ID: mmu-mir-7053
GENE: Pold1(15)
chr7:51793426-51793746-


(1)
AGO.mut 		(2)
AGO1.ip 		(8)
AGO2.ip 		(2)
AGO3.ip 		(11)
B-CELL 		(14)
BRAIN 		(4)
CELL-LINE 		(2)
DCR.mut 		(5)
EMBRYO 		(9)
ESC 		(4)
FIBROBLAST 		(2)
LIVER 		(4)
LYMPH 		(15)
OTHER 		(7)
OTHER.mut 		(2)
PIWI.ip 		(3)
PIWI.mut 		(4)
SKIN 		(6)
SPLEEN 		(22)
TESTES 		(3)
THYMUS

Sense strand
AATCTGTGCTACACCACGCTGCTCCGACCTGGGGCTGCCCAGAAGCTGGGGTATGCTGCCTTTATCTAGGCTGCCCCCCCCCCCAAGCCTCCCTGAGCCCTGGTTTCCGGACTTGAAAGATCAGGTCCAGGGAAATGAGAGTCAGGGATTTGATGGGCTGTGGATGCGGCAGATGGGGAGGCTGCAGCAGGTCCTGGGGGAGCTGGGGAAAGGCAGGCTACTGGGGAGCTGGGTAGTTCGGAAGCCCAGCCTCCTGTGTCTCCTTCCCCAGCCTTAAACCAGATGAGTTCATCAAGACACCCACTGGGGATGAGTTTGTGA
..........................................................................................................................................................................................................((((((.((((.((((.((.((((.(((((((.........))))))))))).))))))))))))))))..................................................
......................................................................................................................................................................................................199.....................................................................271................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		mjTestesWT2()
Testes Data. (testes)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR042460(GSM539852)
mouse neutrophil cells replicate 2 [09-002]. (blood)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR073954(GSM629280)
total RNA. (blood)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR206939(GSM723280)
other. (brain)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		GSM314559(GSM314559)
ESC dgcr8 (454). (ESC)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR306541(GSM750584)
19-24nt. (ago2 brain)
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAGT.................................................22167.005.0040.007.00-2.00--3.00-2.005.00--2.00----1.00------------1.00-----1.00-------------------1.00--1.00---------------------------------------1.00---
.........................................................................................................................................................................................................................................................CCTCCTGTGTCTCCTTCCCCAGT.................................................23120.004.002.005.00---------3.00-----1.001.00-----------------------------------2.00--1.00------------------------1.00-1.00---1.00----1.00--------1.00
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGG.................................................................................................21114.0014.00-------1.001.00-----------1.00-----------1.00----1.00---1.001.00----1.00-----1.00-------------1.00-1.00---------------1.00-1.00------------1.00--
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGGG................................................................................................22111.0011.001.00------1.00------------------1.001.00--------1.00----1.00------1.00---1.00--1.00------------------1.00-----------1.00----------------
.........................................................................................................................................................................................................................................................CCTCCTGTGTCTCCTTCCCCAGA.................................................23111.004.002.00----6.00------------1.00-----1.00---1.00--------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAGA.................................................2219.005.003.002.00-2.00-----------1.00------------1.00--------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAGC.................................................2219.009.007.00-------------------------------------------------------------------------------1.00---------------1.00------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGGA................................................................................................2217.0014.001.00------1.00-----------1.001.00-------------------------------1.00-----------------------------------------1.00---1.00----
..................................................................................................................GAAAGATCAGGTCCAGGGAAATGGGT.....................................................................................................................................................................................267.000.00----7.00--------------------------------------------------------------------------------------------------
..................................................................................................................GAAAGATCAGGTCCAGGG.............................................................................................................................................................................................1816.006.00--2.00------------2.00-----1.00-1.00-------------------------------------------------------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGGGA...............................................................................................2315.0011.00---1.00---1.00-------------------1.00----1.00-------------1.00--------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAG..................................................2115.005.005.00------------------------------------------------------------------------------------------------------
.........................................................................................................................................................TGGGCTGTGGATGCGGCAGATGGGG...............................................................................................................................................2514.004.00----------2.00-----------1.00---------------1.00----------------------------------------------------------------
.........................................................................................................................................................................................................................................................CCTCCTGTGTCTCCTTCCCCAG..................................................2214.004.00------2.00--------------------------1.00--------1.00------------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAGTA................................................2314.005.003.001.00-----------------------------------------------------------------------------------------------------
..................................................................................................................GAAAGATCAGGTCCAGGGAAATGAGA.....................................................................................................................................................................................2614.004.00--1.00------------1.00-1.00---------------------1.00---------------------------------------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGGGGAGCTGGGTAGTTCGGAAGCCCAGCCTCCTGTGTCTCCTTCCCCAGT.................................................694.000.00-------------4.00-----------------------------------------------------------------------------------------
..................................................................................................................GAAAGATCAGGTCCAGGGAAATGGGA.....................................................................................................................................................................................263.000.00--------------------------------------------------2.00---------------1.00------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAT..................................................2113.002.001.00---------------2.00--------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAGCA................................................2313.009.002.00-----------------1.00------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAGTAT...............................................2413.005.003.00------------------------------------------------------------------------------------------------------
....................................................................................................................................AAATGAGAGTCAGGGATTTGATGGGC...................................................................................................................................................................2613.003.00--1.00------------------1.00-1.00-------------------------------------------------------------------------------
.......................................................................................................................................................................................GCAGCAGGTCCTGGGTTCG.......................................................................................................................193.000.00-------------------2.00---------------------------------------------------------1.00-------------------------
....................................................................................................................................AAATGAGAGTCAGGGATTTGATGGG....................................................................................................................................................................2513.003.00--2.00------------------------------------1.00---------------------------------------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTG..................................................................................................2013.003.00--------------------------------------------1.00---------------1.00------------------1.00-----------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACT...................................................................................................1913.003.00--------------1.00------------------------------1.00----------------------------------------------1.00----------
.........................................................................................................................................................................................................................................................CCTCCTGTGTCTCCTTCCCCA...................................................2113.003.00-1.00----------------1.00-----1.00------------------------------------------------------------------------------
......................................................................................................................................................................................................................................GGGTAGTTCGGAAGCCCAG........................................................................1913.003.00----------------------------------2.00------------------------------------------------------------------1.00-
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGGT................................................................................................2212.0014.00-------------------------------------------2.00-----------------------------------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGGGGAGC............................................................................................2612.002.00--------1.00---------------------------------------1.00------------------------------------------------------
..................................................................................................................................................................................................................................................................................TAAACCAGATGAGTTCATCAAGACACCC...................2812.002.00------------2.00------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................CTGGGGAAAGGCAGGCTACT...................................................................................................2012.002.00--------------1.00-----------------------------------------------1.00----------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAA..................................................2112.002.001.001.00-----------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................AAACCAGATGAGTTCATCAAGAC.......................2312.002.00------------------------------------------------------------------------1.00------------------------1.00-----
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGGGG...............................................................................................2312.002.00-1.00-----1.00-----------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAGAAT...............................................2412.005.002.00------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAGAT................................................2312.005.001.001.00-----------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCA...................................................2012.002.001.00----------------------------------1.00-------------------------------------------------------------------
....................................................................................................................................AAATGAGAGTCAGGGATTTGATGGGCTG.................................................................................................................................................................2812.002.00-----------------1.00-----1.00-------------------------------------------------------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGA.................................................................................................2112.003.00----------------------------1.00----------------1.00---------------------------------------------------------
.........................................................................................................................................................TGGGCTGTGGATGCGGCAGATGG.................................................................................................................................................2312.002.00----------------2.00--------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAGTATA..............................................2511.005.001.00------------------------------------------------------------------------------------------------------
......................................................................................................................................................TGATGGGCTGTGGATGCGGCAGATGT.................................................................................................................................................261.000.00-----------------------------1.00-------------------------------------------------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGGGAT..............................................................................................2411.0011.00---------------------------------------------------1.00---------------------------------------------------
................................................................................................................................................................................................................AAAGGCAGGCTACTGGGTAGC............................................................................................211.000.00-----------------------------------1.00-------------------------------------------------------------------
.....................................................................................................................................................TTGATGGGCTGTGGATGCGGCAGATG..................................................................................................................................................2611.001.00-----------------------------1.00-------------------------------------------------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGGGGA..............................................................................................2411.001.00---1.00---------------------------------------------------------------------------------------------------
................................GGCTGCCCAGAAGCTGGA...............................................................................................................................................................................................................................................................................181.000.00-----------------------------------------------------------------------------------------1.00-------------
..................................................................................................................GAAAGATCAGGTCCAGGGAAATGAGAGTC..................................................................................................................................................................................2911.001.00--1.00----------------------------------------------------------------------------------------------------
.......................................................................................................................................................GATGGGCTGTGGATGCGGCAG.....................................................................................................................................................2111.001.00---------------------------------------------------------------------------1.00---------------------------
................................................................................................................................................................................................................AAAGGCAGGCTACTGGGGAGCT...........................................................................................2211.001.00-------------------------------------------------------------1.00-----------------------------------------
.........................................................................................................................................................................................................................................................................................GATGAGTTCATCAAGACACCCA..................2211.001.00--------------------------1.00----------------------------------------------------------------------------
..........................................................................................................................................................GGGCTGTGGATGCGGCAGATGGAAAA.............................................................................................................................................261.000.00-------------------------------------------------------------------------1.00-----------------------------
.......................................................................................................................................................................................GCAGCAGGTCCTGGGTTT........................................................................................................................181.000.00-------------------------------------1.00-----------------------------------------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGGAT...............................................................................................2311.0014.00--------------------1.00----------------------------------------------------------------------------------
..................................................................................................................GAAAGATCAGGTCCAGGGAAATT........................................................................................................................................................................................231.000.001.00------------------------------------------------------------------------------------------------------
.............................TGGGGCTGCCCAGAATTT..................................................................................................................................................................................................................................................................................181.000.00-----------------------------------------------------1.00-------------------------------------------------
.........................................................................................................................................................................................................................................TAGTTCGGAAGCCCAGC.......................................................................1711.001.00---1.00---------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCGAGT.................................................221.000.001.00------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................TGGGGGAGCTGGGGACTGT............................................................................................................191.000.00---------------------------------------------------------------------------------1.00---------------------
................................................................................................................................................................................................................AAAGGCAGGCTACTGGGGAA.............................................................................................201.000.00----------------------------------------1.00--------------------------------------------------------------
.........................................................................................................................................................................................................................................................CCTCCTGTGTCTCCTTCCCCACT.................................................2311.003.00------------------------1.00------------------------------------------------------------------------------
.................................................................................................................TGAAAGATCAGGTCCAGGGAAATGAG......................................................................................................................................................................................2611.001.00-------------------------1.00-----------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCATT.................................................2211.002.00-----------1.00-------------------------------------------------------------------------------------------
.......................................................................................................................................TGAGAGTCAGGGATTTGATGGGCTGT................................................................................................................................................................2611.001.00--1.00----------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................CCTCCTGTGTCTCCTTCCCCAGAG................................................2411.004.00--------1.00----------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................................................................................GAGTTCATCAAGACAGAGT..................191.000.00-------------------------------1.00-----------------------------------------------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGT.................................................................................................2111.003.00---------------------------------------------------------------1.00---------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCC....................................................1911.001.00-------------------------------------------------1.00-----------------------------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGGAG...............................................................................................2311.0014.00-------------------1.00-----------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCATAA................................................2311.002.00------1.00------------------------------------------------------------------------------------------------
.....................................................................................................................................AATGAGAGTCAGGGATTTGATGGGC...................................................................................................................................................................2511.001.00----------1.00--------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGGGGCA.............................................................................................2511.002.00--------------1.00----------------------------------------------------------------------------------------
.................................................................................................................TGAAAGATCAGGTCCAGGGAAATGAGA.....................................................................................................................................................................................2711.001.00------------------------------------------------------------------------------------------1.00------------
.....................................................................................................................................AATGAGAGTCAGGGATTTGATGGGCT..................................................................................................................................................................2611.001.00--------------------------1.00----------------------------------------------------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGGGGAG.............................................................................................2511.001.00----------1.00--------------------------------------------------------------------------------------------
.......................................................................................................................................................GATGGGCTGTGGATGCGGCAGATGG.................................................................................................................................................2511.001.00-------------------------------------------------------------------------------------------1.00-----------
.........................................................................................................................................................................................................................................................CCTCCTGTGTCTCCTTCCCCAGC.................................................2311.001.00-----------------------------------------------------------------1.00-------------------------------------
................................................................................................................................................................................................................AAAGGCAGGCTACTGGGGAGCTGG.........................................................................................2411.001.001.00------------------------------------------------------------------------------------------------------
...................................................................................................................................GAAATGAGAGTCAGGGATTTGATGGGC...................................................................................................................................................................2711.001.00--1.00----------------------------------------------------------------------------------------------------
....................................GCCCAGAAGCTGGGGGCA...........................................................................................................................................................................................................................................................................181.000.00-------------------------------1.00-----------------------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAGATT...............................................2411.005.001.00------------------------------------------------------------------------------------------------------
....................................................................................................................................AAATGAGAGTCAGGGATTTGATGGGG...................................................................................................................................................................2611.003.00-------------------------1.00-----------------------------------------------------------------------------
............................................................................................................................................................................................................GGGGAAAGGCAGGCTACTGGGGAGCT...........................................................................................2611.001.00------------------------------1.00------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAAT.................................................2211.002.001.00------------------------------------------------------------------------------------------------------
.......................CCGACCTGGGGCTGCC..........................................................................................................................................................................................................................................................................................1611.001.00-1.00-----------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................GAAAGGCAGGCTACTGGGGAGCTAA.........................................................................................251.000.00-----------------------------------------------------------------------------------1.00-------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAGTTT...............................................2411.005.001.00------------------------------------------------------------------------------------------------------
....................................................................................................................................................TTTGATGGGCTGTGGATGCGGCAGATG..................................................................................................................................................2711.001.00---------------------1.00---------------------------------------------------------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTAATG..................................................................................................201.000.00----------------------------------------1.00--------------------------------------------------------------
.........................................................................................TCCCTGAGCCCTGGTTTCCGGA..................................................................................................................................................................................................................2211.001.00---------------------------------1.00---------------------------------------------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGGAA...............................................................................................2311.0014.00----------------------------------------------1.00--------------------------------------------------------
.................................................................................................................TGAAAGATCAGGTCCAGGGAAATGAGAGT...................................................................................................................................................................................2911.001.00----------------------------------------------------------------1.00--------------------------------------
...............................................................................................................................................................GTGGATGCGGCAGATGGGGAGGCT..........................................................................................................................................2411.001.00------------------------------1.00------------------------------------------------------------------------
......................................................................................................................................................TGATGGGCTGTGGATGCGGCAGAAGTA................................................................................................................................................271.000.00----------------------------------------------------------1.00--------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCGG..................................................2111.001.00--------------------------------------------------------------------1.00----------------------------------
........................CGACCTGGGGCTGCCC.........................................................................................................................................................................................................................................................................................1611.001.00-----------------------------------------------------------------------------------------------1.00-------
.......................................................................................................................................................................................GCAGCAGGTCCTGGGGGCCA......................................................................................................................201.000.00------------------------------------------------------------------------------1.00------------------------
...........................CCTGGGGCTGCCCAGAAGCTG.................................................................................................................................................................................................................................................................................2111.001.00----------------------1.00--------------------------------------------------------------------------------
..........................................................................................................................................................................................................CTGGGGAAAGGCAGGCTACTGG.................................................................................................2211.001.00-------1.00-----------------------------------------------------------------------------------------------
.....................................................................................................................................................TTGATGGGCTGTGGATGCGGCAGATGG.................................................................................................................................................2711.001.00--------------------------------------1.00----------------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAGCAA...............................................2411.009.001.00------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................CCTCCTGTGTCTCCTTCCCCAGTGAT..............................................2611.004.001.00------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGGC................................................................................................2211.0014.00---------------------------1.00---------------------------------------------------------------------------
...............................................................................................................................................................................................................GAAAGGCAGGCTACTGGGGAGC............................................................................................2211.001.00--------------1.00----------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................CCTTAAACCAGATGAGTTCATCAAGA........................2611.001.00---1.00---------------------------------------------------------------------------------------------------
....................................................................................................................................................TTTGATGGGCTGTGGATGCGGCAGAT...................................................................................................................................................2611.001.00-----------------------------1.00-------------------------------------------------------------------------
...........................................................................................................................................................................................................TGGGGAAAGGCAGGCTACTGGATT..............................................................................................2411.0014.00--------------------------------------------1.00----------------------------------------------------------
.........................................................................................................................................................TGGGCTGTGGATGCGGCAGATGGGGAG.............................................................................................................................................2711.001.00----------1.00--------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAGAG................................................2311.005.00-----------------------------------------------1.00-------------------------------------------------------
..........................................................................................................................................................................................................................................................CTCCTGTGTCTCCTTCCCCAGTAA...............................................2411.005.001.00------------------------------------------------------------------------------------------------------
.......................CCGACCTGGGGCTGCCCA........................................................................................................................................................................................................................................................................................1811.001.00----------------------1.00--------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................CCTCCTGTGTCTCCTTCCCCATTT................................................2411.003.00-----------1.00-------------------------------------------------------------------------------------------
................................................................................................................................................................TGGATGCGGCAGATGGGGAGGATGT........................................................................................................................................251.000.00-------------------------1.00-----------------------------------------------------------------------------
..............................................................................................................................................CAGGGATTTGATGGGCTGTGGATGC..........................................................................................................................................................2511.001.00----------------------------------------------------------------------1.00--------------------------------

Antisense strand
AATCTGTGCTACACCACGCTGCTCCGACCTGGGGCTGCCCAGAAGCTGGGGTATGCTGCCTTTATCTAGGCTGCCCCCCCCCCCAAGCCTCCCTGAGCCCTGGTTTCCGGACTTGAAAGATCAGGTCCAGGGAAATGAGAGTCAGGGATTTGATGGGCTGTGGATGCGGCAGATGGGGAGGCTGCAGCAGGTCCTGGGGGAGCTGGGGAAAGGCAGGCTACTGGGGAGCTGGGTAGTTCGGAAGCCCAGCCTCCTGTGTCTCCTTCCCCAGCCTTAAACCAGATGAGTTCATCAAGACACCCACTGGGGATGAGTTTGTGA
..........................................................................................................................................................................................................((((((.((((.((((.((.((((.(((((((.........))))))))))).))))))))))))))))..................................................
......................................................................................................................................................................................................199.....................................................................271................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		mjTestesWT2()
Testes Data. (testes)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR042460(GSM539852)
mouse neutrophil cells replicate 2 [09-002]. (blood)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR014236(GSM319960)
10 dpp total. (testes)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR073954(GSM629280)
total RNA. (blood)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR553603(SRX182809)
source: Spermatids. (Spermatids)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR206939(GSM723280)
other. (brain)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		GSM314559(GSM314559)
ESC dgcr8 (454). (ESC)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		SRR306541(GSM750584)
19-24nt. (ago2 brain)
..................................................................................CCAAGCCTCCCTGAGCG.............................................................................................................................................................................................................................. 171.000.00-------------------------------------------------1.00-----------------------------------------------------
................................................................................................GCCCTGGTTTCCGGACGG............................................................................................................................................................................................................... 181.000.00-----------------------------------------------------------------------1.00-------------------------------
...................................................................................................................................................................................................................................................................CTCCTTCCCCAGCCTCGAC........................................... 191.000.00----------------------------------------------------------------------------1.00--------------------------
..........................................................................................CCCTGAGCCCTGGTTCGC..................................................................................................................................................................................................................... 181.000.00---------------------------------------------------1.00---------------------------------------------------
....................................................................................................................................................................................................................................................................TCCTTCCCCAGCCTTA............................................. 1630.330.33-------------------------------0.33-----------------------------------------------------------------------