ID: mmu-mir-7074
GENE: Slc12a4(7)
chr8:108475487-108475729-


(1)
AGO.mut
(1)
AGO1.ip
(4)
AGO2.ip
(1)
AGO3.ip
(3)
B-CELL
(8)
BRAIN
(2)
CELL-LINE
(1)
DGCR8.mut
(6)
EMBRYO
(9)
ESC
(6)
FIBROBLAST
(2)
HEART
(1)
KIDNEY
(5)
LIVER
(1)
LYMPH
(11)
OTHER
(2)
OTHER.mut
(1)
PIWI.mut
(3)
SKIN
(1)
SPLEEN
(7)
TESTES
(1)
THYMUS
(8)
TOTAL-RNA

Sense strand
TCCATTTACGCGGGAGGCATCAAGTCCATTTTTGACCCTCCCGTGTTTCCGTGAGTAACTAGGGCATTTGTTCCAGCCATTGCCCTGGCATCCTTTCTAAGCCTTTGGTGTTCTGTGTCCCTCTGATTGCTTGGGTGGGAAGAGGCTAGGGCTCCAGTCCAGCAGGTAACTAGGCCTTCTCCTCTCCCTGCAGGGTGTGTATGCTGGGCAATAGGACCCTGTCTCGGGACCAGTTTGACATCT
......................................................................................................................................(((((.(((((..((((((..(((((....))..))).))))))..))))).)))))....................................................
..................................................................................................................................131...........................................................193................................................
SizePerfect hitTotal NormPerfect NormmjTestesWT1()
Testes Data. (testes)
SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)
GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)
SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)
mjTestesWT3()
Testes Data. (testes)
SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)
SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)
GSM510444(GSM510444)
brain_rep5. (brain)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR073954(GSM629280)
total RNA. (blood)
SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)
SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)
mjLiverKO3()
Liver Data. (Zcchc11 liver)
GSM510453(GSM510453)
newborn_rep9. (total RNA)
SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)
SRR037912(GSM510449)
newborn_rep5. (total RNA)
SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)
SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)
SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)
SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)
SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)
SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)
SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)
SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)
SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)
SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
SRR553584(SRX182790)
source: Heart. (Heart)
SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
GSM510450(GSM510450)
newborn_rep6. (total RNA)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)
SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR095855BC6(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)
Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)
GSM640577(GSM640577)
small RNA in the liver with paternal control . (liver)
GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)
mjTestesWT2()
Testes Data. (testes)
SRR402761(SRX117944)
source: ES E14 male cells. (ESC)
SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)
GSM510456(GSM510456)
newborn_rep12. (total RNA)
SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)
SRR037914(GSM510451)
newborn_rep7. (total RNA)
SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)
SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)
GSM475281(GSM475281)
total RNA. (testes)
SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)
SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)
Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)
SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)
SRR073955(GSM629281)
total RNA. (blood)
GSM510452(GSM510452)
newborn_rep8. (total RNA)
SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)
SRR059766(GSM562828)
DN3_Drosha. (thymus)
SRR037909(GSM510446)
newborn_rep2. (total RNA)
SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR553582(SRX182788)
source: Brain. (Brain)
SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)
GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)
SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)
SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR037920(GSM510458)
e12p5_rep2. (embryo)
GSM510455(GSM510455)
newborn_rep11. (total RNA)
SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
..........................................................................................................................................................................TAGGCCTTCTCCTCTCCCTGCAG..................................................23151.0051.0010.002.004.001.003.00-2.002.001.00-2.00-3.00-1.00-1.002.001.00--2.00--1.00-2.00----2.00-2.00---------1.00-1.00-----1.00------------1.00--1.00-1.001.00---
..........................................................................................................................................................................TAGGCCTTCTCCTCTCCCTGCAGT.................................................24131.0051.00-6.003.002.004.00--1.00------2.003.00----1.00----2.00---------------------1.00-----1.00-1.00-1.00--1.00-1.00---1.00-------
..........................................................................................................................................................................TAGGCCTTCTCCTCTCCCTGCAGA.................................................2418.0051.00-----5.00---2.00----------------------------------1.00-----------------------------
..........................................................................................................................................................................TAGGCCTTCTCCTCTCCCTGCA...................................................2216.006.00------1.00-1.00-----------1.00-------2.00-------------1.00-------------------------------
.......................................................................................................................................TGGGAAGAGGCTAGGGCTCCAGT.....................................................................................2315.005.00-------------1.00--1.00--2.00--------------------------------------1.00---------------
..........................................................................................................................................................................TAGGCCTTCTCCTCTCCCTGCAA..................................................2314.006.00---1.00----1.001.00---------------------------------------------------1.00------------
..........................................................................................................................................................................TAGGCCTTCTCCTCTCCCTGCAT..................................................2313.006.00----------------------1.00-----------------------------1.00---------------1.00-----
.......................................................................................................................................................................................................TATGCTGGGCAATAGGACCC........................2013.003.00-----------3.00--------------------------------------------------------------
....................................................................................................................................................................................................................AGGACCCTGTCTCGGGACCAGT.........2213.003.00------1.00----------------------1.00--1.00-----------------------------------------
.....................................................................................................................................GGTGGGAAGAGGCTAGGGCTCCAGT.....................................................................................2512.002.00----------------1.00-------1.00-------------------------------------------------
..........................................................................................................................................................................TAGGCCTTCTCCTCTCCCTGCAGTA................................................2512.0051.00-------1.00--------------1.00---------------------------------------------------
..........................................................................................................................................................................TAGGCCTTCTCCTCTCCCTGCAGTAG...............................................2612.0051.00---1.00-------------------1.00--------------------------------------------------
............................................................................................................................................................................GGCCTTCTCCTCTCCCTGCAGA.................................................222.000.00-2.00------------------------------------------------------------------------
..........................................................................................................................................................................TAGGCCTTCTCCTCTCCCTGCAGAAA...............................................2612.0051.00----------------------------------2.00---------------------------------------
..................................................................................................................................TTGGGTGGGAAGAGGCTAGGGCT..........................................................................................2311.001.00-----------------------------------------1.00--------------------------------
..........................................................................................................................................................................TAGGCCTTCTCCTCTCCCTGT....................................................2111.001.00---1.00----------------------------------------------------------------------
.....................................................................................................................................GGTGGGAAGAGGCTAGGGCTCA........................................................................................221.000.00-------------1.00------------------------------------------------------------
............................................................................................................................................................GTCCAGCAGGTAACTGAGA....................................................................191.000.00--------------------------------------------------------1.00-----------------
...................................................................................................................................TGGGTGGGAAGAGGCTAGGGCTAA........................................................................................241.000.00---------------------------------------------------------------1.00----------
..........................................................................................................................................................................TAGGCCTTCTCCTCTCCCTTCAT..................................................231.000.00---------------------------1.00----------------------------------------------
...............................................................................................................................TGCTTGGGTGGGAAGAGGCTAGT.............................................................................................231.000.00--------------------------------------1.00-----------------------------------
...............................................................................................................................................................................CTTCTCCTCTCCCTGCAG..................................................1811.001.00--------------------------------1.00-----------------------------------------
..........................................................................................................................................................................TAGGCCTTCTCCTCTCCCTTTT...................................................221.000.00---1.00----------------------------------------------------------------------
.......ACGCGGGAGGCATCAAGTCC........................................................................................................................................................................................................................2011.001.00------------------------------------1.00-------------------------------------
.....................................................................................................................................GGTGGGAAGAGGCTAGGGCTCCAGTA....................................................................................2611.002.00-----------------------------------------------------------1.00--------------
...........................................................................................................................................................................AGGCCTTCTCCTCTCCCTGCA...................................................2111.001.00-----------------------------------------------------------------------1.00--
..........................................................................................................................................................................TAGGCCTTCTCCTCTCCCTGCAGCTT...............................................2611.0051.00----------1.00---------------------------------------------------------------
..........................................................................................................................................................................TAGGCCTTCTCCTCTCCCTG.....................................................2011.001.00------------------------------------------------1.00-------------------------
..........................................................................................................................................................................TAGGCCTTCTCCTCTCCCTGCAGTTT...............................................2611.0051.00-----------------------1.00--------------------------------------------------
..........................................................................................................................................................................TAGGCCTTCTCCTCTCCCTGCAGAC................................................2511.0051.00------1.00-------------------------------------------------------------------
....................................................................................................................................................................................................................AGGACCCTGTCTCGGGACCAGTT........2311.001.00-----------------------------1.00--------------------------------------------
............................................................................................................................................AGAGGCTAGGGCTCCGGT.....................................................................................181.000.00-------------------------------------------------1.00------------------------
..................................................................................................................................TTGGGTGGGAAGAGGCTAGGGCA..........................................................................................231.000.00------------------1.00-------------------------------------------------------
..........................................................................................................................................................................TAGGCCTTCTCCTCTCCCTGCC...................................................2211.001.00------------------------------1.00-------------------------------------------
............................................................................................................................................................................................TGCAGGGTGTGTATGGTTT....................................191.000.00----------------------------------------1.00---------------------------------
..........................................................................................................................................................................TAGGCCTTCTCCTCTCCCTGCCGT.................................................2411.001.00------------------------------1.00-------------------------------------------
...........................................................................................................................................................................AGGCCTTCTCCTCTCCCTGCACT.................................................2311.001.00---------------------------1.00----------------------------------------------
..........................................................................................................................................................................TAGGCCTTCTCCTCTCCCTGG....................................................2111.001.00---------------------------------------1.00----------------------------------
..........................................................................................................................................................................TAGGCCTTCTCCTCTCCCTGCAGTTTT..............................................2711.0051.00--------------------------------------------------1.00-----------------------
..........................................................................................................................................................................TAGGCCTTCTCCTCTCCCTGA....................................................2111.001.00----------------------------------------------1.00---------------------------
............................................................................................................................................AGAGGCTAGGGCTCCTTGA....................................................................................191.000.00------------------------------------------------------1.00-------------------
..........................................................................................................................................................................TAGGCCTTCTCCTCTCCCTGCAGAA................................................2511.0051.00-------------------------------------1.00------------------------------------
..........................................................................................................................................................................TAGGCCTTCTCCTCTCCCTGC....................................................2111.001.00-----------------------------------------------------------------1.00--------
................................TGACCCTCCCGTGTTTCC.................................................................................................................................................................................................1811.001.00------------------------------------------------------------------------1.00-

Antisense strand
TCCATTTACGCGGGAGGCATCAAGTCCATTTTTGACCCTCCCGTGTTTCCGTGAGTAACTAGGGCATTTGTTCCAGCCATTGCCCTGGCATCCTTTCTAAGCCTTTGGTGTTCTGTGTCCCTCTGATTGCTTGGGTGGGAAGAGGCTAGGGCTCCAGTCCAGCAGGTAACTAGGCCTTCTCCTCTCCCTGCAGGGTGTGTATGCTGGGCAATAGGACCCTGTCTCGGGACCAGTTTGACATCT
......................................................................................................................................(((((.(((((..((((((..(((((....))..))).))))))..))))).)))))....................................................
..................................................................................................................................131...........................................................193................................................
SizePerfect hitTotal NormPerfect NormmjTestesWT1()
Testes Data. (testes)
SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)
GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)
SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)
mjTestesWT3()
Testes Data. (testes)
SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)
SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)
GSM510444(GSM510444)
brain_rep5. (brain)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR073954(GSM629280)
total RNA. (blood)
SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)
SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)
mjLiverKO3()
Liver Data. (Zcchc11 liver)
GSM510453(GSM510453)
newborn_rep9. (total RNA)
SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)
SRR037912(GSM510449)
newborn_rep5. (total RNA)
SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)
SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)
SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)
SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)
SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)
SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)
SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)
SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)
SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)
SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
SRR553584(SRX182790)
source: Heart. (Heart)
SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
GSM510450(GSM510450)
newborn_rep6. (total RNA)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)
SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR095855BC6(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)
Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)
GSM640577(GSM640577)
small RNA in the liver with paternal control . (liver)
GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)
mjTestesWT2()
Testes Data. (testes)
SRR402761(SRX117944)
source: ES E14 male cells. (ESC)
SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)
GSM510456(GSM510456)
newborn_rep12. (total RNA)
SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)
SRR037914(GSM510451)
newborn_rep7. (total RNA)
SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)
SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)
GSM475281(GSM475281)
total RNA. (testes)
SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)
SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)
Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)
SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)
SRR073955(GSM629281)
total RNA. (blood)
GSM510452(GSM510452)
newborn_rep8. (total RNA)
SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)
SRR059766(GSM562828)
DN3_Drosha. (thymus)
SRR037909(GSM510446)
newborn_rep2. (total RNA)
SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)
SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR553582(SRX182788)
source: Brain. (Brain)
SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)
GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)
SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)
SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR037920(GSM510458)
e12p5_rep2. (embryo)
GSM510455(GSM510455)
newborn_rep11. (total RNA)
SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
.........................................................................................ATCCTTTCTAAGCCTCAC........................................................................................................................................ 181.000.00-----------------------------------1.00--------------------------------------
............................................................................................................TGTTCTGTGTCCCTCTGGGCA.................................................................................................................. 211.000.00-------------1.00------------------------------------------------------------
................GCATCAAGTCCATTTT................................................................................................................................................................................................................... 1630.330.33-------------------------------------------------------------------------0.33