ID: mmu-mir-7041
GENE: Lrig1(1)
chr6:94556308-94556557-


(1)
AGO.mut
(2)
AGO1.ip
(9)
AGO2.ip
(2)
AGO3.ip
(21)
BRAIN
(7)
CELL-LINE
(1)
DCR.mut
(3)
DGCR8.mut
(12)
EMBRYO
(6)
ESC
(7)
FIBROBLAST
(2)
HEART
(2)
KIDNEY
(13)
LIVER
(3)
LYMPH
(11)
OTHER
(6)
OTHER.mut
(2)
PANCREAS
(2)
PIWI.ip
(1)
PIWI.mut
(8)
SKIN
(5)
SPLEEN
(16)
TESTES
(8)
TOTAL-RNA

Sense strand
AAATTAATTTTACACGTATACTTAGGCACACAAGACTAAGACATGGTTGGTCTAGCTCCTCTCCACATACACATTCCAGGGGGTGGGGAGGGGAGAGACAGGGTGGTTATGAAGGCAGTGGTAAGCTGGACTCATCTTCCAATAGTGCCTCTGAGAGGGAATGGAGACTCAGTTGACCTCTGGTTCTCTTCTTCCCTCAGCACACAGTGGCTCTGCTGTATGTAGTGACTGCAGTACTGACACAGCCTAC
..........................................................................................................................................................(((((((.(((((..(((.......)))..)))))..)))))))....................................................
....................................................................................................................................................149................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)
SRR059769(GSM562831)
Treg_Drosha. (spleen)
Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
mjLiverKO1()
Liver Data. (Zcchc11 liver)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)
Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)
mjLiverWT1()
Liver Data. (liver)
SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
SRR394083(GSM855969)
background strain: C57BL6/SV129cell type: KRa. (cell line)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)
Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)
mjLiverKO3()
Liver Data. (Zcchc11 liver)
GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)
SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)
mjTestesWT4()
Testes Data. (testes)
mjLiverWT3()
Liver Data. (liver)
SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)
mjTestesWT3()
Testes Data. (testes)
SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR029123(GSM416611)
NIH3T3. (cell line)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)
SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)
GSM510456(GSM510456)
newborn_rep12. (total RNA)
GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)
SRR553584(SRX182790)
source: Heart. (Heart)
SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR346415(SRX098256)
source: Testis. (Testes)
SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)
SRR059775(GSM562837)
MEF_Drosha. (MEF)
Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)
GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)
SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)
SRR037921(GSM510459)
e12p5_rep3. (embryo)
GSM510444(GSM510444)
brain_rep5. (brain)
SRR037912(GSM510449)
newborn_rep5. (total RNA)
SRR553585(SRX182791)
source: Kidney. (Kidney)
SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)
SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)
SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)
SRR206941(GSM723282)
other. (brain)
Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)
GSM510452(GSM510452)
newborn_rep8. (total RNA)
SRR206942(GSM723283)
other. (brain)
SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)
SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)
SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)
RuiDGCR8WT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)
SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)
SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR037910(GSM510447)
newborn_rep3. (total RNA)
SRR065045(SRR065045)
Tissue-specific Regulation of Mouse MicroRNA . (liver)
SRR306537(GSM750580)
19-24nt. (ago2 brain)
SRR306540(GSM750583)
19-24nt. (ago2 brain)
SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)
GSM416732(GSM416732)
MEF. (cell line)
SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)
SRR402766(SRX117949)
source: ES PGK female cells. (ESC)
SRR037914(GSM510451)
newborn_rep7. (total RNA)
SRR077866(GSM637803)
18-30 nt small RNAs. (liver)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)
SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)
SRR038744(GSM527279)
small RNA-Seq. (brain)
SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)
SRR065053(SRR065053)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR306536(GSM750579)
19-24nt. (ago2 brain)
SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)
SRR037919(GSM510457)
e12p5_rep1. (embryo)
SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)
SRR059772(GSM562834)
CD4_Drosha. (spleen)
SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)
SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)
SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)
SRR306541(GSM750584)
19-24nt. (ago2 brain)
SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
GSM510454(GSM510454)
newborn_rep10. (total RNA)
GSM640576(GSM640576)
small RNA in the liver with paternal low prot. (liver)
GSM510455(GSM510455)
newborn_rep11. (total RNA)
SRR059770(GSM562832)
Treg_Dicer. (spleen)
SRR037905(GSM510441)
brain_rep2. (brain)
SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR206939(GSM723280)
other. (brain)
SRR553582(SRX182788)
source: Brain. (Brain)
GSM510453(GSM510453)
newborn_rep9. (total RNA)
SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)
SRR037922(GSM510460)
e12p5_rep4. (embryo)
GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)
SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)
GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)
SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)
SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)
....................................................................................................................................................................................TGGTTCTCTTCTTCCCTCAGA.................................................21147.002.001.00-12.00--1.00-5.00-5.00-2.00---2.00--1.001.00--1.001.00----------------------2.00--1.00----1.00-1.00---1.00-1.002.00-------1.00----1.00---------1.00----1.00-----------------1.00-----1.00-------
.........................................................................................................................................................AGAGGGAATGGAGACTCAGTTGACC........................................................................25136.0036.005.001.00--5.001.001.001.002.007.00---3.00--1.001.00-1.001.00--------------1.00-1.001.00------------------------------------1.00----1.00--------------------------------------1.00---
...................................................................................................................................................................................CTGGTTCTCTTCTTCCCTCAGA.................................................22134.003.00-1.003.007.00-1.001.002.00--1.002.00---2.00----1.002.00-1.00-2.00-1.00-----------------1.001.00-----2.001.00------1.00--------------------------------------1.00-----------------------
....................................................................................................................................................................................TGGTTCTCTTCTTCCCTCAGT.................................................21127.002.002.004.00--1.001.002.001.00---1.00---1.00-1.00-----------1.003.00-----------------------1.00------------------1.00----1.00-----------------1.00---1.00---1.00--1.00--1.00--1.00---------
.........................................................................................................................................................AGAGGGAATGGAGACTCAGTTGAC.........................................................................24122.0022.00--1.00-2.002.00--1.00-------3.001.00------5.00---------2.00---1.00-1.00-----------------------1.00---------------------------1.00---------------------1.00--------
.........................................................................................................................................................AGAGGGAATGGAGACTCAGTT............................................................................21121.0021.00-1.00----2.001.00---------1.001.00-------1.00-4.00-1.00-------1.00-1.00---1.001.00---1.00----------------1.00--1.00--------------1.00---------------------------------1.00----
.........................................................................................................................................................AGAGGGAATGGAGACTCAGTTGA..........................................................................23119.0019.00-3.00--3.00-----------1.00------1.00--1.00----------1.00-1.00-----1.00-1.00---------2.00------1.00--1.00------1.00-------------1.00----------------------------------
.......................................................................................................................................................TGAGAGGGAATGGAGACTCAGT.............................................................................22117.0017.00----------3.00--2.00----1.00-------1.00----1.00-----------2.00------------1.00-1.00------1.00--2.00--------------------------1.00--------------------1.00------
.........................................................................................................................................................AGAGGGAATGGAGACTCAGTTGACCT.......................................................................26116.0016.001.00---2.00-2.001.003.00--1.00------1.001.00---1.00------------1.00-------------1.001.00-----------------------------------------------------------------------
...................................................................................................................................................................................CTGGTTCTCTTCTTCCCTCAGT.................................................22115.003.002.002.001.00---1.00---------------1.00----------1.00-1.002.00-------1.00----------------------------------1.00---------------------1.00---------------1.00-----
........................................................................................................................................................GAGAGGGAATGGAGACTCAGT.............................................................................21114.0014.00-------1.00--1.00---3.00-----4.00------------------2.00--------2.00--1.00-----------------------------------------------------------------------
....................................................................................................................................................................................TGGTTCTCTTCTTCCCTCAGTT................................................22113.002.002.002.001.00---1.00---1.001.00---1.00-----1.00--------------------1.00-1.00----------1.00-------------------------------------------------------------------
..................................................................................................................................................................................TCTGGTTCTCTTCTTCCCTCAGA.................................................23113.008.001.00-2.003.00----1.00------1.00---1.00---------1.00----1.00------------------------1.00-----1.00---------------------------------------------------------
..................................................................................................................................................................................TCTGGTTCTCTTCTTCCCTCAGT.................................................23112.008.00-1.001.003.00------------1.00--1.00---1.00-----------1.00-----------------------1.00--1.00--------------1.00---------------------------------------------
....................................................................................................................................................................................TGGTTCTCTTCTTCCCTCAGAA................................................22111.002.00-----1.00--1.00---9.00--------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TCTGGTTCTCTTCTTCCCTCAG..................................................2218.008.00---6.00---------------------1.00-----------------------------1.00-------------------------------------------------------------------
.........................................................................................................................................................AGAGGGAATGGAGACTCAGTTGACA........................................................................2518.0022.003.00------------------1.00-------3.00-------------------------1.00---------------------------------------------------------------------
.........................................................................................................................................................AGAGGGAATGGAGACTCAGT.............................................................................2017.007.00-1.00--1.00-1.00---1.00-----1.00-------------------------1.00----------------------------------------------1.00---------------------------------
.........................................................................................................................................................AGAGGGAATGGAGACTCAGTTAA..........................................................................2317.0021.001.00----1.00--1.00--1.00------1.00-------1.00--------------1.00---------------------------------------------------------------------------------
.........................................................................................................................................................AGAGGGAATGGAGACTCAGTTG...........................................................................2216.006.00-1.00--2.00------------------------------------1.001.00------------------------------------------1.00-------------------------------------
.........................................................................................................................................................AGAGGGAATGGAGACTCAGTTA...........................................................................2216.0021.00----1.00------------------------------------1.00-1.00------1.00------------------------------1.00---------------1.00-------------------------
....................................................................................................................................................................................TGGTTCTCTTCTTCCCTCAGAT................................................2215.002.002.00-----1.00------------------------2.00-------------------------------------------------------------------------------------------
.......................................................................................................................................................TGAGAGGGAATGGAGACTCAGTTGAC.........................................................................2615.005.00--------------5.00------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CTGGTTCTCTTCTTCCCTCAGC.................................................2215.005.00--1.00----1.00---1.00---2.00-----------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................AGTGACTGCAGTACTGACACAGCCT..2514.004.00----------1.00--1.00----2.00--------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TGGTTCTCTTCTTCCCTCAGAAT...............................................2314.002.00-----1.001.00---1.00-----------------------------1.00----------------------------------------------------------------------------------
...................................................................................................................................................................................CTGGTTCTCTTCTTCCCTCAG..................................................2113.003.00-----------------------------2.00---------------------------------------1.00-----------------------------------------------------
..................................................................................................................................................................................TCTGGTTCTCTTCTTCCCTCAGTT................................................2413.008.00-------------------------2.00----------------------------------------------1.00--------------------------------------------------
....................................................................................................................................................................................TGGTTCTCTTCTTCCCTCAG..................................................2012.002.001.00--------------------------------1.00-----------------------------------------------------------------------------------------
.......................................................................................................................................................TGAGAGGGAATGGAGACTCAG..............................................................................2112.002.00-----1.00---------------------------------------------------------------------------------------------------------1.00-----------
.......................................................................................................................................................TGAGAGGGAATGGAGACTCAGTA............................................................................2312.0017.00-----------------1.00----------------------------------------------------------------------------------------------1.00----------
........................................................................................................................................................GAGAGGGAATGGAGACTCAGTT............................................................................2212.002.00----------------------2.00----------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TCTGGTTCTCTTCTTCCCTCA...................................................2112.002.00-1.00----------------------------------------------------------------------------------------1.00--------------------------------
.......................................................................................................................................................TGAGAGGGAATGGAGACTCAGTAAT..........................................................................2512.0017.00--------2.00------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................AGTGACTGCAGTACTGACAC.......2012.002.00-----1.00---------------------------------------------------------------------------------------------------1.00-----------------
........................................................................................................................................................GAGAGGGAATGGAGACTCAGA.............................................................................2111.001.00----1.00----------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TGGTTCTCTTCTTCCCTCAGTAG...............................................2311.002.00---------------------------------------------------------------------------------------------1.00-----------------------------
...............................................................................................................................................................................................................................AGTGACTGCAGTACTGAC.........1811.001.00-------------1.00-------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TGGTTCTCTTCTTCCCTCATT.................................................211.000.00-1.00-------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................GAGAGGGAATGGAGACTCAGTTT...........................................................................2311.002.00-1.00-------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................AGAGGGAATGGAGACTCAGTTT...........................................................................2211.0021.00----1.00----------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................AGAGGGAATGGAGACTCAGTTGACCTT......................................................................2711.0016.00-1.00-------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................TGAGAGGGAATGGAGACTCAGA.............................................................................2211.002.00-1.00-------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TGGTTCTCTTCTTCCCTCAGTTT...............................................2311.002.00----------1.00----------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TGGTTCTCTTCTTCCCTCAGAGT...............................................2311.002.00------------------------------------------------------------------------------------------------------------------------1.00--
.......................................................................................................................................................TGAGAGGGAATGGAGACTCAGTTA...........................................................................241.000.00----------1.00----------------------------------------------------------------------------------------------------------------
....................................................................................................................................................CTCTGAGAGGGAATGGAGACTCAT..............................................................................2411.001.00----------------------------------------------------------------------------------------------1.00----------------------------
.........................................................................................................................................................AGAGGGAATGGAGACTCAGTAA...........................................................................2211.007.00--------------------1.00------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................TGCAGTACTGACACAGCTG..191.000.00--------------------------------1.00------------------------------------------------------------------------------------------
.........................................................................................................................................................AGAGGGAATGGAGACTCAGTTGACCGAAT....................................................................2911.0036.00----1.00----------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TGGTTCTCTTCTTCCCTCATAA................................................221.000.00------------1.00--------------------------------------------------------------------------------------------------------------
........................................................................................................................................................GAGAGGGAATGGAGACTCAGTTTT..........................................................................2411.002.00-1.00-------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................GAGAGGGAATGGAGACTCAGTTGACCTC......................................................................2811.001.00----------------------------------------------------------1.00----------------------------------------------------------------
.........................................................................................................................................................AGAGGGAATGGAGACTCAGTTGACT........................................................................2511.0022.00-----------------1.00---------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TGGTTCTCTTCTTCCCTCAGGT................................................2211.002.00-------------------------------1.00-------------------------------------------------------------------------------------------
.........................................................................................................................................................AGAGGGAATGGAGACTCAGTTGACCTTT.....................................................................2811.0016.001.00--------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................GAGAGGGAATGGAGACTCGGA.............................................................................211.000.00--------------1.00------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................GGTTCTCTTCTTCCCTCAGGT................................................211.000.00--------------------------------------------------------------------------------------------------1.00------------------------
........................................................................................................................................................GAGAGGGAATGGAGACTCAG..............................................................................2011.001.00-------------------------------------------------------------------1.00-------------------------------------------------------
...................................................................................................................................................................................................................TCTGCTGTATGTAGTGACTGC..................2111.001.00-----1.00---------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TGGTTCTCTTCTTCCCTCAGAGA...............................................2311.002.00-----1.00---------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................AGAGGGAATGGAGACTCAGTTGAT.........................................................................2411.0019.00----------------1.00----------------------------------------------------------------------------------------------------------
................TATACTTAGGCACACTAT........................................................................................................................................................................................................................181.000.00---------------------------------------------------------------------------------------1.00-----------------------------------
.................................................................................................................................................TGCCTCTGAGAGGGAATGGAGACT.................................................................................2411.001.00-----1.00---------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................AGAGGGAATGGAGACTCAGTTC...........................................................................2211.0021.001.00--------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TCTGGTTCTCTTCTTCCCTCAGTA................................................2411.008.00-------------------1.00-------------------------------------------------------------------------------------------------------
.........................................................................................................................................................AGAGGGAATGGAGACTCAGTTGAACT.......................................................................2611.0019.00-------------------------------------1.00-------------------------------------------------------------------------------------
....................................................................................................................................................................................TGGTTCTCTTCTTCCCTCAGCTAAT.............................................251.000.001.00--------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................AGAGGGAATGGAGACTCAGTTGAAA........................................................................2511.0019.00------------------------------------------------------------------1.00--------------------------------------------------------
....................................................................................................................................................CTCTGAGAGGGAATGGAGACTCA...............................................................................2311.001.00-----------------1.00---------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................TTCTCTTCTTCCCTCAGAAGT..............................................211.000.001.00--------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................TTCTCTTCTTCCCTCAGAAGA..............................................211.000.00---------------------------------1.00-----------------------------------------------------------------------------------------
...................................................................................................................................................................................CTGGTTCTCTTCTTCCCTCAGTAAA..............................................2511.003.00----------------------1.00----------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CTGGTTCTCTTCTTCCCTCATA.................................................221.000.00---1.00-----------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................AGAGGGAATGGAGACTCAGTTAGA.........................................................................2411.0021.00-------------1.00-------------------------------------------------------------------------------------------------------------
........................................................................................................................................................GAGAGGGAATGGAGACTCA...............................................................................1911.001.00--------------------------1.00------------------------------------------------------------------------------------------------
......................................................................................................................................................CTGAGAGGGAATGGAGACTCAGTTGAC.........................................................................2711.001.00-------------------------------------------------------------1.00-------------------------------------------------------------
.......................................................................................................................................................TGAGAGGGAATGGAGACTCAGTAA...........................................................................2411.0017.00-------------------------------------------------------------------------------------------------------1.00-------------------
..................................................................................GTGGGGAGGGGAGAGTAT......................................................................................................................................................181.000.00--------------------------------1.00------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................AGTGGCTCTGCTGTATGTAGTGACTGC..................2711.001.00----------------------------------------------------------------------------------------------------------1.00----------------
.........................................................................................................................................................AGAGGGAATGGAGACTCAGTTGACCTCT.....................................................................2811.001.00-------------------------------------------------------------1.00-------------------------------------------------------------
....................................................................................................................................................................................TGGTTCTCTTCTTCCCTCAAGC................................................221.000.00-----------1.00---------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................AGAGGGAATGGAGACTCAG..............................................................................1911.001.00-----------------------------------------------1.00---------------------------------------------------------------------------
....................................................................................................................................................................................TGGTTCTCTTCTTCCCTCACGA................................................221.000.00-----------1.00---------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................AGGGAATGGAGACTCAGTTGAC.........................................................................2211.001.00------1.00--------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................TCTGAGAGGGAATGGAGACT.................................................................................2011.001.00------------------------------------------------------------------------------------------------------1.00--------------------
..........................................................................................................................AAGCTGGACTCATCTTCCAAT...........................................................................................................2111.001.00------------------1.00--------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TGGTTCTCTTCTTCCCTCAATT................................................221.000.001.00--------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................TGGTTCTCTTCTTCCCTCAGAAA...............................................2311.002.00-----------------1.00---------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................TGTATGTAGTGACTGCAGTAC.............2111.001.00----------------------------------------------------------------------------------1.00----------------------------------------
.........................................................................................................................................................AGAGGGAATGGAGACTCAGTTGACCA.......................................................................2611.0036.00--------1.00------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................CTGAGAGGGAATGGAGA...................................................................................1730.330.33---------------------------0.33-----------------------------------------------------------------------------------------------
...................................................................................................................................................................................CTGGTTCTCTTCTTCCCT.....................................................1840.250.25-------------------------------------------------------------------------------------------------------------------------0.25-

Antisense strand
AAATTAATTTTACACGTATACTTAGGCACACAAGACTAAGACATGGTTGGTCTAGCTCCTCTCCACATACACATTCCAGGGGGTGGGGAGGGGAGAGACAGGGTGGTTATGAAGGCAGTGGTAAGCTGGACTCATCTTCCAATAGTGCCTCTGAGAGGGAATGGAGACTCAGTTGACCTCTGGTTCTCTTCTTCCCTCAGCACACAGTGGCTCTGCTGTATGTAGTGACTGCAGTACTGACACAGCCTAC
..........................................................................................................................................................(((((((.(((((..(((.......)))..)))))..)))))))....................................................
....................................................................................................................................................149................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)
SRR059769(GSM562831)
Treg_Drosha. (spleen)
Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
mjLiverKO1()
Liver Data. (Zcchc11 liver)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)
Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)
mjLiverWT1()
Liver Data. (liver)
SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
SRR394083(GSM855969)
background strain: C57BL6/SV129cell type: KRa. (cell line)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)
Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)
mjLiverKO3()
Liver Data. (Zcchc11 liver)
GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)
SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)
mjTestesWT4()
Testes Data. (testes)
mjLiverWT3()
Liver Data. (liver)
SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)
mjTestesWT3()
Testes Data. (testes)
SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR029123(GSM416611)
NIH3T3. (cell line)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)
SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)
GSM510456(GSM510456)
newborn_rep12. (total RNA)
GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)
SRR553584(SRX182790)
source: Heart. (Heart)
SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR346415(SRX098256)
source: Testis. (Testes)
SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)
SRR059775(GSM562837)
MEF_Drosha. (MEF)
Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)
GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)
SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)
SRR037921(GSM510459)
e12p5_rep3. (embryo)
GSM510444(GSM510444)
brain_rep5. (brain)
SRR037912(GSM510449)
newborn_rep5. (total RNA)
SRR553585(SRX182791)
source: Kidney. (Kidney)
SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)
SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)
SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)
SRR206941(GSM723282)
other. (brain)
Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)
SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)
SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)
GSM510452(GSM510452)
newborn_rep8. (total RNA)
SRR206942(GSM723283)
other. (brain)
SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)
SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)
SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)
RuiDGCR8WT(Rui)
DGCR8-dependent microRNA biogenesis is essent. (skin)
SRR553604(SRX182810)
source: Spermatocytes. (Spermatocytes)
SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR037910(GSM510447)
newborn_rep3. (total RNA)
SRR065045(SRR065045)
Tissue-specific Regulation of Mouse MicroRNA . (liver)
SRR306537(GSM750580)
19-24nt. (ago2 brain)
SRR306540(GSM750583)
19-24nt. (ago2 brain)
SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)
GSM416732(GSM416732)
MEF. (cell line)
SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)
SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)
SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)
SRR402766(SRX117949)
source: ES PGK female cells. (ESC)
SRR037914(GSM510451)
newborn_rep7. (total RNA)
SRR077866(GSM637803)
18-30 nt small RNAs. (liver)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)
SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)
SRR038744(GSM527279)
small RNA-Seq. (brain)
SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)
SRR065053(SRR065053)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR306536(GSM750579)
19-24nt. (ago2 brain)
SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)
SRR037919(GSM510457)
e12p5_rep1. (embryo)
SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)
SRR059772(GSM562834)
CD4_Drosha. (spleen)
SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)
SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)
SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)
SRR306541(GSM750584)
19-24nt. (ago2 brain)
SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
GSM510454(GSM510454)
newborn_rep10. (total RNA)
GSM640576(GSM640576)
small RNA in the liver with paternal low prot. (liver)
GSM510455(GSM510455)
newborn_rep11. (total RNA)
SRR059770(GSM562832)
Treg_Dicer. (spleen)
SRR037905(GSM510441)
brain_rep2. (brain)
SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR206939(GSM723280)
other. (brain)
SRR553582(SRX182788)
source: Brain. (Brain)
GSM510453(GSM510453)
newborn_rep9. (total RNA)
SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)
SRR037922(GSM510460)
e12p5_rep4. (embryo)
GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)
SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)
GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)
SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)
SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)
...............................................................................................................................................................................................................TGGCTCTGCTGTATGTAGTGACT.................... 2313.003.00---------------------3.00-----------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................ATGTAGTGACTGCAGGT.............. 171.000.00------------------------------------------------------------------------------------------------------------1.00--------------
.................................................................................................................................................................................CTCTGGTTCTCTTCTCAC....................................................... 181.000.00-------------1.00-------------------------------------------------------------------------------------------------------------
...............................................................................................................................GGACTCATCTTCCAATAGTGCCTCTGA................................................................................................ 2711.001.00-----------------------------------------------------------------------------------1.00---------------------------------------
..........................................................................................................................................................................................................CACAGTGGCTCTGCTCTC.............................. 181.000.00----------------------------------------------------------------------1.00----------------------------------------------------
..........................................................................................................................................................................................TCTTCTTCCCTCAGCTCG.............................................. 181.000.00--------------------------------1.00------------------------------------------------------------------------------------------
...................................................................................................................................................................................CTGGTTCTCTTCTTCCCT..................................................... 1840.250.25--------------------------------0.25------------------------------------------------------------------------------------------
.......................................................................................................................................CTTCCAATAGTGCCT.................................................................................................... 1580.120.12--------------------------------------------------------------------------------------------------------------------------0.12