ID: mmu-mir-7040
GENE: Loxl3(9)
chr6:82999591-82999817+


(1)
AGO1.ip 		(3)
AGO2.ip 		(1)
B-CELL 		(10)
BRAIN 		(4)
CELL-LINE 		(1)
DCR.mut 		(3)
EMBRYO 		(5)
ESC 		(7)
FIBROBLAST 		(1)
HEART 		(1)
KIDNEY 		(2)
LIVER 		(2)
LUNG 		(1)
LYMPH 		(12)
OTHER 		(2)
OTHER.mut 		(2)
PIWI.ip 		(1)
PIWI.mut 		(1)
SKIN 		(2)
SPLEEN 		(6)
TESTES 		(1)
TOTAL-RNA 		(3)
UTERUS

Sense strand
CTGCAAGAAGACGGGAACCCGCTTCACTGCGGGGGTCATCTGTTCTGAAAGTGAGTAGTATCAGCTAGAGCTAATTGGAGGGGCTGTGCTGTGATCTGCCTCGAGAGAAGCCAGTCTCCCATACGGAGGGAGATGGAGGCGCCCTCAGTGGTAACCGCCACCCTCTCTCTCACGTAGCTGCTTCAGATCTGCTGCTGCACTCGGCACTGGTACAGGAAACTGCTTAT
.........................................................................................................................((((((((((((.((.((((.((.....))....)))).)).)))))))).))))...................................................
..................................................................................................................115...........................................................177................................................
SizePerfect hitTotal NormPerfect NormSRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR394083(GSM855969)
background strain: C57BL6/SV129cell type: KRa. (cell line)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR073955(GSM629281)
total RNA. (blood)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		GSM416732(GSM416732)
MEF. (cell line)		SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR042453(GSM539845)
mouse marginal zone B cells (spleen) [09-002]. (b cell)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR206941(GSM723282)
other. (brain)		SRR060845(GSM561991)
total RNA. (brain)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR042460(GSM539852)
mouse neutrophil cells replicate 2 [09-002]. (blood)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		SRR042479(GSM539871)
mouse liver tissue [09-002]. (liver)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)
.......................................................................................................................CATACGGAGGGAGATGGAGGCG......................................................................................22145.0045.003.004.007.005.003.002.001.00-5.006.00----1.00-------1.00-2.00-----1.00-------1.00-1.00--------1.00-------1.00----
........................................................................................................................ATACGGAGGGAGATGGAGGCG......................................................................................21111.0011.001.00-1.00--1.00-1.00--4.00----------1.00---1.00----------------------------1.00-------
...........................................................................................................................................................CGCCACCCTCTCTCTCACGTAGT.................................................2310.000.00---1.002.00---1.00---2.00--------------1.00---1.00---------1.00------1.00-------------
.......................................................................................................................CATACGGAGGGAGATGGAGGCGT.....................................................................................2316.0045.001.00--1.00--1.00-------------------1.00--------1.00----------1.00---------------
.......................................................................................................................CATACGGAGGGAGATGGAGGC.......................................................................................2116.006.00--4.00-1.00--------------------------------1.00------------------------
.......................................................................................................................CATACGGAGGGAGATGGAGGCGA.....................................................................................2315.0045.001.002.00-1.00-1.00--------------------------------------------------------
............................................................................................................................................................GCCACCCTCTCTCTCACGTAGT.................................................225.000.00-------5.00------------------------------------------------------
........................................................................................................................ATACGGAGGGAGATGGAGGCGT.....................................................................................2214.0011.001.00--1.00------------------1.00-----------------------------1.00---------
....................................................................................................................................................................................................GCACTCGGCACTGGTACAGGAAACT......2513.003.00-------------3.00------------------------------------------------
.......................................................................................................................CATACGGAGGGAGATGGA..........................................................................................1813.003.001.00----------------------2.00--------------------------------------
.........................................................................................................................TACGGAGGGAGATGGAGGCGC.....................................................................................2113.003.00-1.00-1.00--1.00-------------------------------------------------------
......................................................................................................................CCATACGGAGGGAGATGGAGGCGT.....................................................................................243.000.00------1.00----------------------------------------1.00--------1.00-----
........................................................................................................................ATACGGAGGGAGATGGAG.........................................................................................1813.003.001.002.00------------------------------------------------------------
..........................................................................................................................ACGGAGGGAGATGGAGGCGT.....................................................................................202.000.00------2.00-------------------------------------------------------
.......................................................................................................................CATACGGAGGGAGATGGAGG........................................................................................2012.002.001.00--1.00----------------------------------------------------------
.........................................................................................................................TACGGAGGGAGATGGAGGCG......................................................................................2012.002.001.00----1.00--------------------------------------------------------
........................................................................................................................ATACGGAGGGAGATGGAGGAA......................................................................................212.000.002.00-------------------------------------------------------------
..........................................................................................................................................GCGCCCTCAGTGGTAACCG......................................................................1911.001.00-----------------------------1.00--------------------------------
..............................................................................................................................AGGGAGATGGAGGCGGAG...................................................................................181.000.00--------------------1.00-----------------------------------------
........................................................................................................................ATACGGAGGGAGATGGAGGCGAC....................................................................................2311.0011.00-----1.00--------------------------------------------------------
........................................................................................................................ATACGGAGGGAGATGGAGGCGA.....................................................................................2211.0011.00--------------------------------------------1.00-----------------
..........................................................................................................................ACGGAGGGAGATGGAGGCGTT....................................................................................211.000.00--------------------------------1.00-----------------------------
.........................................................................................................................TACGGAGGGAGATGGAGGCGTT....................................................................................2211.002.00-1.00------------------------------------------------------------
......................................................................................................................CCATACGGAGGGAGATGGAGG........................................................................................2111.001.00-1.00------------------------------------------------------------
................................................................................GGGCTGTGCTGTGATAAC.................................................................................................................................181.000.00-------------------1.00------------------------------------------
......................................................................................................................CCATACGGAGGGAGATGGAGT........................................................................................2111.001.001.00-------------------------------------------------------------
......................................................GTAGTATCAGCTAGAGCTAATTGGAGGT.................................................................................................................................................281.000.00-----------------------------------------------------------1.00--
.........................................................................................................................TACGGAGGGAGATGGAGGCGTAAA..................................................................................2411.002.00---------------------------------------1.00----------------------
................................................................................................................................................................................................................GGTACAGGAAACTGCG...161.000.00----------------------------1.00---------------------------------
...........................................................ATCAGCTAGAGCTAATACA.....................................................................................................................................................191.000.00-----------------------------------------------------1.00--------
........................................................................................................................................................................................................TCGGCACTGGTACAGGAAAC.......2011.001.00---------------------1.00----------------------------------------
.......................TCACTGCGGGGGTCATCTGTTCT.....................................................................................................................................................................................2311.001.00--------------1.00-----------------------------------------------
................................................................................GGGCTGTGCTGTGATGAAA................................................................................................................................191.000.00-----------------1.00--------------------------------------------
.........................................................................................................................TACGGAGGGAGATGGAGGCGCCAA..................................................................................2411.001.001.00-------------------------------------------------------------
........AGACGGGAACCCGCTAGAG........................................................................................................................................................................................................191.000.00---------------1.00----------------------------------------------
........................................................................................................................ATACGGAGGGAGATGGAGAAAG.....................................................................................2211.003.00-------------------------------------------1.00------------------
........................................................................................................................ATACGGAGGGAGATGGAGGCGAAT...................................................................................2411.0011.00------------------------------------1.00-------------------------
......................................................................................................................CCATACGGAGGGAGATGGAGGCGA.....................................................................................241.000.00------1.00-------------------------------------------------------
.........................................................................................................................TACGGAGGGAGATGGAGGAAA.....................................................................................2111.001.00-----1.00--------------------------------------------------------
.........................................................................................................................TACGGAGGGAGATGGAGGCGA.....................................................................................2111.002.00-----1.00--------------------------------------------------------
........................................................................................................................ATACGGAGGGAGATGGAGGCGTAA...................................................................................2411.0011.00---------------------------------------------------1.00----------
......................................................................................................................CCATACGGAGGGAGATGGAG.........................................................................................2011.001.00------------------------------------------1.00-------------------
.........................................................................................................................TACGGAGGGAGATGGAGG........................................................................................1811.001.00----1.00---------------------------------------------------------
.........................................................................................................................TACGGAGGGAGATGGAGGCGCC....................................................................................2211.001.00----1.00---------------------------------------------------------
........................................................................................................................ATACGGAGGGAGATGGAA.........................................................................................181.000.001.00-------------------------------------------------------------
.........................................................................................................................TACGGAGGGAGATGGAGGC.......................................................................................1911.001.001.00-------------------------------------------------------------
.........................................................................................................................................................................................................CGGCACTGGTACAGGAAACTGCTT..2411.001.00--------------1.00-----------------------------------------------
......................................................................................................................................................................................TCAGATCTGCTGCTGCACTCGGCCC....................251.000.00----------------------------------------------------------1.00---
........................................................................................................................ATACGGAGGGAGATGGAGGCAA.....................................................................................221.000.00-------------------------------------------------------1.00------
.....................CTTCACTGCGGGGGTCATCTGTTCTGA...................................................................................................................................................................................2711.001.00---------------------------------1.00----------------------------
.........................................................................................................................TACGGAGGGAGATGGAGGCGAAA...................................................................................2311.002.001.00-------------------------------------------------------------
.......................................................................................................................CATACGGAGGGAGATGGAGGCAA.....................................................................................2311.006.00---------------------------------------------1.00----------------
.........................................................................................................................TACGGAGGGAGATGGAGGCGTAA...................................................................................2311.002.00-1.00------------------------------------------------------------
.........................................................................................................................TACGGAGGGAGATGGAGGCGCAA...................................................................................2311.003.00---1.00----------------------------------------------------------
.......................................................................................................................CATACGGAGGGAGATGGAGGCGTAA...................................................................................2511.0045.00--------------------------------------------------1.00-----------
.........................................................................................................................TACGGAGGGAGATGGAGGCGT.....................................................................................2111.002.001.00-------------------------------------------------------------
.........................................................................................................................TACGGAGGGAGATGGAGGCGCCAT..................................................................................2411.001.00----1.00---------------------------------------------------------
.........................................................................................................................TACGGAGGGAGATGGAGA........................................................................................181.000.001.00-------------------------------------------------------------
...................................................................................CTGTGCTGTGATCTGCCAGCC...........................................................................................................................211.000.00----------------------------------1.00---------------------------
...........................................................................................................................................................................ACGTAGCTGCTTCA..........................................1460.170.17---------------0.17----------------------------------------------

Antisense strand
CTGCAAGAAGACGGGAACCCGCTTCACTGCGGGGGTCATCTGTTCTGAAAGTGAGTAGTATCAGCTAGAGCTAATTGGAGGGGCTGTGCTGTGATCTGCCTCGAGAGAAGCCAGTCTCCCATACGGAGGGAGATGGAGGCGCCCTCAGTGGTAACCGCCACCCTCTCTCTCACGTAGCTGCTTCAGATCTGCTGCTGCACTCGGCACTGGTACAGGAAACTGCTTAT
.........................................................................................................................((((((((((((.((.((((.((.....))....)))).)).)))))))).))))...................................................
..................................................................................................................115...........................................................177................................................
SizePerfect hitTotal NormPerfect NormSRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR394083(GSM855969)
background strain: C57BL6/SV129cell type: KRa. (cell line)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR073955(GSM629281)
total RNA. (blood)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		GSM416732(GSM416732)
MEF. (cell line)		SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR042453(GSM539845)
mouse marginal zone B cells (spleen) [09-002]. (b cell)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR206941(GSM723282)
other. (brain)		SRR060845(GSM561991)
total RNA. (brain)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)		SRR059775(GSM562837)
MEF_Drosha. (MEF)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR042460(GSM539852)
mouse neutrophil cells replicate 2 [09-002]. (blood)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		SRR042479(GSM539871)
mouse liver tissue [09-002]. (liver)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)
...............................................................................................CTGCCTCGAGAGAAGCCAGTCTCCCATACG...................................................................................................... 3013.003.00-----------3.00--------------------------------------------------
.................CCCGCTTCACTGCGGC.................................................................................................................................................................................................. 162.000.00-------------------1.00----------------------------------------1.00-
........................................................................................................................................................................................................TCGGCACTGGTACAGGAAAC....... 2012.002.00------------------2.00-------------------------------------------
.............................................................................................................................................................CCACCCTCTCTCTCACGTA................................................... 1912.002.00----------------2.00---------------------------------------------
.....................................................................................................................................................................TCTCTCACGTAGCTGCCT............................................ 181.000.00-----------------1.00--------------------------------------------
.........................................................................................................................................GGCGCCCTCAGTGGTACTT....................................................................... 191.000.00---------------1.00----------------------------------------------
.......................................................................................GCTGTGATCTGCCTCTTA.......................................................................................................................... 181.000.001.00-------------------------------------------------------------
......................................................................CTAATTGGAGGGGCTGTG........................................................................................................................................... 1811.001.00------------1.00-------------------------------------------------
............................................................................................................................................................GCCACCCTCTCTCTCACGTA................................................... 2011.001.00----1.00---------------------------------------------------------
............................................................................................................................................................................CGTAGCTGCTTCAGATCTGC................................... 2011.001.00-1.00------------------------------------------------------------
.................................................................................................GCCTCGAGAGAAGCCAGTCTCCCATACGGG.................................................................................................... 301.000.00-----------1.00--------------------------------------------------
................................................................................................TGCCTCGAGAGAAG..................................................................................................................... 14100.100.10-------------------------------------------------------------0.10