ID: mmu-mir-7092
GENE: D0HXS9928E(3)
chrX:71562569-71562818+


(1)
AGO.mut
(5)
AGO2.ip
(12)
B-CELL
(25)
BRAIN
(5)
CELL-LINE
(2)
DCR.mut
(2)
DGCR8.mut
(10)
EMBRYO
(11)
ESC
(4)
FIBROBLAST
(4)
HEART
(2)
KIDNEY
(10)
LIVER
(3)
LYMPH
(10)
OTHER
(9)
OTHER.mut
(5)
PIWI.ip
(2)
PIWI.mut
(5)
SPLEEN
(27)
TESTES
(1)
THYMUS
(6)
TOTAL-RNA
(1)
UTERUS

Sense strand
ATCATTTTCAGGCCAGGCATGTTGGTACACTGATTTTAGGACTTGAGAGGCAGAGGCAGGCAGATCTCTCTGAGTTTGAGCCCACCCTGCTCTACATAGAGAATTACATCCAGGGCTACATAAACGTGATTATGTCTAAAGGCAAACTCACAGAATCATTTTCTGAAAAAATAAAATGTTCTTTGTTTTGTTTGCCTTAGAGATCACCACAAAGAAAAAGAAATTGGGGAAGAACCCTGATGTGGACACA
..........................................................................................................................................(((((((((...(((((.....)))))..((((((((......)))))))))))))))))....................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormmjLiverWT1()
Liver Data. (liver)
SRR553582(SRX182788)
source: Brain. (Brain)
SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)
mjLiverKO1()
Liver Data. (Zcchc11 liver)
SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)
SRR206941(GSM723282)
other. (brain)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)
SRR553585(SRX182791)
source: Kidney. (Kidney)
SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)
SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)
SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)
SRR402760(SRX117943)
source: ES E14 male cells. (ESC)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR038744(GSM527279)
small RNA-Seq. (brain)
SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)
SRR073954(GSM629280)
total RNA. (blood)
SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)
SRR037925(GSM510463)
e9p5_rep3. (embryo)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR553584(SRX182790)
source: Heart. (Heart)
GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)
SRR402766(SRX117949)
source: ES PGK female cells. (ESC)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)
GSM510456(GSM510456)
newborn_rep12. (total RNA)
SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)
SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)
SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)
SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)
SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)
GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)
SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)
SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)
SRR037914(GSM510451)
newborn_rep7. (total RNA)
SRR206940(GSM723281)
other. (brain)
SRR039610(GSM527274)
small RNA-Seq. (brain)
SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (salivary gland)
SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)
SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)
SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
mjTestesWT2()
Testes Data. (testes)
SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)
SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)
SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)
SRR037924(GSM510462)
e9p5_rep2. (embryo)
SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)
SRR206942(GSM723283)
other. (brain)
SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)
GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)
SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)
mjLiverKO3()
Liver Data. (Zcchc11 liver)
SRR038741(GSM527276)
small RNA-Seq. (brain)
SRR037912(GSM510449)
newborn_rep5. (total RNA)
SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)
SRR206939(GSM723280)
other. (brain)
SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)
SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)
SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR306535(GSM750578)
19-24nt. (ago2 brain)
SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)
SRR037929(GSM510467)
e7p5_rep3. (embryo)
SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)
SRR402761(SRX117944)
source: ES E14 male cells. (ESC)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
SRR306542(GSM750585)
19-24nt. (ago2 brain)
SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)
SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)
SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)
SRR059776(GSM562838)
MEF_Dicer. (MEF)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR095855BC5(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)
GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)
GSM510453(GSM510453)
newborn_rep9. (total RNA)
SRR042453(GSM539845)
mouse marginal zone B cells (spleen) [09-002]. (b cell)
GSM510454(GSM510454)
newborn_rep10. (total RNA)
SRR042476(GSM539868)
mouse heart tissue [09-002]. (heart)
SRR037920(GSM510458)
e12p5_rep2. (embryo)
SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR306540(GSM750583)
19-24nt. (ago2 brain)
SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)
SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)
SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)
SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR306531(GSM750574)
19-24nt. (ago2 brain)
SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)
SRR038740(GSM527275)
small RNA-Seq. (dicer brain)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)
SRR306541(GSM750584)
19-24nt. (ago2 brain)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR042479(GSM539871)
mouse liver tissue [09-002]. (liver)
SRR037909(GSM510446)
newborn_rep2. (total RNA)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
SRR346415(SRX098256)
source: Testis. (Testes)
SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
mjLiverWT3()
Liver Data. (liver)
SRR059769(GSM562831)
Treg_Drosha. (spleen)
SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
mjTestesWT3()
Testes Data. (testes)
................................................................................................................................................................................TGTTCTTTGTTTTGTTTGCCTTAG..................................................241102.00102.0022.009.008.00-2.004.008.006.00--4.002.00-4.003.00---4.003.00--2.00---1.00-1.002.001.00-1.001.002.00---2.00------2.001.00--------1.00------2.00---------------1.001.00-------1.00----------------------------------1.00-------------
................................................................................................................................................................................TGTTCTTTGTTTTGTTTGCCTTAGT.................................................25146.00102.004.00------1.00---1.00-1.00--8.00--1.00-4.00--5.00--1.00-1.002.00---------2.001.00--1.001.00--2.00----------------------1.00--1.00---1.00-------------------1.00------1.00-1.00------1.00-----1.00----1.001.00---------
...............................................................................................................................................................................ATGTTCTTTGTTTTGTTTGCCTTAG..................................................25143.0043.0010.004.002.00-4.00-6.00---3.001.00-1.00-----1.00--------------1.00--------2.00-----------1.00--------------------1.00---------1.00--------1.00----------------1.00--------------1.001.00--1.00----
........................................................................................................................................TAAAGGCAAACTCACAGAATCAT...........................................................................................23134.0034.00-2.001.00-3.00----3.00-1.001.001.001.00-----1.00------2.002.00---2.00----------------1.00----2.00---1.00-------1.00--------1.00----1.00----------------1.00----1.00--------1.00-1.00---1.001.00-----1.00-----------
.........................................................................................................................................AAAGGCAAACTCACAGAATCATT..........................................................................................23131.0031.00-2.00-------1.00--1.00---------1.00----2.00-------2.001.00--2.00--2.00---2.002.00--1.002.00-1.00---------1.001.001.00----------------1.00-------1.00-1.00-----------1.00-1.00--1.00--------------------------
.........................................................................................................................................AAAGGCAAACTCACAGAATCAT...........................................................................................22122.0022.00----1.00----1.00--1.00-------4.00--3.00------------2.00------------1.001.00--------------1.00-1.00--1.00-1.00-----------1.00--------1.00---------1.00----1.00---------------------------
........................................................................................................................................TAAAGGCAAACTCACAGAATCATT..........................................................................................24118.0018.00--2.00-1.00----1.001.00-2.00-------1.00-1.00---------1.00--------1.001.00-----1.001.00-1.00---------------1.00------------1.00---------------1.00---------------------------------------
................................................................................................................................................................................TGTTCTTTGTTTTGTTTGCCTTAGA.................................................25116.0016.00-----------2.00--2.00---------1.003.00----1.00--1.001.00-----------------------------------------1.00----1.00-------1.00-1.00------------------1.00-------------------------
........................................................................................................................................TAAAGGCAAACTCACAGAATCA............................................................................................22114.0014.00---------3.00--1.00-----2.00--------------------1.00----------1.00-1.00---------------1.00--1.00-2.00-------------------------------------------------1.00------------
........................................................................................................................................TAAAGGCAAACTCACAGAATC.............................................................................................21111.0011.00--2.00-2.00--1.00---1.00-1.001.00-------------2.00-------------------------------------------1.00---------------------------------------------------------------
........................................................................................................................................TAAAGGCAAACTCACAGAATCATTTTCTGT....................................................................................308.000.00---------------8.00------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................TAAAGGCAAACTCACAGAAT..............................................................................................2017.007.00------------1.00----------1.00-----------2.00-----------------1.00--1.00--1.00----------------------------------------------------------------------------
..............................................................................................................................................................................AATGTTCTTTGTTTTGTTTGCC......................................................2217.007.006.00------------------------1.00--------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................AATGTTCTTTGTTTTGTTTGCCTTAG..................................................2617.007.00-1.00--1.00-1.001.00-----------1.00------------------------------------------------1.00----------1.00--------------------------------------------------------
..................................................................................................................................................................................TTCTTTGTTTTGTTTGCCTTAG..................................................2216.006.00-----6.00----------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................TGTTCTTTGTTTTGTTTGCCTTA...................................................2315.005.00-----2.00----------------1.00-----------------1.00---------------------------------1.00-------------------------------------------------------------
................................................................................................................................................................................TGTTCTTTGTTTTGTTTGCCTT....................................................2215.005.00-----2.00-2.00----------------------1.00---------------------------------------------------------------------------------------------------------
.........................................................................................................................................AAAGGCAAACTCACAGAATCA............................................................................................2114.004.00--------------------1.00--2.00-----------------------------------------------------------1.00----------------------------------------------------
...............................................................................................................................................................................ATGTTCTTTGTTTTGTTTGCCTAA...................................................243.000.00---------------------------------1.00----------1.00------------------------------1.00------------------------------------------------------------
.........................................................................................................................................AAAGGCAAACTCACAGAATC.............................................................................................2013.003.00----1.00-------------------------------------------------------1.00--1.00------------------------------------------------------------------------
......................................................................................................................................TCTAAAGGCAAACTCACAGAAT..............................................................................................2213.003.00---------------------1.001.00----------------------------------------------------------------------------------------------------------1.00------
................................................................................................................................................................................TGTTCTTTGTTTTGTTTGCCTTAT..................................................2413.005.001.002.00--------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................TGTTCTTTGTTTTGTTTGC.......................................................1922.502.50-------------------1.00-1.50------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................ATGTTCTTTGTTTTGTTTGCCTTAGA.................................................2612.002.00--------------1.00--------------------------------------------------------------------------------------------------------1.00----------------
..............................................................................................................................................................................................................CCACAAAGAAAAAGAAGGA.........................192.000.00---------------------------------------------------------------------2.00------------------------------------------------------------------
................................................................................................................................................................................TGTTCTTTGTTTTGTTTGCCTTAAAA................................................2612.005.00-------------------------2.00--------------------------------------------------------------------------------------------------------------
........................................................................................................................................TAAAGGCAAACTCACAGAATCATTT.........................................................................................2512.002.00-----------------------------2.00----------------------------------------------------------------------------------------------------------
........................................................................................................................................TAAAGGCAAACTCACAGAA...............................................................................................1912.002.00----------------------------------------------------------1.00---------------------------------------------------------1.00-------------------
.........................................................................................................................................AAAGGCAAACTCACAGAATCATTTT........................................................................................2512.002.00-----------------------------------------------------------1.00----1.00-----------------------------------------------------------------------
..........................................................................................................................................AAGGCAAACTCACAGAATCAT...........................................................................................2112.002.00----1.00---------------------------1.00-------------------------------------------------------------------------------------------------------
....................................TAGGACTTGAGAGGCAGAGGCAATA.............................................................................................................................................................................................252.000.00---------------------------------------------------------1.00-------------------1.00----------------------------------------------------------
................................................................................................................................................................................TGTTCTTTGTTTTGTTTGCCT.....................................................2112.002.00-------1.00---1.00----------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................AATGTTCTTTGTTTTGTTTGC.......................................................2111.001.00-1.00--------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................TGTTCTTTGTTTTGTTTGCCTCAGA.................................................2511.002.00--------------------------------------1.00-------------------------------------------------------------------------------------------------
................................................................................................................................................................................TGTTCTTTGTTTTGTTTGCCTTAC..................................................2411.005.00-----1.00----------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................TAAAGGCAAACTCACAGAATAATT..........................................................................................2411.007.00-------------------------------------------1.00--------------------------------------------------------------------------------------------
...............................................................................................................................................................................ATGTTCTTTGTTTTGTTTGCC......................................................2111.001.00-1.00--------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................AAGGCAAACTCACAGAATCATT..........................................................................................2211.001.00------------------------------------------------------------1.00---------------------------------------------------------------------------
...............................................................................................................................................................................ATGTTCTTTGTTTTGTTTGCCTT....................................................2311.001.00--------------------------1.00-------------------------------------------------------------------------------------------------------------
............................ACTGATTTTAGGACTTGAGAGGCAGAGG..................................................................................................................................................................................................2811.001.00-----------------------------------------1.00----------------------------------------------------------------------------------------------
.........................................................................................................................................AAAGGCAAACTCACAGAATCATA..........................................................................................2311.0022.00----------------------------------------------------------------------1.00-----------------------------------------------------------------
................................................................................................................................................................................TGTTCTTTGTTTTGTTTGCCTGAGT.................................................2511.002.00---------------------------------1.00------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................AATGTTCTTTGTTTTGTTTGCCT.....................................................2311.001.00----------------------------------------------------------------------------------------------1.00-----------------------------------------
........................................................................................................................................TAAAGGCAAACTCACAGAAC..............................................................................................2011.002.00--------------------------------------------------------1.00-------------------------------------------------------------------------------
.................................................................................................................................................................................................GCCTTAGAGATCACCATG.......................................181.000.00------------------------------------------------------------------1.00---------------------------------------------------------------------
..........................................................................................................................................AAGGCAAACTCACAGAATCA............................................................................................2011.001.00------------1.00---------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTTCTTTGTTTTGTTTGCCTTAGT.................................................241.000.00----------------------------------------------------------------------------------------------------1.00-----------------------------------
...............................................................................................................................................................................ATGTTCTTTGTTTTGTTTGCCTTAA..................................................251.000.00--------------------------------------------1.00-------------------------------------------------------------------------------------------
..................................................................................................................................................................................TTCTTTGTTTTGTTTGCCTTAGAGT...............................................251.000.00--1.00-------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................GTCTAAAGGCAAACTCACAGAA...............................................................................................2211.001.00-----------------------------------------------1.00----------------------------------------------------------------------------------------
................................................................................................................................................................................TGTTCTTTGTTTTGTTTGCCTTCG..................................................2411.005.00----------1.00-----------------------------------------------------------------------------------------------------------------------------
...............GGCATGTTGGTACACTG..........................................................................................................................................................................................................................1711.001.00----------------------------------------------------------------------------------------1.00-----------------------------------------------
.....................................................................................................................................................................................................................................AAGAACCCTGATGTGGACAC.2011.001.00-------1.00--------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................CCACAAAGAAAAAGAAGAGT........................201.000.00------------------1.00---------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................CTTTGTTTTGTTTGCCTTAGTA................................................221.000.00----------------------------------------------------1.00-----------------------------------------------------------------------------------
....................................TAGGACTTGAGAGGCAGAGGCAGAA.............................................................................................................................................................................................251.000.00--------------------------1.00-------------------------------------------------------------------------------------------------------------
......................................................................................................................................TCTAAAGGCAAACTCACAGAATC.............................................................................................2311.001.00---------1.00------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................AATGTTCTTTGTTTTGTTTGCCTT....................................................2411.001.00-1.00--------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................GGGGAAGAACCCTGATGTGGACA..2311.001.00---------------------------------------------------------------------------------------------------1.00------------------------------------
.........................................................................................................................................AAAGGCAAACTCACAGAAGCA............................................................................................211.000.00-------------------------------------------------------------------------------------------------------------------------1.00--------------
..........................................................................................................................................AAGGCAAACTCACAGAAT..............................................................................................1820.500.50---------------------------0.50------------------------------------------------------------------------------------------------------------
........................................................................................................................................TAAAGGCAAACTCACAGA................................................................................................1820.500.50------------------------------------------------------------------------------------------------------------------------------------0.50---
....................................TAGGACTTGAGAGGCAGAGGCAGG..............................................................................................................................................................................................2430.330.33--------------------------0.33-------------------------------------------------------------------------------------------------------------
....................................TAGGACTTGAGAGGCAGAGG..................................................................................................................................................................................................2050.200.20--------------------------------------------------------------------------------------------------------------------------------------0.20-
....................................TAGGACTTGAGAGGCAGAG...................................................................................................................................................................................................1950.200.20--------------------------0.20-------------------------------------------------------------------------------------------------------------
....................................TAGGACTTGAGAGGCAGA....................................................................................................................................................................................................1860.170.17---------------------------------------------------------------------------------------------------------------------------------------0.17
........................................................................................................................................TAAAGGCAAACTCACA..................................................................................................1680.120.12----------------------------------------------------0.12-----------------------------------------------------------------------------------

Antisense strand
ATCATTTTCAGGCCAGGCATGTTGGTACACTGATTTTAGGACTTGAGAGGCAGAGGCAGGCAGATCTCTCTGAGTTTGAGCCCACCCTGCTCTACATAGAGAATTACATCCAGGGCTACATAAACGTGATTATGTCTAAAGGCAAACTCACAGAATCATTTTCTGAAAAAATAAAATGTTCTTTGTTTTGTTTGCCTTAGAGATCACCACAAAGAAAAAGAAATTGGGGAAGAACCCTGATGTGGACACA
..........................................................................................................................................(((((((((...(((((.....)))))..((((((((......)))))))))))))))))....................................................
...................................................................................................................................132.................................................................200................................................
SizePerfect hitTotal NormPerfect NormmjLiverWT1()
Liver Data. (liver)
SRR553582(SRX182788)
source: Brain. (Brain)
SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)
mjLiverKO1()
Liver Data. (Zcchc11 liver)
SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)
SRR206941(GSM723282)
other. (brain)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)
SRR553585(SRX182791)
source: Kidney. (Kidney)
SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)
SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)
SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)
SRR402760(SRX117943)
source: ES E14 male cells. (ESC)
SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR038744(GSM527279)
small RNA-Seq. (brain)
SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)
SRR073954(GSM629280)
total RNA. (blood)
SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)
SRR037925(GSM510463)
e9p5_rep3. (embryo)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR553584(SRX182790)
source: Heart. (Heart)
GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)
SRR402766(SRX117949)
source: ES PGK female cells. (ESC)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)
GSM510456(GSM510456)
newborn_rep12. (total RNA)
SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)
SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)
SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)
SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)
SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)
GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)
SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)
SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)
SRR037914(GSM510451)
newborn_rep7. (total RNA)
SRR206940(GSM723281)
other. (brain)
SRR039610(GSM527274)
small RNA-Seq. (brain)
SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (salivary gland)
SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)
SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)
SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
mjTestesWT2()
Testes Data. (testes)
SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)
SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)
SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)
SRR037924(GSM510462)
e9p5_rep2. (embryo)
SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)
SRR206942(GSM723283)
other. (brain)
SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)
GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)
SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)
mjLiverKO3()
Liver Data. (Zcchc11 liver)
SRR038741(GSM527276)
small RNA-Seq. (brain)
SRR037912(GSM510449)
newborn_rep5. (total RNA)
SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)
SRR206939(GSM723280)
other. (brain)
SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)
SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)
SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR306535(GSM750578)
19-24nt. (ago2 brain)
SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)
SRR037929(GSM510467)
e7p5_rep3. (embryo)
SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)
SRR402761(SRX117944)
source: ES E14 male cells. (ESC)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
SRR306542(GSM750585)
19-24nt. (ago2 brain)
SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)
SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)
SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)
SRR059776(GSM562838)
MEF_Dicer. (MEF)
SRR014236(GSM319960)
10 dpp total. (testes)
SRR095855BC5(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)
GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)
GSM510453(GSM510453)
newborn_rep9. (total RNA)
SRR042453(GSM539845)
mouse marginal zone B cells (spleen) [09-002]. (b cell)
GSM510454(GSM510454)
newborn_rep10. (total RNA)
SRR042476(GSM539868)
mouse heart tissue [09-002]. (heart)
SRR037920(GSM510458)
e12p5_rep2. (embryo)
SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR306540(GSM750583)
19-24nt. (ago2 brain)
SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)
SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)
SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)
SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR306531(GSM750574)
19-24nt. (ago2 brain)
SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)
SRR038740(GSM527275)
small RNA-Seq. (dicer brain)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)
SRR306541(GSM750584)
19-24nt. (ago2 brain)
GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)
SRR042479(GSM539871)
mouse liver tissue [09-002]. (liver)
SRR037909(GSM510446)
newborn_rep2. (total RNA)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
SRR346415(SRX098256)
source: Testis. (Testes)
SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
mjLiverWT3()
Liver Data. (liver)
SRR059769(GSM562831)
Treg_Drosha. (spleen)
SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
mjTestesWT3()
Testes Data. (testes)
.....................................................................................CCTGCTCTACATAGAGAATTACATCCA.......................................................................................................................................... 27123.0023.00---11.00----6.00--------2.00-------------2.00-------------------------1.00------------------------------------------------------------------------1.00-----
....................................................................................CCCTGCTCTACATAGAGAATTACATCCA.......................................................................................................................................... 2814.004.00---1.00-------------1.00-------------2.00--------------------------------------------------------------------------------------------------------
.............................................................................GAGCCCACCCTGCTCTACATAGAGAATTA................................................................................................................................................ 2912.002.00---1.00----1.00-------------------------------------------------------------------------------------------------------------------------------
..................................................................................CACCCTGCTCTACATAGAGAATTACA.............................................................................................................................................. 2612.002.00---1.00----1.00-------------------------------------------------------------------------------------------------------------------------------
............................................................................TGAGCCCACCCTGCTCTACATAGAGAA................................................................................................................................................... 2712.002.00-----------------2.00----------------------------------------------------------------------------------------------------------------------
...............GGCATGTTGGTACACTGATTTTAGGACTTG............................................................................................................................................................................................................. 3012.002.00-------------------------------------------------------------2.00--------------------------------------------------------------------------
.................................................................................................................................................................................................GCCTTAGAGATCACCACAAAGAAAAA............................... 2611.001.00-------------------------------------1.00--------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................GGAAGAACCCTGATGAGT..... 181.000.00-------------------------------------------------------------------------------------1.00--------------------------------------------------
..........GGCCAGGCATGTTGGTACACTGATTTTA.................................................................................................................................................................................................................... 2811.001.00-------------------------------------1.00--------------------------------------------------------------------------------------------------
........................................................................................GCTCTACATAGAGAATTACATCCAGGGCTA.................................................................................................................................... 3011.001.00-------------------------------------1.00--------------------------------------------------------------------------------------------------
...................................................................................ACCCTGCTCTACATAGAGAATTACATCCA.......................................................................................................................................... 2911.001.00--------1.00-------------------------------------------------------------------------------------------------------------------------------
...............................................................................GCCCACCCTGCTCTACATAGAGAATTA................................................................................................................................................ 2711.001.00---1.00------------------------------------------------------------------------------------------------------------------------------------
..........................................................................TTTGAGCCCACCCTGCTCTACATAGA...................................................................................................................................................... 2611.001.00--------1.00-------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................TGTTTTGTTTGCCTTAGAGATCACCACAAA..................................... 3011.001.00-----------------------------------------------------------------------------------------------------1.00----------------------------------
....................................................GAGGCAGGCAGATCTCTCTGAGGAA............................................................................................................................................................................. 251.000.00-----------------------------------------------------------------------------1.00----------------------------------------------------------
.............................................................................GAGCCCACCCTGCTCTACGAG........................................................................................................................................................ 211.000.00--------------------------1.00-------------------------------------------------------------------------------------------------------------
..................................................................................CACCCTGCTCTACATAGAGAATTACATC............................................................................................................................................ 2811.001.00-----------------1.00----------------------------------------------------------------------------------------------------------------------
.................................................................................CCACCCTGCTCTACATAGAGAATTACA.............................................................................................................................................. 2711.001.00---1.00------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................CAGGGCTACATAAACGTGATTATGTCTAAA.............................................................................................................. 301.000.00--------------------------1.00-------------------------------------------------------------------------------------------------------------
......................................................................................CTGCTCTACATAGAGAATTACATCCA.......................................................................................................................................... 2611.001.00-------------------------------1.00--------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................CACAAAGAAAAAGAAA........................... 161.000.00-------------------------------------------------------------------------------------------------------------------1.00--------------------
..........................................................................TTTGAGCCCACCCTGCTCTACATAGAGA.................................................................................................................................................... 2811.001.00--------1.00-------------------------------------------------------------------------------------------------------------------------------
....................................................................................CCCTGCTCTACATAGAGAATTACATCCAG......................................................................................................................................... 2911.001.00-----------------1.00----------------------------------------------------------------------------------------------------------------------
.............................................................AGATCTCTCTGAGTTTGAGCC........................................................................................................................................................................ 2140.250.25----------------------0.25-----------------------------------------------------------------------------------------------------------------
..................................................................TCTCTGAGTTTGAGCCCAC..................................................................................................................................................................... 1950.200.20---------------------------------------------------------------------------------0.20------------------------------------------------------
...................................................................CTCTGAGTTTGAGCCCAC..................................................................................................................................................................... 1850.200.20-------------------------------------------------------------------------------------------------------------------------------------0.20--