ID: mmu-mir-7043
GENE: Rassf4(6)
chr6:116595946-116596195-


(1)
AGO.mut
(2)
AGO1.ip
(6)
AGO2.ip
(1)
AGO3.ip
(9)
B-CELL
(30)
BRAIN
(1)
CELL-LINE
(1)
DCR.mut
(2)
DGCR8.mut
(10)
EMBRYO
(4)
ESC
(13)
HEART
(3)
KIDNEY
(19)
LIVER
(1)
LUNG
(21)
OTHER
(8)
OTHER.mut
(1)
OVARY
(3)
PANCREAS
(2)
PIWI.ip
(1)
PIWI.mut
(2)
SKIN
(4)
SPLEEN
(29)
TESTES
(3)
TOTAL-RNA
(3)
UTERUS

Sense strand
TGTGATTCATCTCAGAACAGTTACCCGTTCTAAGGGATAGCTTCCACTCCTTCCAACAGATGCTGTGGGGAGCTTTCTACTATACTGATAAAATTCACCACACTCAGCCCTTGGGCTCCTCACTTGTGTCCTGCCTGTGAAAGCAGAGAGGCATTTTTCTCTGTCGCAGCTACTTGAGTACTGTGCCTCTCTGTTTTCAGAAAGGAAGCTTCACCCCAGGACAGCAAGGTCCCCACTGAAGAGCCTGGCA
.........................................................................................................................................(((((((((((((((((....(((..............)))....)))))))))))))))))...................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormmjLiverWT1()
Liver Data. (liver)
SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)
mjLiverKO1()
Liver Data. (Zcchc11 liver)
mjLiverWT3()
Liver Data. (liver)
mjTestesWT4()
Testes Data. (testes)
SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)
SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)
mjTestesWT1()
Testes Data. (testes)
mjLiverKO2()
Liver Data. (Zcchc11 liver)
mjLiverKO3()
Liver Data. (Zcchc11 liver)
SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)
mjLiverWT2()
Liver Data. (liver)
SRR553584(SRX182790)
source: Heart. (Heart)
SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)
SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR553582(SRX182788)
source: Brain. (Brain)
SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)
SRR553585(SRX182791)
source: Kidney. (Kidney)
SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR206940(GSM723281)
other. (brain)
SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)
SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)
SRR095855BC8(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesWT3()
Testes Data. (testes)
SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)
SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)
SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR525244(SRA056111/SRX170320)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)
SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)
SRR065053(SRR065053)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR095855BC5(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)
SRR206942(GSM723283)
other. (brain)
SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)
SRR095855BC1(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR206939(GSM723280)
other. (brain)
mjTestesWT2()
Testes Data. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)
SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)
SRR059770(GSM562832)
Treg_Dicer. (spleen)
SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)
SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)
SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)
SRR060845(GSM561991)
total RNA. (brain)
SRR206941(GSM723282)
other. (brain)
SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)
SRR095855BC2(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR037921(GSM510459)
e12p5_rep3. (embryo)
SRR095855BC10(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR065045(SRR065045)
Tissue-specific Regulation of Mouse MicroRNA . (liver)
SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)
SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)
GSM510456(GSM510456)
newborn_rep12. (total RNA)
SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)
SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)
GSM361395(GSM361395)
CGNP_P6_wt_rep2. (brain)
SRR525239(SRA056111/SRX170315)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)
SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR346415(SRX098256)
source: Testis. (Testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
GSM361402(GSM361402)
CGNP_P6_p53--_Ink4c--_rep5. (brain)
GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)
SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)
SRR038741(GSM527276)
small RNA-Seq. (brain)
SRR065047(SRR065047)
Tissue-specific Regulation of Mouse MicroRNA . (liver)
SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)
SRR037906(GSM510442)
brain_rep3. (brain)
GSM510444(GSM510444)
brain_rep5. (brain)
SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)
SRR069834(GSM304914)
Analysis of small RNAs in murine neutrophils cultured in vitro by Solexa/Illumina genome analyzer. (blood)
SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)
SRR037898(GSM510434)
ovary_rep3. (ovary)
SRR039610(GSM527274)
small RNA-Seq. (brain)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)
GSM361408(GSM361408)
WholeCerebellum_P6_wt_rep1. (brain)
GSM361399(GSM361399)
CGNP_P6_p53--_Ink4c--_rep2. (brain)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR095855BC6(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR095855BC3(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
GSM361394(GSM361394)
CGNP_P6_wt_rep1. (brain)
SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)
SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR037920(GSM510458)
e12p5_rep2. (embryo)
GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)
SRR363958(GSM822760)
Adult-WTSmall RNA Miwi IP. (testes)
Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)
SRR014231(GSM319955)
16.5 dpc total. (testes)
GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)
SRR037912(GSM510449)
newborn_rep5. (total RNA)
SRR095855BC9(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR306540(GSM750583)
19-24nt. (ago2 brain)
SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)
SRR038740(GSM527275)
small RNA-Seq. (dicer brain)
SRR077864(GSM637801)
18-30 nt small RNAs. (liver)
SRR038744(GSM527279)
small RNA-Seq. (brain)
SRR037900(GSM510436)
testes_rep1. (testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
SRR037901(GSM510437)
testes_rep2. (testes)
SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)
SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR042485(GSM539877)
mouse testicular tissue [09-002]. (testes)
SRR037903(GSM510439)
testes_rep4. (testes)
GSM640576(GSM640576)
small RNA in the liver with paternal low prot. (liver)
SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)
GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)
GSM361430(GSM361430)
WholeCerebellum_1month_Ptc+-_Ink4c--_rep2. (brain)
SRR059769(GSM562831)
Treg_Drosha. (spleen)
SRR306537(GSM750580)
19-24nt. (ago2 brain)
GSM509276(GSM509276)
small RNA cloning by length. (testes)
SRR073954(GSM629280)
total RNA. (blood)
SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)
SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)
Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
SRR525243(SRA056111/SRX170319)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)
SRR042481(GSM539873)
mouse pancreatic tissue [09-002]. (pancreas)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR077866(GSM637803)
18-30 nt small RNAs. (liver)
SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)
SRR095855BC4(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR065048(SRR065048)
Tissue-specific Regulation of Mouse MicroRNA . (liver)
SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)
SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR525241(SRA056111/SRX170317)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)
SRR037922(GSM510460)
e12p5_rep4. (embryo)
GSM510453(GSM510453)
newborn_rep9. (total RNA)
SRR042453(GSM539845)
mouse marginal zone B cells (spleen) [09-002]. (b cell)
SRR095853(SRX039174)
sequencing of miRNA from wild type and diseas. (heart)
SRR525242(SRA056111/SRX170318)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)
SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)
SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCAGT.................................................221480.0065.0036.0037.0046.003.006.0028.0030.0023.00-5.0013.00-13.0012.0011.009.009.005.007.0013.0010.0010.007.006.005.00-7.005.003.00-7.003.00-5.003.004.001.001.004.004.002.004.00-3.001.001.00--4.00-3.003.003.003.001.003.003.001.003.001.00-3.002.001.00--3.00-1.001.001.00--1.00-2.002.001.001.002.002.002.001.00-1.002.00-----2.001.002.00--1.00--2.00----1.001.001.00--1.00----1.00---1.00------1.00-----------1.00--1.00--1.00-1.00--1.00---1.00---
..................................................................................................................................................................................TACTGTGCCTCTCTGTTTTCAGT.................................................231126.0023.00-7.006.001.008.006.005.007.0015.00-5.0017.003.001.004.001.006.00-6.00-2.001.003.002.00-1.00-3.00----1.00-1.00--2.001.00--1.00--1.001.00------------------1.00-----1.00----1.00------1.00-------------------1.00-------1.00---------1.00---1.00-------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCAGA.................................................221120.00120.0025.004.006.0043.009.001.00---2.001.00----5.001.001.00-----2.003.005.00---3.00---1.00---1.00--------------1.00----2.00-1.00----------------------------2.00-----------1.00-------------------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCAG..................................................21165.0065.0012.0012.0012.00--2.004.00-----1.004.00---3.001.00---1.00----1.00----3.00-------2.00--------------1.00------------1.00----1.00----1.00------------------1.00---------------------------------1.00--------------1.00---------
..................................................................................................................................................................................TACTGTGCCTCTCTGTTTTCAGA.................................................23151.0051.002.003.00-2.0011.001.001.004.0019.001.00-----1.00-----1.00-------1.00------------1.00------1.00----------1.00------------------------------------1.00----------------------------------------------------------
..................................................................................................................................................................................TACTGTGCCTCTCTGTTTTCAG..................................................22123.0023.00-1.00--4.004.001.00--1.00------1.00------------1.00------1.001.00-1.00-------1.00-2.00----1.00-------------------------------------1.00-----1.00------------------1.00--------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCA...................................................20114.0014.00-4.00---1.00-------------------2.00-----------------------1.00-------------2.00-------------------------------2.00----1.00-----------1.00-------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCAGTA................................................23113.0065.00----6.002.00---1.001.00-------1.00-----------------------------------------1.00---------------------------------------------------------------------------------1.00-------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCAGAA................................................23112.0012.00-4.00-1.00-----4.00----1.00-----------------1.00---------------------1.00-----------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTACTGTGCCTCTCTGTTTTCAGT.................................................24112.003.00-----1.00-7.00------1.00------1.00--------------------1.00-----------------------------------------1.00-----------------------------------------------------------------------
..................................................................................................................................................................................TACTGTGCCTCTCTGTTTTCA...................................................21111.0011.00-3.00-4.00-----1.00-------1.00------1.00---------1.00-------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TGTGAAAGCAGAGAGGCATTTTT............................................................................................2319.009.00-1.00---------------------------------------------------------1.00-----------------------2.00---1.00----------1.00-----------------------------1.00---1.00--------1.00--------------
.......................................................................................................................................TGTGAAAGCAGAGAGGCATTTTTC...........................................................................................2418.008.00----------------------------2.001.00------2.00----------1.00-----1.00-------------------------------------------------1.00----------------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCAGAGT...............................................2418.00120.008.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTACTGTGCCTCTCTGTTTTC....................................................2117.007.00---2.00--1.00---------------------------------1.00----------------------------2.00---1.00----------------------------------------------------------------------------------
.......................................................................................................................................TGTGAAAGCAGAGAGGCATTTT.............................................................................................2217.007.00-----1.00----------------------------1.00---------1.00-1.00-------------------------------------------------------------1.00----------1.00----------------1.00-------------------
.................................................................................................................................................................................GTACTGTGCCTCTCTGTTTTCA...................................................2217.007.00-2.00----1.00----------------------1.00------------------------1.00-----------------------------------------1.00-------------------------------------1.00---------------------
.................................................................................................................................................................................GTACTGTGCCTCTCTGTTTT.....................................................2015.005.004.00-------------------------------------------1.00---------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TACTGTGCCTCTCTGTTTTCAGTT................................................2415.0023.005.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGAAAGCAGAGAGGCATTTTT............................................................................................2115.005.005.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TACTGTGCCTCTCTGTTTTCAGAA................................................2415.005.00-1.00--4.00-------------------------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................GTGAAAGCAGAGAGGCATTTTT............................................................................................2214.004.00-----1.00----------------------------------------1.00------------------------------1.00-------------------------------------------------1.00----------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCAGTTT...............................................2414.0065.00---------------------------------------------2.00----------------1.00--------------------------------------------------------------------------------------1.00------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCAT..................................................2114.0014.00-1.00-------1.00-------1.00-------------1.00----------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCATT.................................................2214.0014.00-1.00---------------1.00-----------------------------1.00---------------------------------------------------------------------------------------1.00--------------------
....................................................................................................................................................................................CTGTGCCTCTCTGTTTTCAGT.................................................213.000.00---------2.00---------1.00----------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCAGAG................................................2313.00120.00--3.00---------------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTACTGTGCCTCTCTGTTTTCAG..................................................2313.003.00---------1.00---------------------1.00----------1.00-----------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCAGC.................................................2213.0065.00-----1.00------------------------------------1.00---------------------------1.00-------------------------------------------------------------------------------------
..................................................................................................................................................................................TACTGTGCCTCTCTGTTTTCACC.................................................2312.0011.00----------------------------2.00-------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TGTGAAAGCAGAGAGGCATTTTTT...........................................................................................2412.009.00--------------------------------1.00---------------------------1.00-----------------------------------------------------------------------------------------------
.........................................................................................................................................TGAAAGCAGAGAGGCATTTTTCTC.........................................................................................2412.002.00------------------------------------1.00----------------------------------------------------------------------1.00------------------------------------------------
..................................................................................................................................................................................TACTGTGCCTCTCTGTTTTCAGTA................................................2412.0023.00------------1.00------------------------------1.00----------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCAGAAA...............................................2412.002.00-----------------1.00---------------------------------1.00--------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TACTGTGCCTCTCTGTTTTAAGT.................................................232.000.00-----------2.00------------------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................CTGTGAAAGCAGAGAGGCATTTT.............................................................................................2312.002.00-----------------------------------1.00-------------------------------------------------------------------------------------------------------------------1.00----
........................................................................................................................................GTGAAAGCAGAGAGGCATTTTTC...........................................................................................2312.002.00-----1.00-------------------------------------------------------------------------------------------------------------1.00----------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCAGAT................................................2312.00120.00-------------1.00-----------1.00----------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................TGTGCCTCTCTGTTTAAC...................................................182.000.00--------------------------------------------------------------------------2.00---------------------------------------------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTC....................................................1912.002.00-----1.00---------------------------------------------------------------------------------------------------------------------------------------------1.00--------
......................................................................................................................................................................................GTGCCTCTCTGTTTTCAGT.................................................191.000.00------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCAGG.................................................2211.0065.00---1.00--------------------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TGTGAAAGCAGAGAGGCATTTTA............................................................................................2311.007.00---------------------------------------------------------------------------------------------------------------------------1.00--------------------------------
.................................................................................................................................................................................GTACTGTGCCTCTCTGTTTTCAGAA................................................2511.001.00----------------------------------------------------------------1.00-------------------------------------------------------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTTT...................................................201.000.00-----------------1.00------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TACTGTGCCTCTCTGTTTTCAAA.................................................2311.0011.00-----------------1.00------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCATA.................................................2211.0014.00-----------------1.00------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TGTGAAAGCAGAGAGGCATTTTTCT..........................................................................................2511.001.00-----------------1.00------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTACTGTGCCTCTCTGTTTTCAA..................................................2311.007.00-1.00----------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................TGTGCCTCTCTGTTTTCAGAGTTT.............................................2411.001.00---------1.00--------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TACTGTGCCTCTCTGTTTTCAC..................................................2211.0011.00----1.00-------------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTACTGTGCCTCTCTGTTTTCT...................................................2211.007.00------------------------------------------------------------------------------------------------------------------------------------------1.00-----------------
.....................................................................................................................................................................................TGTGCCTCTCTGTTTTCAGTA................................................211.000.00---------1.00--------------------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGAAAGCAGAGAGGCATTTTTC...........................................................................................2211.001.00---------------------------------------------------------------------------------------------------------------------------------1.00--------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCAAG.................................................2211.0014.00----------------------------------------------------------------1.00-------------------------------------------------------------------------------------------
..................................................................................................................................................................................TACTGTGCCTCTCTGTTTTC....................................................2011.001.00-------------------------------1.00----------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCATTAA...............................................2411.0014.00-----------------------------------------------1.00------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTACTGTGCCTCTCTGTTTTA....................................................2111.005.00---------------------------------------------------------------------------------------------------------------1.00--------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTA....................................................191.000.00--------------------------------------------------1.00---------------------------------------------------------------------------------------------------------
.......................................................................................................................................TGTGAAAGCAGAGAGGCA.................................................................................................1831.001.00------------------------0.67-------------------------------0.33---------------------------------------------------------------------------------------------------
........................................................................................................................................GTGAAAGCAGAGAGGCATTTTA............................................................................................221.000.00-----1.00------------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TACTGTGCCTCTCTGTTCAGT...................................................211.000.00--------------------------1.00---------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCCGTT................................................2311.002.00-----1.00------------------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TGTGAAAGCAGAGAGGCATTT..............................................................................................2111.001.00----------------------------------------------1.00-------------------------------------------------------------------------------------------------------------
.........................................................................................................................................TGAAAGCAGAGAGGCATTTT.............................................................................................2011.001.00-----------------------------------1.00------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TACTGTGCCTCTCTGTTTTCAGTTT...............................................2511.0023.00-1.00----------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................TGTGCCTCTCTGTTTTCAGT.................................................201.000.00--------------------------1.00---------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................GTGAAAGCAGAGAGGCATTTTTA...........................................................................................2311.004.00----------------------------------------------1.00-------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTAAA...................................................201.000.00-1.00----------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................TGTGCCTCTCTGTTTTCAGA.................................................2011.001.00---1.00--------------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................GTACTGTGCCTCTCTGTTTTCGA..................................................2311.007.00-------------------------------------------------------------------------------------------------------------------------------------1.00----------------------
.....................................................................................................................................................................................TGTGCCTCTCTGTTTTCAGAAG...............................................221.000.00---------------1.00--------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................TGTGAAAGCAGAGAGGCATTTTTA...........................................................................................2411.009.00---------------------------------------------------------------------------------------1.00--------------------------------------------------------------------
............................................................................................ATTCACCACACTCAGCCCTTGGGC......................................................................................................................................2411.001.00--------------------1.00---------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTTCAGAAT...............................................2411.0012.00------------------------------------------------------------------------------------------------------------------------------------------------------1.00-----
............................................................................................................................................AAGCAGAGAGGCATTTGA............................................................................................1860.170.17----------------------------------------------------------------------------------------------------------------------------------------------------------0.17-
............................................................................................................................................AAGCAGAGAGGCATTT..............................................................................................1660.170.17-----------------------------------------------------------------------------------------------------------------------------------------------------------0.17

Antisense strand
TGTGATTCATCTCAGAACAGTTACCCGTTCTAAGGGATAGCTTCCACTCCTTCCAACAGATGCTGTGGGGAGCTTTCTACTATACTGATAAAATTCACCACACTCAGCCCTTGGGCTCCTCACTTGTGTCCTGCCTGTGAAAGCAGAGAGGCATTTTTCTCTGTCGCAGCTACTTGAGTACTGTGCCTCTCTGTTTTCAGAAAGGAAGCTTCACCCCAGGACAGCAAGGTCCCCACTGAAGAGCCTGGCA
.........................................................................................................................................(((((((((((((((((....(((..............)))....)))))))))))))))))...................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormmjLiverWT1()
Liver Data. (liver)
SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)
mjLiverKO1()
Liver Data. (Zcchc11 liver)
mjLiverWT3()
Liver Data. (liver)
mjTestesWT4()
Testes Data. (testes)
SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)
SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)
mjTestesWT1()
Testes Data. (testes)
mjLiverKO2()
Liver Data. (Zcchc11 liver)
mjLiverKO3()
Liver Data. (Zcchc11 liver)
SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)
mjLiverWT2()
Liver Data. (liver)
SRR553584(SRX182790)
source: Heart. (Heart)
SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)
SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR553582(SRX182788)
source: Brain. (Brain)
SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)
SRR553585(SRX182791)
source: Kidney. (Kidney)
SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR206940(GSM723281)
other. (brain)
SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)
SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)
SRR095855BC8(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesWT3()
Testes Data. (testes)
SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)
SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)
SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR525244(SRA056111/SRX170320)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)
SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)
SRR065053(SRR065053)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR095855BC5(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)
SRR206942(GSM723283)
other. (brain)
SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)
SRR095855BC1(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR206939(GSM723280)
other. (brain)
mjTestesWT2()
Testes Data. (testes)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
mjTestesKO5()
Testes Data. (Zcchc11 testes)
GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)
SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)
SRR059770(GSM562832)
Treg_Dicer. (spleen)
SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)
SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)
SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)
SRR060845(GSM561991)
total RNA. (brain)
SRR206941(GSM723282)
other. (brain)
SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)
SRR095855BC2(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR037921(GSM510459)
e12p5_rep3. (embryo)
SRR095855BC10(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR065045(SRR065045)
Tissue-specific Regulation of Mouse MicroRNA . (liver)
SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)
SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)
GSM510456(GSM510456)
newborn_rep12. (total RNA)
SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)
SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)
GSM361395(GSM361395)
CGNP_P6_wt_rep2. (brain)
SRR525239(SRA056111/SRX170315)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)
SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
GSM475279(GSM475279)
Miwi-IP. (miwi testes)
SRR346415(SRX098256)
source: Testis. (Testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR037902(GSM510438)
testes_rep3. (testes)
GSM361402(GSM361402)
CGNP_P6_p53--_Ink4c--_rep5. (brain)
GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)
SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)
SRR038741(GSM527276)
small RNA-Seq. (brain)
SRR065047(SRR065047)
Tissue-specific Regulation of Mouse MicroRNA . (liver)
SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)
SRR037906(GSM510442)
brain_rep3. (brain)
GSM510444(GSM510444)
brain_rep5. (brain)
SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)
SRR069834(GSM304914)
Analysis of small RNAs in murine neutrophils cultured in vitro by Solexa/Illumina genome analyzer. (blood)
SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)
SRR037898(GSM510434)
ovary_rep3. (ovary)
SRR039610(GSM527274)
small RNA-Seq. (brain)
SRR363957(GSM822759)
P20-WTSmall RNA Miwi IPread_length: 36. (testes)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)
GSM361408(GSM361408)
WholeCerebellum_P6_wt_rep1. (brain)
GSM361399(GSM361399)
CGNP_P6_p53--_Ink4c--_rep2. (brain)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR095855BC6(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR095855BC3(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
GSM361394(GSM361394)
CGNP_P6_wt_rep1. (brain)
SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)
SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR037920(GSM510458)
e12p5_rep2. (embryo)
GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)
SRR363958(GSM822760)
Adult-WTSmall RNA Miwi IP. (testes)
Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)
SRR014231(GSM319955)
16.5 dpc total. (testes)
GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)
SRR037912(GSM510449)
newborn_rep5. (total RNA)
SRR095855BC9(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR306540(GSM750583)
19-24nt. (ago2 brain)
SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)
SRR038740(GSM527275)
small RNA-Seq. (dicer brain)
SRR077864(GSM637801)
18-30 nt small RNAs. (liver)
SRR038744(GSM527279)
small RNA-Seq. (brain)
SRR037900(GSM510436)
testes_rep1. (testes)
GSM475281(GSM475281)
total RNA. (testes)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
SRR037901(GSM510437)
testes_rep2. (testes)
SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)
SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR042485(GSM539877)
mouse testicular tissue [09-002]. (testes)
SRR037903(GSM510439)
testes_rep4. (testes)
GSM640576(GSM640576)
small RNA in the liver with paternal low prot. (liver)
SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)
GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)
GSM361430(GSM361430)
WholeCerebellum_1month_Ptc+-_Ink4c--_rep2. (brain)
SRR059769(GSM562831)
Treg_Drosha. (spleen)
SRR306537(GSM750580)
19-24nt. (ago2 brain)
GSM509276(GSM509276)
small RNA cloning by length. (testes)
SRR073954(GSM629280)
total RNA. (blood)
SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)
SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)
Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
SRR525243(SRA056111/SRX170319)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)
SRR042481(GSM539873)
mouse pancreatic tissue [09-002]. (pancreas)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR077866(GSM637803)
18-30 nt small RNAs. (liver)
SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)
SRR095855BC4(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR065048(SRR065048)
Tissue-specific Regulation of Mouse MicroRNA . (liver)
SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)
SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR525241(SRA056111/SRX170317)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)
SRR037922(GSM510460)
e12p5_rep4. (embryo)
GSM510453(GSM510453)
newborn_rep9. (total RNA)
SRR042453(GSM539845)
mouse marginal zone B cells (spleen) [09-002]. (b cell)
SRR095853(SRX039174)
sequencing of miRNA from wild type and diseas. (heart)
SRR525242(SRA056111/SRX170318)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)
SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)
SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
.......................................................................................................................................TGTGAAAGCAGAGAGGCATTTTT............................................................................................ 2315.005.00-----------------------------------------------------------------2.00------2.00----------------1.00------------------------------------------------------------------
........................................CTTCCACTCCTTCCAACAGATGCTG......................................................................................................................................................................................... 2514.004.00----4.00-------------------------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................TCTCTGTTTTCAGAAAGCAA........................................... 203.000.00--------------------------------------------------------------------------------------2.00--------------1.00------------------------------------------------------
.......................................................................................................................................TGTGAAAGCAGAGAGGCATTT.............................................................................................. 2113.003.00-----------------------------------------------------------------------------------------1.001.00---1.00-------------------------------------------------------------
........................................................................................................................................GTGAAAGCAGAGAGGCATTTTTC........................................................................................... 2312.002.00------------------------------------------------------------------------------------------1.00---1.00-------------------------------------------------------------
.........................................................................................................................................................................................................AAGGAAGCTTCACCCCAGGAC............................ 2112.002.00-----------------------------------------------------------------1.00------1.00-----------------------------------------------------------------------------------
.............................................ACTCCTTCCAACAGATTGAT......................................................................................................................................................................................... 202.000.00-------------------------------------------------------------------2.00----------------------------------------------------------------------------------------
...........................................................................................................................................................................................TCTCTGTTTTCAGAAAGGAA........................................... 2012.002.00-----------------------------------------------------------------------1.00-----------------------------------------1.00------------------------------------------
...........................................................................................................................................................................................TCTCTGTTTTCAGAAAGGAACA......................................... 221.000.00-----------------------------------------------------------------------1.00------------------------------------------------------------------------------------
...................................................................................................................................................................................ACTGTGCCTCTCTGTTTT..................................................... 1811.001.00------------------------------------------------------------------------------------------------------------------------------1.00-----------------------------
...........................................................................................................................................................................................TCTCTGTTTTCAGAAACC............................................. 181.000.00--------------------------------------------------------------------------------------------------------------------------1.00---------------------------------
........................................................................................................................................................................................................................................CCACTGAAGAGCCTGGCA 181.000.00--------------------------------------------------------------------1.00---------------------------------------------------------------------------------------
..........CTCAGAACAGTTACCGCC.............................................................................................................................................................................................................................. 181.000.00--------------------------------------------------------------------------1.00---------------------------------------------------------------------------------
........................................................................................................................................................................................GCCTCTCTGTTTTCACTGT............................................... 191.000.00-------------------------------------------------------------------------------------------------------------------------------------------1.00----------------
...........................................................................................................................................................................................TCTCTGTTTTCAGAAACT............................................. 181.000.00--------------------------------------------------------------------------------------------------------------------1.00---------------------------------------
.................................................................................................................GGCTCCTCACTTGTGACA....................................................................................................................... 181.000.00----------------------------------------------------------------------------------------------------------------------------------1.00-------------------------
...........................................................................................................................................................................................TCTCTGTTTTCAGAAAGGAAC.......................................... 211.000.00-----------------------------------------------------------------------1.00------------------------------------------------------------------------------------
.........................................TTCCACTCCTTCCAACCGC.............................................................................................................................................................................................. 191.000.00------------------------------------------------------------------------------------------------------------------------------------------------1.00-----------
...........................................................................................................................................................................................TCTCTGTTTTCAGAATAA............................................. 181.000.00-------------------------------------------------------------------------------------------------------------------------1.00----------------------------------
.....................................................................................................ACTCAGCCCTTGGGCCGG................................................................................................................................... 181.000.00-------------------------------------------------------------------1.00----------------------------------------------------------------------------------------
.......................CCCGTTCTAAGGGA..................................................................................................................................................................................................................... 1450.200.20---------------------------------------------------------------------------------------------------------------------------------------------------------0.20--