ID: mmu-mir-7058
GENE: Lat(7)
chr7:133511435-133511609-


(5)
AGO1.ip 		(8)
AGO2.ip 		(1)
AGO3.ip 		(8)
B-CELL 		(5)
BRAIN 		(3)
EMBRYO 		(7)
ESC 		(1)
HEART 		(1)
KIDNEY 		(4)
LIVER 		(1)
LUNG 		(5)
LYMPH 		(22)
OTHER 		(1)
OTHER.ip 		(6)
OTHER.mut 		(6)
PIWI.ip 		(3)
PIWI.mut 		(4)
SKIN 		(11)
SPLEEN 		(1)
TDRD1.ip 		(28)
TESTES 		(4)
THYMUS

Sense strand
AAGAATGTGGATGCAGATGAGGATGAAGACGACTATCCCAACGGCTACCTGTGAGTGGGTAGAGGGGAGGTGACCGTGGAAGTTGTGTGCCCTTTATCAACTTCTCGTTCCTTCCTTTCTTCCAGAGTGGTGCTGCCTGACAGTAGTCCTGCTGCCGTCCCTGTTGTCTCCTCTG
.......................................................((((.((((((((((.((.((.((((((((............)))))))))).))))))))))))))))...................................................
..................................................51........................................................................125................................................
SizePerfect hitTotal NormPerfect NormSRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR059768(GSM562830)
Treg_control. (spleen)		SRR525244(SRA056111/SRX170320)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR525243(SRA056111/SRX170319)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR525241(SRA056111/SRX170317)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR525242(SRA056111/SRX170318)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (salivary gland)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR059771(GSM562833)
CD4_control. (spleen)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		mjTestesWT4()
Testes Data. (testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR073954(GSM629280)
total RNA. (blood)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR525239(SRA056111/SRX170315)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR553585(SRX182791)
source: Kidney. (Kidney)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR095855BC6(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR525238(SRA056111/SRX170314)
Second IgG control. (Blood)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR059773(GSM562835)
CD4_Dicer. (spleen)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		mjLiverWT3()
Liver Data. (liver)		SRR525240(SRA056111/SRX170316)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR525237(SRA056111/SRX170313)
Mus musculus domesticus miRNA sequencing. (Blood)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
...........................................................TAGAGGGGAGGTGACCGTGGAAGT............................................................................................241223.00223.0013.0052.008.0016.0018.007.0011.0010.0016.006.002.002.007.007.005.00-7.002.00-1.00--6.002.00-3.00-----1.00--1.001.00--3.00-------2.001.00----2.00-1.002.00-1.00----1.00------------1.001.00-------1.00------1.00--1.001.00--------
...........................................................TAGAGGGGAGGTGACCGTGGAAG.............................................................................................23185.0085.002.0016.007.006.004.005.004.004.002.003.002.002.001.001.003.00-1.002.00-2.00---1.005.001.001.00--3.00-1.00-------------1.00--1.00--1.00-1.00---------------1.00------------------------------1.00---
...........................................................TAGAGGGGAGGTGACCGTGGAAGTT...........................................................................................25141.0041.005.006.005.002.005.001.002.003.00-1.00-1.00-1.003.00--2.00-1.00----1.00--1.00---1.00------------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGA...............................................................................................21140.0040.0020.001.005.00----2.00-1.005.00-1.00-----1.00-------------------------1.00--1.00--------------------1.00-------------1.00---------------------
...........................................................TAGAGGGGAGGTGACCGTGGAA..............................................................................................22139.0039.0012.004.007.003.002.001.00---1.00--1.00---1.00------2.00---1.00------1.00--------------------------------------------------1.00---1.00--------1.00-----
...........................................................TAGAGGGGAGGTGACCGTGGAAA.............................................................................................23124.0039.002.003.00-1.001.002.00--2.00-2.004.00--1.00-1.00-1.002.00------1.00-------1.00---------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGAAT.............................................................................................23123.0039.008.002.001.00-1.00----2.002.00-1.001.001.00-1.00----------1.00---------1.00-------------------------------------------------------1.00----------
...........................................................TAGAGGGGAGGTGACCGTGGAAGTTT..........................................................................................26118.0041.004.001.001.002.002.00-3.00-----2.00-1.00----1.00------1.00-----------------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGAT..............................................................................................22112.0040.007.00---------1.001.00-----1.00--------1.00---------------------------------------------------------------1.00-------------
...........................................................TAGAGGGGAGGTGACCGTG.................................................................................................19111.0011.001.006.00---1.00------1.001.00---------1.00--------------------------------------------------------------------------------
.......................................................................................................CTCGTTCCTTCCTTTCTTCCAGT.................................................2319.001.006.00----------1.00-----1.00-------------------------------------------------1.00------------------------------------
...........................................................TAGAGGGGAGGTGACCGT..................................................................................................1819.009.00-1.00-2.00-1.00-2.00-1.00---1.00------------1.00-----------------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGAAAA............................................................................................2416.0039.00-1.00-2.00-1.00-----------------1.00-------------1.00------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGG................................................................................................2016.006.002.001.00--1.00----1.00-------------------1.00--------------------------------------------------------------------------
.....TGTGGATGCAGATGAGGATGAAGACG................................................................................................................................................2615.005.00---------------1.00----2.00----------------------1.00----------------------1.00-------------------------------------
............................................................AGAGGGGAGGTGACCGTGGAAGTT...........................................................................................2415.005.001.00--1.00-2.001.00-------------------------------------------------------------------------------------------------
...AATGTGGATGCAGATGAGGATGAAGAC.................................................................................................................................................2714.004.00----------------------------1.00-------------1.00------1.00---------------------------1.00--------------------------
...........................................................TAGAGGGGAGGTGACCGTGGATA.............................................................................................2314.0040.00---1.00-1.00---1.001.00---------------------------------------------------------------------------------------------
.......TGGATGCAGATGAGGATGAAGACGAC..............................................................................................................................................2614.004.00-1.00----------------------------------2.00----------------------1.00--------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGAAGTTGT.........................................................................................2714.004.003.00----------1.00--------------------------------------------------------------------------------------------
...........TGCAGATGAGGATGAAGACGACTATC..........................................................................................................................................2614.004.00---------------1.00-----2.00------1.00---------------------------------------------------------------------------
......................................................................................................TCTCGTTCCTTCCTTTCTTCCAGT.................................................243.000.002.00-------------------------------------------1.00-----------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGAAGTTA..........................................................................................2613.0041.00----1.00------1.00---------------1.00----------------------------------------------------------------------------
...........TGCAGATGAGGATGAAGACGACTAT...........................................................................................................................................2513.003.00---------------1.00-----------------------1.00-----------------------1.00----------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGAAGA............................................................................................2413.0085.00-2.00---------1.00--------------------------------------------------------------------------------------------
.......................................................................................................CTCGTTCCTTCCTTTCTTC.....................................................1913.003.003.00-------------------------------------------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGAAGTA...........................................................................................2513.00223.00-1.00--1.00----1.00----------------------------------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGAAGG............................................................................................2413.0085.00---2.00---1.00------------------------------------------------------------------------------------------------
.....TGTGGATGCAGATGAGGATGAAGACGA...............................................................................................................................................2713.003.00---------------2.00-----------------1.00----------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGAAGTTTT.........................................................................................2713.0041.00-1.00-----2.00------------------------------------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGAAGTAA..........................................................................................2613.00223.00-2.00-----------------------1.00------------------------------------------------------------------------------
......................................CAACGGCTACCTGTGAG........................................................................................................................1713.003.00-----------------------------------------2.00---------------------------------------------------------1.00----
............................................................AGAGGGGAGGTGACCGTGGAA..............................................................................................2113.003.002.00-----------------------------------------------------------1.00-------------------------------------------
.AGAATGTGGATGCAGATGAGGATGAAG...................................................................................................................................................2713.003.00--------------------1.001.00--------------1.00-------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGTAAG.............................................................................................2313.0011.00-----1.001.001.00------------------------------------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGAAAT............................................................................................2413.0039.00---1.001.00--------------1.00------------------------------------------------------------------------------------
............................................................AGAGGGGAGGTGACCGTGGAAGT............................................................................................2313.003.00---1.00----------------------------1.00--1.00--------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGTT..............................................................................................2212.006.001.00---------1.00---------------------------------------------------------------------------------------------
...........TGCAGATGAGGATGAAGACGACTATCC.........................................................................................................................................2712.002.00---------------1.00-----1.00----------------------------------------------------------------------------------
.................TGAGGATGAAGACGACTATCCCAACG....................................................................................................................................2612.002.00---------------1.00----1.00-----------------------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGAAGTTAT.........................................................................................2712.0041.001.00---1.00---------------------------------------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGAAGAAA..........................................................................................2612.0085.00-1.00-1.00----------------------------------------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGATAA............................................................................................2412.0040.00---1.00--------1.00-------------------------------------------------------------------------------------------
.......................................................................................................CTCGTTCCTTCCTTTCTTCCATT.................................................232.000.002.00-------------------------------------------------------------------------------------------------------
.....TGTGGATGCAGATGAGGATGAAGACGACT.............................................................................................................................................2912.002.00---------------1.00----1.00-----------------------------------------------------------------------------------
....................................................................................................CTTCTCGTTCCTTCCTTTCTTCC....................................................2312.002.002.00-------------------------------------------------------------------------------------------------------
...................................................................................................ACTTCTCGTTCCTTCCTTT.........................................................1912.002.002.00-------------------------------------------------------------------------------------------------------
.......................TGAAGACGACTATCCCAACGGCTACCT.............................................................................................................................2712.002.00----------------------------1.00------------------------------------------1.00--------------------------------
............................................................AGAGGGGAGGTGACCGTGGAAA.............................................................................................2212.003.00-1.00------------------------------------------------1.00-----------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGATT.............................................................................................2312.0040.00---------1.001.00---------------------------------------------------------------------------------------------
.......................TGAAGACGACTATCCCAACGGCTACCTA............................................................................................................................2812.002.00----------------------------1.00----------------------------------------------------------1.00----------------
...........................................................TAGAGGGGAGGTGACCGTTGA...............................................................................................2112.009.00--1.00------------------------------------------------------------------------------1.00----------------------
..............................................................AGGGGAGGTGACCGTGGAAGTT...........................................................................................2212.002.00-1.00----1.00-------------------------------------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGAC..............................................................................................2212.0040.00----------1.00------------------------------------------------------------------------1.00--------------------
........................................................................................................TCGTTCCTTCCTTTCTTCCAGT.................................................222.000.002.00-------------------------------------------------------------------------------------------------------
....ATGTGGATGCAGATGAGGATGAAGACG................................................................................................................................................2712.002.00---------------1.00-----------------1.00----------------------------------------------------------------------
.AGAATGTGGATGCAGATGAGGATGAAGA..................................................................................................................................................2812.002.00------1.00-----------------------1.00-------------------------------------------------------------------------
..............................................................AGGGGAGGTGACCGTGGAAGTTT..........................................................................................2312.002.00----1.00--------1.00------------------------------------------------------------------------------------------
.................TGAGGATGAAGACGACTA............................................................................................................................................1812.002.00------------------2.00-------------------------------------------------------------------------------------
............................................................AGAGGGGAGGTGACCGTGGAAG.............................................................................................2212.002.00-1.001.00-----------------------------------------------------------------------------------------------------
....................................................GAGTGGGTAGAGGGGAGGTGA......................................................................................................2112.002.00-----------------1.00--------------------------------------------------------------------1.00-----------------
.............................................................GAGGGGAGGTGACCGTGGAAGTTG..........................................................................................2412.002.00-----------1.00---------------------------------------1.00----------------------------------------------------
......GTGGATGCAGATGAGGATGAAGACGA...............................................................................................................................................2612.002.00--------1.00---------------------------------------------1.00-------------------------------------------------
....ATGTGGATGCAGATGAGGATGAAGAC.................................................................................................................................................2612.002.00-----1.00-------------------------------------------------------------------1.00------------------------------
................................................................................................................................................AGTCCTGCTGCCGTCGCCA............192.000.00-----------------------------------------------------1.00--------------------------1.00-----------------------
...............GATGAGGATGAAGACGACTTT...........................................................................................................................................2111.001.00------------------1.00-------------------------------------------------------------------------------------
.............................................................GAGGGGAGGTGACCGTGGAAGG............................................................................................2211.001.00----1.00---------------------------------------------------------------------------------------------------
...................................................................................................ACTTCTCGTTCCTTCCTTTCTTCCAGT.................................................271.000.001.00-------------------------------------------------------------------------------------------------------
..............AGATGAGGATGAAGACGACT.............................................................................................................................................2011.001.00------1.00-------------------------------------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGAAGTAT..........................................................................................2611.00223.00-1.00------------------------------------------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGCAGT............................................................................................2411.006.00----1.00---------------------------------------------------------------------------------------------------
............................................................AGAGGGGAGGTGACCGTGGAAGTGT..........................................................................................2511.003.00-----------------1.00--------------------------------------------------------------------------------------
......GTGGATGCAGATGAGGATGAAGACG................................................................................................................................................2511.001.00-----1.00--------------------------------------------------------------------------------------------------
...AATGTGGATGCAGATGAGGATGAAGACGA...............................................................................................................................................2911.001.00----------------------1.00---------------------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTTGAA..............................................................................................2211.009.00--1.00-----------------------------------------------------------------------------------------------------
......................ATGAAGACGACTATCCCAAC.....................................................................................................................................2011.001.00--------------------------------------------------------------------------1.00-----------------------------
...AATGTGGATGCAGATGAGGATGAAGA..................................................................................................................................................2611.001.00----------------1.00---------------------------------------------------------------------------------------
.............................................................GAGGGGAGGTGACCGTGGAAG.............................................................................................2111.001.00-1.00------------------------------------------------------------------------------------------------------
.....................................................AGTGGGTAGAGGGGAGGTGACCG...................................................................................................2311.001.00--------------------------------1.00-----------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGACGT............................................................................................2411.0040.00-----------------------------------1.00--------------------------------------------------------------------
.........................................................................CCGTGGAAGTTGTGTGCCCTTTA...............................................................................2311.001.00-----------------1.00--------------------------------------------------------------------------------------
..............AGATGAGGATGAAGACGA...............................................................................................................................................1821.001.00------0.500.50------------------------------------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGAAAAA...........................................................................................2511.0039.00-1.00------------------------------------------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGT................................................................................................2011.0011.001.00-------------------------------------------------------------------------------------------------------
...AATGTGGATGCAGATGAGGATGA.....................................................................................................................................................2311.001.00-------------1.00------------------------------------------------------------------------------------------
....................................................................................................CTTCTCGTTCCTTCCTTTCT.......................................................2011.001.00-----------1.00--------------------------------------------------------------------------------------------
.....TGTGGATGCAGATGAGGATGAAGAA.................................................................................................................................................251.000.00---------------1.00----------------------------------------------------------------------------------------
..........................................................GTAGAGGGGAGGTGACCGTGGA...............................................................................................2211.001.00-------------------------------------1.00------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGTTAA............................................................................................2411.006.00----1.00---------------------------------------------------------------------------------------------------
...............................................................GGGGAGGTGACCGTGGAAGTT...........................................................................................2111.001.00--------------------------------------------------1.00-----------------------------------------------------
.......................................................................................................CTCGTTCCTTCCTTTCTTCCATTT................................................241.000.00--1.00-----------------------------------------------------------------------------------------------------
..GAATGTGGATGCAGATGAGG.........................................................................................................................................................2011.001.00----------------------------------------------------------------1.00---------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGAAGGTT..........................................................................................2611.0085.00----1.00---------------------------------------------------------------------------------------------------
...................AGGATGAAGACGACTATCCCAACGGCT.................................................................................................................................2711.001.00------------------------------------------------------------------------------------------------1.00-------
.........................................................GGTAGAGGGGAGGTGCTG....................................................................................................181.000.00-------------------------------------------------------------1.00------------------------------------------
..GAATGTGGATGCAGATTT...........................................................................................................................................................181.000.00--------------------------------------------------------------------------------------------1.00-----------
............................................................AGAGGGGAGGTGACCGTGGAT..............................................................................................211.000.001.00-------------------------------------------------------------------------------------------------------
...........TGCAGATGAGGATGAAGACGACTA............................................................................................................................................2411.001.00--1.00-----------------------------------------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGAAGAT...........................................................................................2511.0085.00-------1.00------------------------------------------------------------------------------------------------
.AGAATGTGGATGCAGATGAGGATGA.....................................................................................................................................................2511.001.00--------------------1.00-----------------------------------------------------------------------------------
...............................................................................................................................................TAGTCCTGCTGCCGTCCCTGTTGTCTCACA..301.000.00-------------------------------------------------1.00------------------------------------------------------
...........TGCAGATGAGGATGAAGACGACTATT..........................................................................................................................................2611.003.00---1.00----------------------------------------------------------------------------------------------------
..........................................................GTAGAGGGGAGGTGACCGTGGAAGTT...........................................................................................2611.001.00--1.00-----------------------------------------------------------------------------------------------------
...................................................................................................ACTTCTCGTTCCTTCCTTTCTTC.....................................................2311.001.00--1.00-----------------------------------------------------------------------------------------------------
...............GATGAGGATGAAGACGACT.............................................................................................................................................1911.001.00-----1.00--------------------------------------------------------------------------------------------------
.................................TATCCCAACGGCTACCT.............................................................................................................................1711.001.00------------------------------------------------------------------------------------------------------1.00-
..................GAGGATGAAGACGACTAA...........................................................................................................................................181.000.00------------------1.00-------------------------------------------------------------------------------------
........GGATGCAGATGAGGATGAAGACT................................................................................................................................................2311.001.00-----------------------------------------------------------------1.00--------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGAAGGT...........................................................................................2511.0085.00---1.00----------------------------------------------------------------------------------------------------
.AGAATGTGGATGCAGATGA...........................................................................................................................................................1911.001.00------1.00-------------------------------------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGC...............................................................................................2111.006.00--1.00-----------------------------------------------------------------------------------------------------
............................................................AGAGGGGAGGTGACCGTGGAAGTTTT.........................................................................................2611.005.00-------------------1.00------------------------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGAAGTTTAT........................................................................................2811.0041.001.00-------------------------------------------------------------------------------------------------------
.............CAGATGAGGATGAAGACT................................................................................................................................................181.000.00-----1.00--------------------------------------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGT...............................................................................................2111.006.001.00-------------------------------------------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGGAG.............................................................................................2311.006.00---------1.00----------------------------------------------------------------------------------------------
............GCAGATGAGGATGAAGACA................................................................................................................................................191.000.00------------------1.00-------------------------------------------------------------------------------------
..GAATGTGGATGCAGATGAGGATGAAG...................................................................................................................................................2611.001.00---------------------1.00----------------------------------------------------------------------------------
..............................................................AGGGGAGGTGACCGTGGAAGT............................................................................................2111.001.00----1.00---------------------------------------------------------------------------------------------------
......GTGGATGCAGATGAGGATGAAGACGACT.............................................................................................................................................2811.001.00-----------------------------------------------------------------------------------------------------1.00--
...............................................................GGGGAGGTGACCGTGGAAGTTG..........................................................................................2211.001.00--1.00-----------------------------------------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGAG..............................................................................................2211.0040.00--1.00-----------------------------------------------------------------------------------------------------
.................................................TGTGAGTGGGTAGAGGGGAGGTGA......................................................................................................2411.001.00--------1.00-----------------------------------------------------------------------------------------------
.......................................................................................................CTCGTTCCTTCCTTTCTTCCAG..................................................2211.001.001.00-------------------------------------------------------------------------------------------------------
........GGATGCAGATGAGGATGAAGAC.................................................................................................................................................2211.001.00----------------------------------------------------------1.00---------------------------------------------
..GAATGTGGATGCAGATGAGGATGAAGA..................................................................................................................................................2711.001.00---------------1.00----------------------------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTTT................................................................................................2011.009.001.00-------------------------------------------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGAAGAA...........................................................................................2511.0085.00-----1.00--------------------------------------------------------------------------------------------------
......GTGGATGCAGATGAGGATGAAGAC.................................................................................................................................................2411.001.00-1.00------------------------------------------------------------------------------------------------------
..........................................................GTAGAGGGGAGGTGACCGTGG................................................................................................2111.001.00----------------1.00---------------------------------------------------------------------------------------
.....................................................................................................................................TGCCTGACAGTAGTCCTGCTGCCGTC................2611.001.00---------------------------------------1.00----------------------------------------------------------------
...................................................................................................ACTTCTCGTTCCTTCCTTTC........................................................2011.001.00-1.00------------------------------------------------------------------------------------------------------
....................................................................................................................................................CTGCTGCCGTCCCTGTTGTCTCCTCT.2611.001.00---------------------------------------1.00----------------------------------------------------------------
...............................................................................................................................................TAGTCCTGCTGCCGTCCCTGTTGTC.......2511.001.00-------------------------------------------1.00------------------------------------------------------------
.............................CGACTATCCCAACGGCTACC..............................................................................................................................2011.001.00----------------------------------------1.00---------------------------------------------------------------
....ATGTGGATGCAGATGAGGATGA.....................................................................................................................................................2211.001.00--------1.00-----------------------------------------------------------------------------------------------
....................................................................................................CTTCTCGTTCCTTCCTTTCTT......................................................2111.001.00----------1.00---------------------------------------------------------------------------------------------
................................................................................................................................................AGTCCTGCTGCCGTCGCC.............181.000.00--1.00-----------------------------------------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGGAA.............................................................................................2311.006.001.00-------------------------------------------------------------------------------------------------------
..GAATGTGGATGCAGATGAGGATGAAA...................................................................................................................................................261.000.00------------------------------------------1.00-------------------------------------------------------------
......................................................GTGGGTAGAGGGGAGGTGACCGTTGA...............................................................................................261.000.001.00-------------------------------------------------------------------------------------------------------
.....TGTGGATGCAGATGAGGATGAAGACGACTA............................................................................................................................................3011.001.00------------------------------1.00-------------------------------------------------------------------------
....................................................GAGTGGGTAGAGGGGAGGTGACCC...................................................................................................241.000.00------------------------------------------------1.00-------------------------------------------------------
............................................................AGAGGGGAGGTGACCGTGGAAGTTA..........................................................................................2511.005.00--------------------------------1.00-----------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCATGT................................................................................................201.000.001.00-------------------------------------------------------------------------------------------------------
..........ATGCAGATGAGGATGAAGAC.................................................................................................................................................2011.001.00------------------1.00-------------------------------------------------------------------------------------
.................................................................................................CAACTTCTCGTTCCTTCCTTTCTTCCAG..................................................2811.001.00--1.00-----------------------------------------------------------------------------------------------------
.......................TGAAGACGACTATCCCAACGGCTACCTAG...........................................................................................................................2911.002.00------------------------------------------------------------------------1.00-------------------------------
.......................................AACGGCTACCTGTGA.........................................................................................................................1511.001.00----------------------------------------------------------------------1.00---------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGAAGTTG..........................................................................................2611.001.00-1.00------------------------------------------------------------------------------------------------------
...................................................................................................ACTTCTCGTTCCTTCCTTTCT.......................................................2111.001.001.00-------------------------------------------------------------------------------------------------------
.....TGTGGATGCAGATGAGGATGAAGACGCCT.............................................................................................................................................2911.005.00---------------------------------1.00----------------------------------------------------------------------
..........................................................GTAGAGGGGAGGTGACCGTGGAAA.............................................................................................241.000.00-1.00------------------------------------------------------------------------------------------------------
..............AGATGAGGATGAAGACGAC..............................................................................................................................................1911.001.00------------------1.00-------------------------------------------------------------------------------------
..............AGATGAGGATGAAGAGTAG..............................................................................................................................................191.000.00--------------------------------------------------------1.00-----------------------------------------------
....ATGTGGATGCAGATGAGGATGAA....................................................................................................................................................2311.001.00-----1.00--------------------------------------------------------------------------------------------------
..............AGATGAGGATGAAGAGGT...............................................................................................................................................181.000.00--------------------------------------------------------1.00-----------------------------------------------
............................................................AGAGGGGAGGTGACCGTGGAAGTTAT.........................................................................................2611.005.00-------1.00------------------------------------------------------------------------------------------------
.......TGGATGCAGATGAGGATGAAGACGA...............................................................................................................................................2511.001.00--------------------1.00-----------------------------------------------------------------------------------
...........................................................TAGAGGGGAGGTGACCGTGGAATTT...........................................................................................2511.0039.00--1.00-----------------------------------------------------------------------------------------------------
...................................................................................................ACTTCTCGTTCCTTCCTTTCTT......................................................2211.001.00---------------------------------------------1.00----------------------------------------------------------
..........ATGCAGATGAGGATGAAGACGA...............................................................................................................................................2211.001.00--1.00-----------------------------------------------------------------------------------------------------
.......................................................................................................CTCGTTCCTTCCTTTCTTCCAGTT................................................2411.001.001.00-------------------------------------------------------------------------------------------------------
.....TGTGGATGCAGATGAGGATGAAG...................................................................................................................................................2320.500.50-0.50------------------------------------------------------------------------------------------------------
......GTGGATGCAGATGAGGATGA.....................................................................................................................................................2020.500.50------------------0.50-------------------------------------------------------------------------------------
.......TGGATGCAGATGAGGATGAAG...................................................................................................................................................2120.500.50------------------0.50-------------------------------------------------------------------------------------
........GGATGCAGATGAGGATGAA....................................................................................................................................................1920.500.50------0.50-------------------------------------------------------------------------------------------------
......GTGGATGCAGATGAGGATGAA....................................................................................................................................................2120.500.50-----0.50--------------------------------------------------------------------------------------------------
......GTGGATGCAGATGAGGATGAAGA..................................................................................................................................................2320.500.50------0.50-------------------------------------------------------------------------------------------------
...........TGCAGATGAGGATGAAGA..................................................................................................................................................1830.330.33------------------0.33-------------------------------------------------------------------------------------
......GTGGATGCAGATGAGGATG......................................................................................................................................................1930.330.33------0.33-------------------------------------------------------------------------------------------------
...............GATGAGGATGAAGACGA...............................................................................................................................................1740.250.25-------------------------------------------------------------------------------------------------------0.25
.................TGAGGATGAAGACGA...............................................................................................................................................15100.100.10---------------------------------------------------------0.10----------------------------------------------

Antisense strand
AAGAATGTGGATGCAGATGAGGATGAAGACGACTATCCCAACGGCTACCTGTGAGTGGGTAGAGGGGAGGTGACCGTGGAAGTTGTGTGCCCTTTATCAACTTCTCGTTCCTTCCTTTCTTCCAGAGTGGTGCTGCCTGACAGTAGTCCTGCTGCCGTCCCTGTTGTCTCCTCTG
.......................................................((((.((((((((((.((.((.((((((((............)))))))))).))))))))))))))))...................................................
..................................................51........................................................................125................................................
SizePerfect hitTotal NormPerfect NormSRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR059768(GSM562830)
Treg_control. (spleen)		SRR525244(SRA056111/SRX170320)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR525243(SRA056111/SRX170319)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR525241(SRA056111/SRX170317)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR525242(SRA056111/SRX170318)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (salivary gland)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR059771(GSM562833)
CD4_control. (spleen)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		mjTestesWT4()
Testes Data. (testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR073954(GSM629280)
total RNA. (blood)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR525239(SRA056111/SRX170315)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR346415(SRX098256)
source: Testis. (Testes)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR051939(GSM545783)
Mov10L1-associated piRNAs. (mov10L testes)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR553585(SRX182791)
source: Kidney. (Kidney)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR095855BC6(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR525238(SRA056111/SRX170314)
Second IgG control. (Blood)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR059773(GSM562835)
CD4_Dicer. (spleen)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		mjLiverWT3()
Liver Data. (liver)		SRR525240(SRA056111/SRX170316)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR525237(SRA056111/SRX170313)
Mus musculus domesticus miRNA sequencing. (Blood)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR069811(GSM610967)
small RNA sequencing; sample 3. (testes)
............................................................................................................................................CAGTAGTCCTGCTGCCGTCCCTGTT.......... 2511.001.00-----1.00--------------------------------------------------------------------------------------------------
..........................................................................................................GTTCCTTCCTTTCTTCCGGG................................................. 201.000.00----------------------------------------------------------------------------------------1.00---------------
..........................................................................................................GTTCCTTCCTTTCTTCG.................................................... 171.000.00-------------------------------------------------------------------------------------------------1.00------
...................................................................................................ACTTCTCGTTCCTTCATGC......................................................... 191.000.00-------------------------------------------------------------------------------1.00------------------------
..............................................................................................................................................GTAGTCCTGCTGCCGTCCC.............. 1911.001.00------1.00-------------------------------------------------------------------------------------------------
...............................................................................................................................................TAGTCCTGCTGCCGTCCC.............. 1811.001.00-----1.00--------------------------------------------------------------------------------------------------
.................................................................................................CAACTTCTCGTTCCTTCCTTTC........................................................ 2211.001.00--------1.00-----------------------------------------------------------------------------------------------