ID: mmu-mir-7057
GENE: Lrrk1(32)
chr7:73526503-73526752-


(2)
AGO1.ip 		(1)
AGO2.ip 		(5)
B-CELL 		(2)
BRAIN 		(3)
EMBRYO 		(2)
ESC 		(5)
FIBROBLAST 		(1)
HEART 		(2)
KIDNEY 		(1)
LIVER 		(1)
LUNG 		(1)
LYMPH 		(14)
OTHER 		(3)
OTHER.mut 		(4)
SPLEEN 		(3)
TESTES 		(2)
TOTAL-RNA 		(2)
UTERUS

Sense strand
AAAAAAAAAAACAGTGATGCTCAGTGGTGTCACGGTGGGATGGGAGGGGTCGTTGTCCTTTCAGATTTGGCCAGACACATGGACTGTGAAGAAATATGCAGAGAAAGGGGAAAGCCCATGACAATGGAGAATATCTTAAAGGGCCTGCAGGAGAGGACTCAAGTTGGAAAACGTTCTAATTTGATGTCTTTCTCCACCAGGATGAGCGTGTGTCTGCAGCGACATGACTAGGTGTCCGTGCTTCGGCCCA
................................................................................................................................................(((..((((((((((((((((((((....))))))))))).))))).))))..)))..................................................
..............................................................................................................................................143......................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR525240(SRA056111/SRX170316)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR065053(SRR065053)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR525239(SRA056111/SRX170315)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)
...................................................................................................................................................CAGGAGAGGACTCAAGTTAGA..................................................................................21134.001.0019.00-8.001.00--2.002.002.00---------------------------------------
...................................................................................................................................................CAGGAGAGGACTCAAGTTGGA..................................................................................21112.0012.00-5.00---1.00----1.00----------1.001.00--------1.00------------1.001.00--
................................................................................................................................................................................TAATTTGATGTCTTTCTCCACC....................................................2219.009.00-----2.00----1.00-------------1.00-----1.00--1.001.00------1.001.00-----
..................................................................................................................................................GCAGGAGAGGACTCAAGTTAGA..................................................................................229.000.002.00--3.002.00-----------------------1.00------1.00------------
..................................................................................................................................................GCAGGAGAGGACTCAAGTTGGA..................................................................................2215.005.00-2.00----------------1.00-1.00-1.00-------------------------
...................................................................................................................................................CAGGAGAGGACTCAAGTTAG...................................................................................2015.001.00--4.00------------1.00--------------------------------
.................................................................................................................................................TGCAGGAGAGGACTCAAGTTGGA..................................................................................2314.004.00-2.00-------------------1.00------------------------1.00-
.................................................................................................................................................TGCAGGAGAGGACTCAAGTTGG...................................................................................2214.004.00-1.00------------2.00--------------------------------1.00
.................................................................................................................................................TGCAGGAGAGGACTCAAGTTAGA..................................................................................2314.002.00---3.00---1.00----------------------------------------
.................................................................................................................................................TGCAGGAGAGGACTCAAGTTG....................................................................................2114.004.00-2.00----1.00-------------------------1.00---------------
...................................................................................................................................................CAGGAGAGGACTCAAGTTAGAA.................................................................................2213.001.00--1.00----1.00------------1.00---------------------------
..................................................................................................................................................GCAGGAGAGGACTCAAGTTGG...................................................................................2113.003.00-1.00-----------------1.00------------------1.00---------
................................................................................................................................................................................TAATTTGATGTCTTTCTCCACCA...................................................2312.002.00-----1.00-------1.00----------------------------------
................................................................................................................................................................................TAATTTGATGTCTTTCTCCAC.....................................................2112.002.00-----------------------1.00-------------------1.00----
................................................................................................................................................CTGCAGGAGAGGACTCAAGTT.....................................................................................2112.002.002.00-----------------------------------------------
..............................................................................ATGGACTGTGAAGAAGAG..........................................................................................................................................................182.000.00---------1.00-----------------------------1.00--------
.................................................................................................................................................TGCAGGAGAGGACTCAAGTTA....................................................................................2112.002.00----1.00---1.00---------------------------------------
................................................................................................................................................................................TAATTTGATGTCTTTCTCCACT....................................................2212.002.00----------------1.00---------1.00---------------------
..................................................................................................................................................GCAGGAGAGGACTCAAGTTAG...................................................................................212.000.00------1.00----1.00------------------------------------
.................................................................................................................................................TGCAGGAGAGGACTCAAGTT.....................................................................................2012.002.00------------2.00-----------------------------------
...............................................................................TGGACTGTGAAGAAATATTTAT.....................................................................................................................................................221.000.00----1.00-------------------------------------------
................................................................................................................................................................................................................................TGACTAGGTGTCCGTGCTTCGGCACA261.000.00---------------------------1.00--------------------
....................................................................................................................................................AGGAGAGGACTCAAGTTAGA..................................................................................201.000.00--1.00---------------------------------------------
...............................................................................TGGACTGTGAAGAAATATGTACC....................................................................................................................................................231.000.00-------------------1.00----------------------------
................................................................................................................................................................................TAATTTGATGTCTTTCTCCACCATT.................................................2511.002.00-----------------------1.00------------------------
...................................................................................................................................................CAGGAGAGGACTCAAGTTGG...................................................................................2011.001.00----------------1.00-------------------------------
..................................................................................................................................................................GTTGGAAAACGTTCTCC.......................................................................171.000.00-------------------------1.00----------------------
................................................................................................................................................................................TAATTTGATGTCTTTCTCCACCAT..................................................2411.002.00-----1.00------------------------------------------
................................................................................................................................................................................TAATTTGATGTCTTTCTCCA......................................................2011.001.00-1.00----------------------------------------------
.....................................................................................................................................................GGAGAGGACTCAAGTTGGA..................................................................................1911.001.00-------------1.00----------------------------------
...................................................................................................................................................CAGGAGAGGACTCAAGTT.....................................................................................1811.001.00----1.00-------------------------------------------
.................................................................................................................................................TGCAGGAGAGGACTCAAGTTGGAAA................................................................................2511.001.00-1.00----------------------------------------------
...............................................................................................................................................CCTGCAGGAGAGGACTCAAGTT.....................................................................................2211.001.00-------------------------------------1.00----------
...................................................................................................................................................CAGGAGAGGACTCAAGTTGGAA.................................................................................2211.001.00----------------------------------------1.00-------
...............................................................................TGGACTGTGAAGAAATATGTAT.....................................................................................................................................................221.000.00---1.00--------------------------------------------
...................................................................................................................................................CAGGAGAGGACTCAAGTTA....................................................................................1911.001.00-----------------1.00------------------------------
...................................................................................................................................................CAGGAGAGGACTCAAGTTGGAG.................................................................................2211.0012.00------------------1.00-----------------------------
...................................................................................................................................................CAGGAGAGGACTCAAGTTATA..................................................................................2111.001.00-----------1.00------------------------------------
.................................................................................................................................................TGCAGGAGAGGACTCAAGTTAG...................................................................................2211.002.00-----------------1.00------------------------------
..................................................................................................................................................GCAGGAGAGGACTCAAGTTAGAA.................................................................................231.000.00---------------1.00--------------------------------
....................................................................................................................................................AGGAGAGGACTCAAGTTGGGA.................................................................................211.000.00------------------------------------1.00-----------
....AAAAAAACAGTGATGCTTTTT.................................................................................................................................................................................................................................211.000.00-----------------------------1.00------------------
.......................................ATGGGAGGGGTCGT.....................................................................................................................................................................................................1430.330.33---------0.33--------------------------------------

Antisense strand
AAAAAAAAAAACAGTGATGCTCAGTGGTGTCACGGTGGGATGGGAGGGGTCGTTGTCCTTTCAGATTTGGCCAGACACATGGACTGTGAAGAAATATGCAGAGAAAGGGGAAAGCCCATGACAATGGAGAATATCTTAAAGGGCCTGCAGGAGAGGACTCAAGTTGGAAAACGTTCTAATTTGATGTCTTTCTCCACCAGGATGAGCGTGTGTCTGCAGCGACATGACTAGGTGTCCGTGCTTCGGCCCA
................................................................................................................................................(((..((((((((((((((((((((....))))))))))).))))).))))..)))..................................................
..............................................................................................................................................143......................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR525240(SRA056111/SRX170316)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR065053(SRR065053)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR553585(SRX182791)
source: Kidney. (Kidney)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR525239(SRA056111/SRX170315)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)
........................................................................AGACACATGGACTGTGACTT.............................................................................................................................................................. 201.000.00---------1.00--------------------------------------