ID: mmu-mir-7035
GENE: Rasa4(16)
chr5:136581274-136581523+


(1)
AGO1.ip 		(12)
AGO2.ip 		(5)
B-CELL 		(24)
BRAIN 		(2)
CELL-LINE 		(1)
DGCR8.mut 		(4)
EMBRYO 		(7)
ESC 		(8)
FIBROBLAST 		(7)
HEART 		(2)
KIDNEY 		(7)
LIVER 		(2)
LUNG 		(1)
LYMPH 		(17)
OTHER 		(8)
OTHER.mut 		(4)
PIWI.ip 		(2)
PIWI.mut 		(5)
SPLEEN 		(25)
TESTES 		(1)
THYMUS 		(6)
TOTAL-RNA 		(1)
UTERUS

Sense strand
TCATCAATCAAAAATACCCCACAGGCTTCCCCACAGGTTAATCTGATGGAGACAGCTGCTCATTTGATCACCCCATTCCCAGATTGCTCTAGCTTCTTTGTACCAAGTGGAGAGTCTGTGAGGGGCTGGGAGAGTGGCTCAGAAGAGAGTACCTGGCTCTGGGGAGGAAGGGGCAGACTTCTGAGCCGCTGTCCCTGCAGTGTGTGAACGAGTTGAACCAGTGGCTGTCTGCATTGCGCAAAGCGAGCAC
....................................................................................................................................(((((((((((((...((.(((..(((....)))..))).))...)))))))))))))............................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		mjTestesWT4()
Testes Data. (testes)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		mjTestesWT3()
Testes Data. (testes)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		GSM261959(GSM261959)
oocytesmallRNA-19to30. (oocyte)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		mjLiverWT3()
Liver Data. (liver)		SRR206941(GSM723282)
other. (brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR206940(GSM723281)
other. (brain)		SRR553585(SRX182791)
source: Kidney. (Kidney)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		mjTestesWT2()
Testes Data. (testes)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR206942(GSM723283)
other. (brain)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR346415(SRX098256)
source: Testis. (Testes)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR059774(GSM562836)
MEF_control. (MEF)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR037910(GSM510447)
newborn_rep3. (total RNA)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR095855BC8(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR014231(GSM319955)
16.5 dpc total. (testes)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		GSM640582(GSM640582)
small RNA in the liver with paternal control . (liver)		SRR095855BC2(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR525241(SRA056111/SRX170317)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR095855BC1(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (salivary gland)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR306526(GSM750569)
19-24nt. (ago2 brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		SRR014237(GSM319961)
10 dpp MILI-KO total. (mili testes)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		SRR037901(GSM510437)
testes_rep2. (testes)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR095855BC5(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGT.................................................221343.00343.00105.0042.0019.0013.0014.0013.009.00-7.008.004.008.004.00-5.006.005.001.002.002.002.003.003.004.003.004.003.004.002.002.002.00-4.001.002.00--4.001.001.002.00-1.003.001.002.00-1.001.001.002.001.001.003.00--1.002.00-1.00---1.001.00----1.00-1.00-----------------1.00--1.00----1.00-------------1.00------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAG..................................................21186.0086.0012.0012.004.004.003.004.005.003.003.003.001.002.008.00-1.00-2.001.001.00-2.00--2.00-1.00---1.00----1.00----1.00----1.001.001.00--2.00---------1.00----------1.00---------------------------1.00-----------------------1.00-
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGA.................................................22152.0086.004.002.0014.00-1.003.00---2.001.003.00----1.00-1.002.001.00-2.00--1.00---1.003.00----1.00---1.001.001.001.00------------1.00-------1.00--1.00----------------1.00-----------1.00----------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGTA................................................23138.00343.005.004.004.00-2.00-4.0011.00-1.001.00-------------2.00--1.00------1.00------1.00-------------------------------------------------1.00--------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGTT................................................23117.00343.008.00-1.00-----------1.00----1.00-4.00-------1.00-----1.00----------------------------------------------------------------------------------------
..................................................................................................................................................................................TTCTGAGCCGCTGTCCCTGCAG..................................................2219.009.001.00--2.00----2.00----2.00--------------------------------------------------1.00------------------------------------------1.00----------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGTAGA..............................................2517.00343.00---6.00-----------1.00------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCA...................................................2017.007.00-1.002.00-----2.00-----1.00-----------------------------1.00-------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGTAT...............................................2417.00343.00---2.00--------------------1.00---1.00-------------------1.00--1.00--------------------------------------------------------------1.00---------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAA..................................................2115.007.00-1.00----1.00------1.00---1.00----------------------------1.00-----------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGTAA...............................................2415.00343.00-2.00--------1.00-----------------------------------------------2.00-----------------------------------------------------------------
...........................................................................................................................GGCTGGGAGAGTGGCTCAGA...........................................................................................................2014.004.00------------------1.00-----------------------------------------1.00---------------1.00-----------------------------1.00-----------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCCGT.................................................2214.003.00-1.00--------1.00------1.00---------------------------------------------------------------1.00------------------------------------------
.............................................................................................................................CTGGGAGAGTGGCTCAGAAGAG.......................................................................................................2214.004.00----------1.00---------------2.00------1.00------------------------------------------------------------------------------------------
....................................................................................................................................................................................CTGAGCCGCTGTCCCTGCAGT.................................................2114.004.00------1.00--------1.00----1.00----------------------------------------------------------------------------------------------1.00--------
............................................................................................................................GCTGGGAGAGTGGCTCAGAAG.........................................................................................................2114.004.00----------------------------1.00-----------------1.00--------------------------------------------------------------1.00---------1.00----
.........................................................................................................................................CTCAGAAGAGAGTACCA................................................................................................174.000.00-1.00--------------------1.00-----------------------------1.00--------------------------------------------------------------------1.00--
.....................................................................................................................................................................................TGAGCCGCTGTCCCTGCAGTGT...............................................2214.004.00-------------4.00--------------------------------------------------------------------------------------------------------------
...........................................................................................................................GGCTGGGAGAGTGGCTCAGAAA.........................................................................................................2213.003.00------------------1.00------------------------------------------1.00-----------------------1.00--------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGC.................................................2213.0086.00-1.00-------------------------------2.00------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGCA................................................2313.0086.00-------------------2.00------------------1.00-------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGAT................................................2313.0086.00----1.00--------------------------------------------------1.00----------1.00---------------------------------------------------------
...........................................................................................................................GGCTGGGAGAGTGGCTCAGAA..........................................................................................................2113.003.00--------------------------------------------------------1.00-----------------1.00------------1.00------------------------------------
...........................................................................................................................GGCTGGGAGAGTGGCTCAGAAG.........................................................................................................2213.003.00---1.00----------------1.00--------------------------------------------1.00----------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGC....................................................1913.003.00-1.00---------------------------------------1.00------------------------------------------1.00---------------------------------------
.............................................................................................................................CTGGGAGAGTGGCTCAGAAGAGA......................................................................................................2313.003.00-------3.00--------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................CTGAGCCGCTGTCCCTGCAGTA................................................2212.004.001.00--1.00------------------------------------------------------------------------------------------------------------------------
......................................TAATCTGATGGAGACAGCTGCTCATT..........................................................................................................................................................................................2612.002.00-------------------------------------------------------------------1.00------------------------------------------1.00-------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGAA................................................2312.0086.001.00----------------------------------1.00----------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGTAG...............................................2412.00343.001.00----------------------------------1.00----------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGATT...............................................2412.0086.002.00---------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGTC................................................2312.00343.00-------1.00----------1.00---------------------------------------------------------------------------------------------------------
...............................................................................................................................................................TGGGGAGGAAGGGGCTA..........................................................................172.000.00-------------------------------1.00------------------------------1.00-------------------------------------------------------------
...........................................................................................................................GGCTGGGAGAGTGGCTCAGAAGA........................................................................................................2312.002.00------------------------------------------------------------------------1.00-----------------------------------------------1.00---
.....................................................................................................................................................................................TGAGCCGCTGTCCCTGCAG..................................................1912.002.002.00---------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGTTA...............................................2412.00343.00------------------------------------------------1.00--1.00------------------------------------------------------------------------
............................................................................................................................................................................................................TGAACGAGTTGAACCAGTGGCTG.......................2312.002.00------------------------------------------------------2.00---------------------------------------------------------------------
............................................................................................................................GCTGGGAGAGTGGCTCAGA...........................................................................................................1911.001.00------------------------------------------------------------1.00---------------------------------------------------------------
..........................................................................................................................................................................................................TGTGAACGAGTTGAACCAGTGGCTG.......................2511.001.00-------------------------------------------------------------------------1.00--------------------------------------------------
...........................................TGATGGAGACAGCTGCTCATTTGATC.....................................................................................................................................................................................2611.001.00------------------------------------1.00---------------------------------------------------------------------------------------
.......................................................................................................................................................................................AGCCGCTGTCCCTGCAGTGT...............................................2011.001.00-------------1.00--------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................TGTGAACGAGTTGAACCAGTGGCTGGG.....................2711.001.00----------------------------------------------------------------------------------1.00-----------------------------------------
.................................................................................................................................................................................CTTCTGAGCCGCTGTCCCTGC....................................................2111.001.00-1.00--------------------------------------------------------------------------------------------------------------------------
.........................................................................................TAGCTTCTTTGTACCAAGTGGAGAGTC......................................................................................................................................2711.001.00---------------------------------------------------------------------------------------------1.00------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGTAGT..............................................2511.00343.00----------------------------------------------------------------------------------------------1.00-----------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCCGA.................................................2211.003.00-1.00--------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................GGGGCTGGGAGAGTGGAT...............................................................................................................181.000.00-------------------------------------------------------------------------------------------------------1.00--------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGAAA...............................................2411.0086.00---------------------------------------------------------------------------------------------------1.00------------------------
...............................................................................................................................................................TGGGGAGGAAGGGGCGCTC........................................................................191.000.00------------------------------------------------------------------------------1.00---------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAAT.................................................2211.007.00-----------------------------------------------------------------1.00----------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGTAGT.................................................221.000.00----1.00-----------------------------------------------------------------------------------------------------------------------
...............................................................................................................................GGGAGAGTGGCTCAGTTC.........................................................................................................181.000.00-----------------------------------------------------------------------------1.00----------------------------------------------
.........................................................................................................................GGGGCTGGGAGAGTGGCTCAGAAG.........................................................................................................2411.001.00--------------------------------------------------1.00-------------------------------------------------------------------------
.....................................................................................................................................................................................TGAGCCGCTGTCCCTGCAGTT................................................2111.001.00--------------------------------------1.00-------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGTCA...............................................2411.00343.001.00---------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................TGTGAACGAGTTGAACCAGTGGCTGG......................2611.001.00----------------------------------------------------------------------------------------1.00-----------------------------------
..................................................................................................................................................................................TTCTGAGCCGCTGTCCCTGCCTGA................................................241.000.00---------------------------------------1.00------------------------------------------------------------------------------------
....................................................................................................................................................................................CTGAGCCGCTGTCCCTGCAGAA................................................221.000.00------------------1.00---------------------------------------------------------------------------------------------------------
...........................................................................................................................................CAGAAGAGAGTACCTGGCTCTGGGGAGGAAGGGGCAGACTTCTGAGCCGCTGTCCCTGCA...................................................6011.001.00---------------------------------------------------------------------------1.00------------------------------------------------
...............................................................................................................................................................TGGGGAGGAAGGGGCGTAG........................................................................191.000.00-------------------------------1.00--------------------------------------------------------------------------------------------
.....................................................................................................................................................................................TGAGCCGCTGTCCCTGCTTT.................................................201.000.00-------------1.00--------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................GTGTGTGAACGAGTTGAACCAGTGGC.........................2611.001.00------------------------------------1.00---------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGTAAA..............................................2511.00343.00--------------------------------------------------------------------------------------------------------------------1.00-------
...........................................................................................................................GGCTGGGAGAGTGGCTCAGAAGTA.......................................................................................................2411.003.00--------------------------------------------------------------------------------------------------------1.00-------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGTATA..............................................2511.00343.00--------------------------------------------------------------------------------1.00-------------------------------------------
...............................................................................................................................................................TGGGGAGGAAGGGGCGACG........................................................................191.000.00-------------------------------------------------------------------------------1.00--------------------------------------------
...............................................................................................................................................................................................................ACGAGTTGAACCAGTGGCTGTCTGCATTG..............2911.001.00--------------------------------------------------------------------1.00-------------------------------------------------------
...........................................................................................................................................................................................GCTGTCCCTGCAGTGGGC.............................................181.000.00------------------------------------------------------------------------------------------1.00---------------------------------
.....................................................................................................................................................................................TGAGCCGCTGTCCCTGCAGCAA...............................................2211.002.00-----------------1.00----------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGGTC...............................................2411.0086.00----------1.00-----------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................TGAGCCGCTGTCCCTGCAGT.................................................2011.001.00-------------------------------------------------------------1.00--------------------------------------------------------------
........................................................................................................................................................................................................TGTGTGAACGAGTTGAACCAGTGGC.........................2511.001.00-----------------------------------------------1.00----------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGTG................................................2311.001.00------------------------------------------1.00---------------------------------------------------------------------------------
...............................................................................................................................................................TGGGGAGGAAGGGGCTAG.........................................................................181.000.00-------------------------------1.00--------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCGGT.................................................2211.003.00-----------------1.00----------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGGA................................................2311.0086.00-----------------------------------------------------------------------------------------------------1.00----------------------
..........................................................................................................................GGGCTGGGAGAGTGGCTCAGAAG.........................................................................................................2311.001.001.00---------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGTAAT..............................................2511.00343.00--------------1.00-------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................TGAGCCGCTGTCCCTGCAGTTT...............................................2211.001.00--------------------------------------1.00-------------------------------------------------------------------------------------
........................................................................................................................................................................................................................ACCAGTGGCTGTCTGCATGA..............201.000.00------------------------------------------------------------------------------------------------------------1.00---------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGAGA...............................................2411.0086.00----------1.00-----------------------------------------------------------------------------------------------------------------
...........................................................................................................................GGCTGGGAGAGTGGCTCAGAAGT........................................................................................................2311.003.00---------------------------------------------------------------------------------------------------------1.00------------------
...............................................................................................................................................................TGGGGAGGAAGGGGCGGT.........................................................................181.000.00-------------------------------1.00--------------------------------------------------------------------------------------------
...........................................................................................................................GGCTGGGAGAGTGGCTCAGAT..........................................................................................................2111.004.00------------------------------------------------------------------------------------------------------1.00---------------------
.............................................................................................................................CTGGGAGAGTGGCTCAGAATAG.......................................................................................................221.000.00---------------------------------------------------------------------------------------------------------------------1.00------
......................................TAATCTGATGGAGACAGCTGCTCATTT.........................................................................................................................................................................................2711.001.00-------------------------------------------------------------------1.00--------------------------------------------------------
........................................ATCTGATGGAGACAGCTGCTCATTTG........................................................................................................................................................................................2611.001.00------------------------------------1.00---------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCACG.................................................2211.007.00-----------------1.00----------------------------------------------------------------------------------------------------------
...............................................................................................................................................................TGGGGAGGAAGGGGCGCAA........................................................................191.000.00----------------------------------------------------------------------------------------------------------------1.00-----------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCATT.................................................2211.007.00----------------------------1.00-----------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGG.................................................2211.0086.00----------1.00-----------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGAAT...............................................2411.0086.00-----------------------------------------------------------------------------------------------------------------1.00----------
...................................................................................................................................................................................TCTGAGCCGCTGTCCCTGCAGTTT...............................................2411.00343.001.00---------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................TGAGCCGCTGTCCCTGCAGTG................................................2111.001.00-----------------1.00----------------------------------------------------------------------------------------------------------
.........................................................................................................................................................TGGCTCTGGGGAGGAAGGGGCAGAA........................................................................251.000.00------------------------------------------------------------------------------------------------1.00---------------------------
....................................................................................................TACCAAGTGGAGAGTCTGTGAGGGG.............................................................................................................................2511.001.00------------------------------------1.00---------------------------------------------------------------------------------------
..............................................................................................................................................................................................................AACGAGTTGAACCAGTGGCTGTCTGC..................2611.001.00----------------------------------------------------1.00-----------------------------------------------------------------------
..................................................................................................................................................................................................................AGTTGAACCAGTGGC.........................1560.170.17--------------------------------------------------------------------0.17-------------------------------------------------------
..................................................................................................................................................................................................................AGTTGAACCAGTGGCAGAT.....................1960.170.17---------------------------------------------------------------------------------------------------------------------------0.17

Antisense strand
TCATCAATCAAAAATACCCCACAGGCTTCCCCACAGGTTAATCTGATGGAGACAGCTGCTCATTTGATCACCCCATTCCCAGATTGCTCTAGCTTCTTTGTACCAAGTGGAGAGTCTGTGAGGGGCTGGGAGAGTGGCTCAGAAGAGAGTACCTGGCTCTGGGGAGGAAGGGGCAGACTTCTGAGCCGCTGTCCCTGCAGTGTGTGAACGAGTTGAACCAGTGGCTGTCTGCATTGCGCAAAGCGAGCAC
....................................................................................................................................(((((((((((((...((.(((..(((....)))..))).))...)))))))))))))............................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		mjTestesWT4()
Testes Data. (testes)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		mjTestesWT3()
Testes Data. (testes)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR553584(SRX182790)
source: Heart. (Heart)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		GSM261959(GSM261959)
oocytesmallRNA-19to30. (oocyte)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		mjLiverWT3()
Liver Data. (liver)		SRR206941(GSM723282)
other. (brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR206940(GSM723281)
other. (brain)		SRR553585(SRX182791)
source: Kidney. (Kidney)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		mjTestesWT2()
Testes Data. (testes)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR206942(GSM723283)
other. (brain)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR346415(SRX098256)
source: Testis. (Testes)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR059774(GSM562836)
MEF_control. (MEF)		SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR037910(GSM510447)
newborn_rep3. (total RNA)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR095855BC8(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR014231(GSM319955)
16.5 dpc total. (testes)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)		GSM640582(GSM640582)
small RNA in the liver with paternal control . (liver)		SRR095855BC2(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR525241(SRA056111/SRX170317)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		SRR095855BC1(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR042484(GSM539876)
mouse salivary gland tissue [09-002]. (salivary gland)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR306526(GSM750569)
19-24nt. (ago2 brain)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR065055(SRR065055)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR059776(GSM562838)
MEF_Dicer. (MEF)		SRR014237(GSM319961)
10 dpp MILI-KO total. (mili testes)		SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)		SRR037901(GSM510437)
testes_rep2. (testes)		SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)		SRR095855BC5(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
........................................................................CCATTCCCAGATTGCTCTA............................................................................................................................................................... 1911.001.00-----------------------------------------------1.00----------------------------------------------------------------------------
......................................................................................................................................................................GAAGGGGCAGACTTCTGAGTTC.............................................................. 221.000.00--------------------------------------------------------------------------------------1.00-------------------------------------
..........................................................................................................................................................................................CGCTGTCCCTGCAGTGTAA............................................. 191.000.00----------------------------------------------------------------------------------------------------1.00-----------------------
.................CCCACAGGCTTCCCCACAA...................................................................................................................................................................................................................... 191.000.00--------------------------------------------------------------1.00-------------------------------------------------------------
..........................................................................................................................................................................................................................CAGTGGCTGTCTGCAAGG.............. 181.000.00----------------------------------------------------------------------------------------------------------------------1.00-----