG........................................................................................2211.007.00--1.00--------------------
...........................................................................................................................................GCACGGGAGCAGGGATGGA............................................................................................1911.001.00-1.00---------------------
............................................................................................................................................CACGGGAGCAGGGATGGATAAT........................................................................................2211.007.00--1.00--------------------
...................................................................................................................................................................................TCGTCCTTCTCTGCCCTGCAGAA................................................2311.0010.00-1.00---------------------
............................................................................................................................................CACGGGAGCAGGGATGGATCAT........................................................................................2211.007.00-1.00---------------------

Antisense strand
TTCTTTGGTGAGCCCTGGCTATGGTGGATATGGAAAGAGGTGGCATGGCCATCAGATGATGAGCCAGTCTCCATCCTTCAGCAGGAACTCAGACAGTTTCCCTCCACAGAAGTTGTGGACCTGGCTGTGTGTGCAGGGAGCACGGGAGCAGGGATGGATGATGGTCATCCCTGTCCTAATCGTCCTTCTCTGCCCTGCAGGTTCCATGTATGATGGGCTGGCTGACAATTACAACAACTACGGCACCACG
..............................................................................................................................................((((.(((((((.(((((((((.((....)).))..))))))).))))))))))).....................................................
.......................................................................................................................................136.............................................................200................................................
SizePerfect hitTotal NormPerfect NormAgo3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR346415(SRX098256)
source: Testis. (Testes)		RuiDGCR8WT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)		RuiDcrWT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (salivary gland)		SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
...................................................................TCTCCATCCTTCAGCGGC..................................................................................................................................................................... 181.000.00--------------1.00--------
...................................................................................................................................................................................TCGTCCTTCTCTGCCGTTT.................................................... 191.000.00--------------------1.00--
............................................................................................................................................................................................TCTGCCCTGCAGGTTCGGT........................................... 191.000.00---------1.00-------------
..........................................................ATGAGCCAGTCTCCAT................................................................................................................................................................................ 1650.200.20----------------------0.20