ID: uc007bwx.4
GENE: Ngef(4)
chr1:89377805-89378054-


(5)
AGO2.ip 		(18)
BRAIN 		(2)
DGCR8.mut 		(1)
EMBRYO 		(2)
FIBROBLAST 		(3)
LIVER 		(1)
LUNG 		(5)
OTHER 		(1)
OTHER.mut 		(2)
TESTES 		(1)
UTERUS

Sense strand
ACACATAGGACACATATATTCATGTGAAAACTCACCCCTGCTGCTGTTTTGCTGCAGGGCCGGTGGCAGGGAGTATGATGGCCCCACACAGTCCTTGCACACCGTCTCGCAGCTTTTCTCCAGGTGTGGCATCTGTAGGCCCCTCAGGAGGGTGTGGGAGTGCAAGGGTGCTGCCACCTGACGCCTCCTCCCCTCCCCAGTCGGTACCCATCATCTCACACTCCCGGTGGCTGCTGAAGCAGGGTGAGCT
..................................................................................................................................................((((((...(((((.((..(((((....)))))...))))))).))))))......................................................
..........................................................................................................................................139..........................................................200................................................
SizePerfect hitTotal NormPerfect NormmjLiverKO2()
Liver Data. (Zcchc11 liver)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR206940(GSM723281)
other. (brain)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR206942(GSM723283)
other. (brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR206939(GSM723280)
other. (brain)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		mjTestesWT3()
Testes Data. (testes)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR073954(GSM629280)
total RNA. (blood)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (salivary gland)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR206941(GSM723282)
other. (brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR065053(SRR065053)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
...............................................................................................................................................TCAGGAGGGTGTGGGAGTGCAAGG...................................................................................24118.0018.0015.00-1.00------------------1.00-----1.00-----
................................................................................................................................................CAGGAGGGTGTGGGAGTGCAA.....................................................................................21114.0014.00-11.00-----2.00---1.00---------------------
................................................................................................................................................CAGGAGGGTGTGGGAGTGCAAGG...................................................................................2313.003.00--2.00-----1.00------------------------
....................................................................................................................................................................................ACGCCTCCTCCCCTCC......................................................1652.602.60----2.00--------0.40-----------------0.20-
...............................................................................................................................................TCAGGAGGGTGTGGGAGTGCAAGT...................................................................................2412.001.00--1.00-----1.00------------------------
..................................................................................................................................................................................TGACGCCTCCTCCCCTCCCCAG..................................................2212.002.00-------1.00----1.00--------------------
..................................................................................................................................................................................TGACGCCTCCTCCCCTCCCCA...................................................2112.002.00------1.00--1.00-----------------------
..................................................................................................................................................................................TGACGCCTCCTCCCCTCCCCAT..................................................2212.002.00-----1.00----1.00----------------------
....................................................................................................................................................................................ACGCCTCCTCCCCTC.......................................................1591.561.56----1.22--------0.11-----------------0.110.11
................................................................................................................................................CAGGAGGGTGTGGGAGTGCAT.....................................................................................211.000.00--1.00------------------------------
.................................................................................................................................................AGGAGGGTGTGGGAGTGCAAGGT..................................................................................231.000.00--------------------------1.00------
..................................................................................................................................................................................TGACGCCTCCTCCCCTCCCC....................................................2011.001.00------------1.00--------------------
...............ATATTCATGTGAAAATG..........................................................................................................................................................................................................................171.000.00-------------1.00-------------------
................................................................................................................................................CAGGAGGGTGTGGGAGTGC.......................................................................................1911.001.00-----------------------1.00---------
................................................................................................................................................CAGGAGGGTGTGGGAGTGCAAGGG..................................................................................2411.001.00---1.00-----------------------------
................................................................................................................................................CAGGAGGGTGTGGGAGTGCAAG....................................................................................2211.001.00--1.00------------------------------
................................................................................................................................................CAGGAGGGTGTGGGAGTGCAAA....................................................................................2211.0014.00--1.00------------------------------
...............................................................................................................................................TCAGGAGGGTGTGGGAGTGCAAGGA..................................................................................2511.0018.00-----1.00---------------------------
..................................................................................................................................................................................TGACGCCTCCTCCCCTCCCCAAT.................................................2311.002.00----------1.00----------------------
........................................................................................................................................................................TGCTGCCACCTGACGTCA................................................................181.000.00----------------1.00----------------
..................................................................................................................................................................................TGACGCCTCCTCCCCTCCCCAAAA................................................2411.002.00--------1.00------------------------
...............................................................................................................................................TCAGGAGGGTGTGGGAGTGCAAG....................................................................................2311.001.00--------------------1.00------------
..................................................................................................................................................GGAGGGTGTGGGAGTGC.......................................................................................1711.001.00-----------------------------1.00---
.................................................................................................................................................AGGAGGGTGTGGGAGTGC.......................................................................................1811.001.00----------------------------1.00----
..................................................................................................................................................................................TGACGCCTCCTCCCCTCCT.....................................................191.000.00---------1.00-----------------------
..................................................................................................................................................................................TGACGCCTCCTCCCCTCCCCAAG.................................................2311.002.00-----1.00---------------------------
...............................................................................................................................................TCAGGAGGGTGTGGGAGTGCAAGGT..................................................................................2511.0018.00------1.00--------------------------
..................................................................................................................................................................................TGACGCCTCCTCCCCTCCCCAGT.................................................2311.001.00------1.00--------------------------
................................................................................................................................................CAGGAGGGTGTGGGAGTGCAAGGT..................................................................................2411.003.00---------1.00-----------------------
................................................................................................................................................CAGGAGGGTGTGGGAGTGCAAGA...................................................................................2311.001.00--1.00------------------------------
.....................................................................GGAGTATGATGGCCCTTTG..................................................................................................................................................................191.000.00---------------1.00-----------------
................................................................................................................................................CAGGAGGGTGTGGGAGTGAAA.....................................................................................211.000.00---1.00-----------------------------
..................................................................................................................................................................................TGACGCCTCCTCCCCTCCCCATA.................................................2311.002.00---1.00-----------------------------
...............................................................................................................................................TCAGGAGGGTGTGGGAGTGCAAA....................................................................................231.000.00---1.00-----------------------------
...........................................................................................................................GTGTGGCATCTGTAGGCCCCTCAGGAG....................................................................................................2711.001.00--------------1.00------------------
.........................................................................................................................................................GTGGGAGTGCAAGGGG.................................................................................161.000.00-------------------1.00-------------
.............................................................................................................................................................................................................................TCCCGGTGGCTGCTGCCTT..........191.000.00----------------------1.00----------
...............................................................................................................................................TCAGGAGGGTGTGGGAGTGC.......................................................................................2011.001.00-----------1.00---------------------
...............................................................................................................................................TCAGGAGGGTGTGGGAGTGCAAGA...................................................................................2411.001.00------------------------1.00--------

Antisense strand
ACACATAGGACACATATATTCATGTGAAAACTCACCCCTGCTGCTGTTTTGCTGCAGGGCCGGTGGCAGGGAGTATGATGGCCCCACACAGTCCTTGCACACCGTCTCGCAGCTTTTCTCCAGGTGTGGCATCTGTAGGCCCCTCAGGAGGGTGTGGGAGTGCAAGGGTGCTGCCACCTGACGCCTCCTCCCCTCCCCAGTCGGTACCCATCATCTCACACTCCCGGTGGCTGCTGAAGCAGGGTGAGCT
..................................................................................................................................................((((((...(((((.((..(((((....)))))...))))))).))))))......................................................
..........................................................................................................................................139..........................................................200................................................
SizePerfect hitTotal NormPerfect NormmjLiverKO2()
Liver Data. (Zcchc11 liver)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR206940(GSM723281)
other. (brain)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR206942(GSM723283)
other. (brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR206939(GSM723280)
other. (brain)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		mjTestesWT3()
Testes Data. (testes)		GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR073954(GSM629280)
total RNA. (blood)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (salivary gland)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR206941(GSM723282)
other. (brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR065053(SRR065053)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
....................................................................................................................................................................................ACGCCTCCTCCCCTCTTAA................................................... 1991.000.00-------------------------1.00-------
...........................................................................................................................................................................TGCCACCTGACGCCTCTTA............................................................ 191.000.00------------------1.00--------------
.......................................................................................................................................................................................CCTCCTCCCCTCCCCAGGGAG.............................................. 211.000.00-----------------1.00---------------
........................................................................................CAGTCCTTGCACACCCGTG............................................................................................................................................... 191.000.00------------------------------1.00--