ID: mmu-mir-7027
GENE: Ube3b(13)
chr5:114854349-114854598+


(2)
AGO1.ip
(17)
AGO2.ip
(2)
AGO3.ip
(3)
B-CELL
(31)
BRAIN
(7)
CELL-LINE
(1)
DCR.mut
(3)
DGCR8.mut
(9)
EMBRYO
(7)
ESC
(3)
FIBROBLAST
(2)
HEART
(2)
KIDNEY
(2)
LIVER
(1)
LUNG
(3)
LYMPH
(12)
OTHER
(4)
OTHER.mut
(1)
PANCREAS
(6)
SKIN
(1)
SPLEEN
(15)
TESTES
(1)
THYMUS
(4)
TOTAL-RNA
(1)
UTERUS

Sense strand
AGCTGCTCCCGAGACTGGCAGAGTGGAGCCTGGCGCTTGAGAGCATCTGTCCAGTGTCAGCTGCCCCTGCTGTTGTGGCTCTCCGTGCTCACACCTTCTCTCGCGGGCTGGTTTAAGTGGTGTGCTTTTCCCCTGGAAAGGAAGAAACAGCAGAGCAGCTGGGGTCCCTACATGAAGCTCGGGTTTCTCTCCTCTTCCAGGTCTTACGTACCTGGATGACCTGCTGCCCAAGCTCTGGGCGTTTATCTGT
....................................................................................................................................((((((((((((((((....((((....((....))........))))..)))))).)))).))))))..................................................
................................................................................................................................129....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)
SRR394083(GSM855969)
background strain: C57BL6/SV129cell type: KRa. (cell line)
SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR206940(GSM723281)
other. (brain)
SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)
SRR306542(GSM750585)
19-24nt. (ago2 brain)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR553582(SRX182788)
source: Brain. (Brain)
SRR306532(GSM750575)
19-24nt. (ago2 brain)
SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)
SRR073954(GSM629280)
total RNA. (blood)
mjTestesWT3()
Testes Data. (testes)
SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR206942(GSM723283)
other. (brain)
SRR206941(GSM723282)
other. (brain)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR306533(GSM750576)
19-24nt. (ago2 brain)
SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)
SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)
GSM510444(GSM510444)
brain_rep5. (brain)
SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)
SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)
Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
mjTestesWT4()
Testes Data. (testes)
SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)
SRR038741(GSM527276)
small RNA-Seq. (brain)
SRR206939(GSM723280)
other. (brain)
GSM510455(GSM510455)
newborn_rep11. (total RNA)
SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)
SRR037905(GSM510441)
brain_rep2. (brain)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
SRR037937(GSM510475)
293cand2. (cell line)
SRR306541(GSM750584)
19-24nt. (ago2 brain)
SRR039610(GSM527274)
small RNA-Seq. (brain)
SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)
GSM510456(GSM510456)
newborn_rep12. (total RNA)
SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)
SRR306543(GSM750586)
19-24nt. (ago2 brain)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)
SRR306537(GSM750580)
19-24nt. (ago2 brain)
mjTestesWT1()
Testes Data. (testes)
SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)
SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)
SRR306544(GSM750587)
19-24nt. (ago2 brain)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)
Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)
SRR306539(GSM750582)
19-24nt. (ago2 brain)
SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)
SRR346415(SRX098256)
source: Testis. (Testes)
GSM510453(GSM510453)
newborn_rep9. (total RNA)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)
SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR037928(GSM510466)
e7p5_rep2. (embryo)
SRR306534(GSM750577)
19-24nt. (ago2 brain)
SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)
SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)
SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)
SRR059765(GSM562827)
DN3_control. (thymus)
SRR037929(GSM510467)
e7p5_rep3. (embryo)
SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)
SRR306536(GSM750579)
19-24nt. (ago2 brain)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)
SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
SRR037907(GSM510443)
brain_rep4. (brain)
SRR077864(GSM637801)
18-30 nt small RNAs. (liver)
RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)
SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)
Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
SRR073955(GSM629281)
total RNA. (blood)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
SRR306530(GSM750573)
19-24nt. (ago2 brain)
SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR095855BC6(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR553585(SRX182791)
source: Kidney. (Kidney)
SRR306540(GSM750583)
19-24nt. (ago2 brain)
SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)
Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
SRR037912(GSM510449)
newborn_rep5. (total RNA)
GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)
GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)
SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)
SRR306531(GSM750574)
19-24nt. (ago2 brain)
SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR306535(GSM750578)
19-24nt. (ago2 brain)
Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)
SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)
SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR402760(SRX117943)
source: ES E14 male cells. (ESC)
SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)
..................................................................................................................................................................................TCGGGTTTCTCTCCTCTTCCAGT.................................................23151.0017.00--2.00--1.002.003.00-2.005.001.00--3.001.001.00-3.001.00-2.00----1.00----1.00---1.00--2.00-2.00----2.00--1.00---1.001.00---1.00-1.001.00---1.001.00-------------1.001.00-1.001.00-1.00----------------1.00-----1.00--
.....................................................................................................................................TGGAAAGGAAGAAACAGCAGAGC..............................................................................................23130.0030.00--2.00-4.002.001.00-3.00--2.00-4.002.001.00----4.00----3.00---------------------1.00---------------------------------1.00-----------------------------
..................................................................................................................................................................................TCGGGTTTCTCTCCTCTTCCAG..................................................22117.0017.00-13.00-1.00-----1.00-----------1.00----1.00------------------------------------------------------------------------------------
....................................................................................................................................CTGGAAAGGAAGAAACAGCAGAGC..............................................................................................24110.0010.00--1.00-2.00------1.00-----------1.00----1.00----------------------1.00--1.00-----------1.00---------------------------------1.00----------
......................GTGGAGCCTGGCGCTAAAC.................................................................................................................................................................................................................1910.000.003.00--4.00-----------1.00----------------1.00------------------------------------------------------1.00-----------------------
..................................................................................................................................................................................TCGGGTTTCTCTCCTCTTCCAGTT................................................24110.0017.00------2.003.00----------------1.00------1.00-1.00--------------------------------------1.00----1.00---------------------------------
......................GTGGAGCCTGGCGCTAGAC.................................................................................................................................................................................................................198.000.002.00--2.00---------1.00--2.00---------------1.00------------------------------------------------------------------------------
..................................................................................................................................................................................TCGGGTTTCTCTCCTCTTCCAGA.................................................2318.0017.00-----1.00--1.00--1.00-----2.00------1.00----------1.00---------------------------------------------------------1.00-----------------
.....................................................................................................................................TGGAAAGGAAGAAACAGCAGAG...............................................................................................2217.007.00-------1.001.002.00--------------------1.00------------------------------------1.00------------------------------1.00------------
....................................................................................................................................CTGGAAAGGAAGAAACAGCAGAG...............................................................................................2316.006.00--2.00------2.00-1.00--------------------------------------------------------------------------------1.00------------------
..................................................................................................................................................................................TCGGGTTTCTCTCCTCTTCCATT.................................................235.000.00--1.00---------------------1.00-1.00----------1.00---1.00---------------------------------------------------------------------
.....................................................................................................................................TGGAAAGGAAGAAACAGCAGAGCT.............................................................................................2415.0030.00--------1.00----------------------------------1.00------------1.00-----------1.001.00-----------------------------------------
....................................................................................................................................CTGGAAAGGAAGAAACAGCAGA................................................................................................2215.005.00--1.001.00------1.00-----------------------------------------------------------------------------------1.00----1.00-----------
...................................................................................................................................CCTGGAAAGGAAGAAACAGCAGA................................................................................................2314.004.00-----------------1.00--------------------------------2.00----------------------------------------------------1.00-------
..................................................................................................................................CCCTGGAAAGGAAGAAACAGCAGA................................................................................................2414.004.00-----1.00------------1.00-----------1.00----------------------------------------1.00---------------------------------------
..............................................................................................................................................................CTGGGGTCCCTACATGAAA.........................................................................194.000.00----------------------4.00----------------------------------------------------------------------------------------
...................................................................................................................................CCTGGAAAGGAAGAAACAGCAG.................................................................................................2213.003.00-------------------1.00-------------1.00------------------------------------------1.00----------------------------------
..................................................................................................................................................................................TCGGGTTTCTCTCCTCTTCCAGTA................................................2413.0017.00---1.00------1.00--------------------------------------------1.00-------------------------------------------------------
......................GTGGAGCCTGGCGCTATAC.................................................................................................................................................................................................................193.000.003.00--------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TCGGGTTTCTCTCCTCTTCCAGTC................................................2413.0017.00--1.001.00--1.00--------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TCGGGTTTCTCTCCTCTTCCAGC.................................................2313.0017.00------2.00-----------------------------------------------------------------------------------1.00--------------------
......................GTGGAGCCTGGCGCTTGAGA................................................................................................................................................................................................................2013.003.00---------------------------3.00-----------------------------------------------------------------------------------
....................................................................................................................................CTGGAAAGGAAGAAACAGCAG.................................................................................................2112.002.00-------------------------------------------------2.00-------------------------------------------------------------
..................................................................................................................................................................................TCGGGTTTCTCTCCTCTTCCAAT.................................................232.000.00------------1.00-------------------------------------------------------------------------1.00------------------------
......................GTGGAGCCTGGCGCTAGGC.................................................................................................................................................................................................................192.000.002.00--------------------------------------------------------------------------------------------------------------
..................................................................................................................................CCCTGGAAAGGAAGAAACAGCAG.................................................................................................2312.002.00---------------------1.00---------------------------------------------------1.00-------------------------------------
......................GTGGAGCCTGGCGCTAACC.................................................................................................................................................................................................................192.000.002.00--------------------------------------------------------------------------------------------------------------
......................GTGGAGCCTGGCGCTA....................................................................................................................................................................................................................162.000.00-----------------------2.00---------------------------------------------------------------------------------------
...................................................................................................................................CCTGGAAAGGAAGAAACAGC...................................................................................................2012.002.00--------------------------------------------------------------1.00----------------------------1.00-------------------
..................................................................................................................................................................................TCGGGTTTCTCTCCTCTTCCATTT................................................242.000.00-----------------------------1.00----------------------------------------------------------1.00----------------------
..................................................................................................................................................................................TCGGGTTTCTCTCCTCTTCC....................................................2012.002.00------------------------------------------------------------------------------1.00----------------------1.00---------
.................................................................................................................................................................................................................ACCTGGATGACCTGCTGCCCAAGCTCTGGG...........3012.002.00------------------------------------------2.00--------------------------------------------------------------------
....................................................................................................................................................................................GGGTTTCTCTCCTCTTCCAGTTT...............................................232.000.00----------------------------------2.00----------------------------------------------------------------------------
.....................................................................................................................................TGGAAAGGAAGAAACAGCAGAGCA.............................................................................................2412.002.00------------1.00---------------------------------------------1.00----------------------------------------------------
....................................................................................................................................CTGGAAAGGAAGAAACAGCAGAGA..............................................................................................2412.006.00----------------------------2.00----------------------------------------------------------------------------------
.....................................................................................................................................TGGAAAGGAAGAAACAGCAGAGA..............................................................................................2312.007.00--1.00------------1.00-----------------------------------------------------------------------------------------------
..................................................................................................................................................................................TCGGGTTTCTCTCCTCTTCCAGTTT...............................................2512.0017.00-------------------------------------------1.00----------------------------------------------------1.00--------------
...................................................................................................................................CCTGGAAAGGAAGAAACAGCAGAGCAGCTGG........................................................................................3111.001.00-------------------------------------------------------------1.00-------------------------------------------------
...................................................................TGCTGTTGTGGCTCTAG......................................................................................................................................................................171.000.001.00--------------------------------------------------------------------------------------------------------------
.....................................................................................................................................TGGAAAGGAAGAAACAGCAGA................................................................................................2111.001.00----1.00----------------------------------------------------------------------------------------------------------
............................................................................................................................................................AGCTGGGGTCCCTACATGAAGC........................................................................2211.001.00---------------------------------------------------------------1.00-----------------------------------------------
...................................................................................................................................CCTGGAAAGGAAGAAACAGCAGAGCT.............................................................................................2611.001.00-----------1.00---------------------------------------------------------------------------------------------------
..............................................................................................................GTTTAAGTGGTGTGCTCGGG........................................................................................................................201.000.00-----------------------------------------1.00---------------------------------------------------------------------
...................................................................................................................................CCTGGAAAGGAAGAAACAGCAGAGA..............................................................................................2511.001.00-------1.00-------------------------------------------------------------------------------------------------------
....................................................................................................................................................AGCAGAGCAGCTGGGGTGC...................................................................................191.000.00-------------------------------------1.00-------------------------------------------------------------------------
..........................................................................................................................................................................................................CTTACGTACCTGGATGACCTGC..........................2211.001.00------------------------------------1.00--------------------------------------------------------------------------
..................................................................................................................................................................................TCGGGTTTCTCTCCTCTTCCAGAAC...............................................2511.0017.00------------1.00--------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TCGGGTTTCTCTCCTCTTCCAGAT................................................2411.0017.00--------------------------------------------------------------------------------------------------------1.00------
.....................................................................................................................................TGGAAAGGAAGAAACAGCAGAGT..............................................................................................2311.007.00-----1.00---------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TCGGGTTTCTCTCCTC........................................................1611.001.00-------------------------------------------------------------------------------------------------1.00-------------
......................GTGGAGCCTGGCGCTTTCC.................................................................................................................................................................................................................191.000.001.00--------------------------------------------------------------------------------------------------------------
.....................................................................................................................................TGGAAAGGAAGAAACAGCAGAGCTT............................................................................................2511.0030.00--------1.00------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................TACGTACCTGGATGACCTGCTGCCC.....................2511.001.00-------------1.00-------------------------------------------------------------------------------------------------
..................................................................................................................................................................................TCGGGTTTCTCTCCTCTTCCCG..................................................2211.002.00-1.00-------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................TACCTGGATGACCTGCTGCCCAAGCT................2611.001.00---------------------------------------------------------------------------1.00-----------------------------------
...................................................................TGCTGTTGTGGCTCTCCGTGCTCA...............................................................................................................................................................2411.001.00------------------------------------1.00--------------------------------------------------------------------------
..............................................................................................................................................AGAAACAGCAGAGCACGG..........................................................................................181.000.00-----------------------------------------------------------------------------------------------1.00---------------
...................................................................................................................................CCTGGAAAGGAAGAAACA.....................................................................................................1811.001.00--------------------------------------------1.00------------------------------------------------------------------
.................................................................................................................................................................................CTCGGGTTTCTCTCCTCTTCCAGT.................................................241.000.00-----------------------------------------------1.00---------------------------------------------------------------
....................................................................................................................................CTGGAAAGGAAGAAACAGCAGAA...............................................................................................2311.005.00-----------------------------------------------------------------------------------------1.00---------------------
....................................................................................................................................CTGGAAAGGAAGAAACAGCA..................................................................................................2011.001.00-------------------1.00-------------------------------------------------------------------------------------------
...................................................................................................................................CCTGGAAAGGAAGAAACAGCAGAG...............................................................................................2411.001.00------------------------------------------------1.00--------------------------------------------------------------
....................................................................................................................................................................TCCCTACATGAAGCTCGG....................................................................1811.001.00--------------------------------------------------------------------------1.00------------------------------------
.................................................................................................................................................................................CTCGGGTTTCTCTCCTCTTCT....................................................211.000.00-----------------------------------------------------1.00---------------------------------------------------------
.............................................................................................................................................................................................................ACGTACCTGGATGACCTGCT.........................2011.001.00-----1.00---------------------------------------------------------------------------------------------------------
.................................................................................................................................CCCCTGGAAAGGAAGAAACAGCA..................................................................................................2311.001.00----------------------------------------------1.00----------------------------------------------------------------
..................................................................................................................................................................................TCGGGTTTCTCTCCTCTTCCAGTTC...............................................2511.0017.00------------1.00--------------------------------------------------------------------------------------------------
....................................................................................................................................CTGGAAAGGAAGAAACAGCAGAGT..............................................................................................2411.006.00---------------------------------------------------1.00-----------------------------------------------------------
....................................................................................................................................................................................................................................CAAGCTCTGGGCGTTTAT....1811.001.00----------------1.00----------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................GACCTGCTGCCCAAGCTCTGGGCGT........2511.001.00-----1.00---------------------------------------------------------------------------------------------------------
...................................................................................................................................CCTGGAAAGGAAGAAACAGCA..................................................................................................2111.001.00-------------------1.00-------------------------------------------------------------------------------------------
....................................................................................................................................CTGGAAAGGAAGAAACAGCAGAGCT.............................................................................................2511.0010.00----1.00----------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................GTCTTACGTACCTGGATGAC..............................2011.001.00---------------1.00-----------------------------------------------------------------------------------------------
......................GTGGAGCCTGGCGCTTA...................................................................................................................................................................................................................171.000.00-----------------------------------------------------------------------------------------------------------1.00---
....................GAGTGGAGCCTGGCGCTTGTAAA...............................................................................................................................................................................................................231.000.00-----------------------------1.00---------------------------------------------------------------------------------
......................GTGGAGCCTGGCGCTAA...................................................................................................................................................................................................................171.000.00------------------------------------------------------1.00--------------------------------------------------------
.............................................................................................................................................................................................................ACGTACCTGGATGACCTGCTGCCCAAGC.................2811.001.00------------------------------------------------------------------------------------1.00--------------------------
..................................................................................................................................................................................TCGGGTTTCTCTCCTCTTCCAT..................................................221.000.00----------------------------------------------------------------------------------------------------------1.00----
.......................................................................................................................................................................................TTTCTCTCCTCTTCCAGT.................................................181.000.00----------------------------------------------------1.00----------------------------------------------------------
...................................................................................................................................CCTGGAAAGGAAGAAACAGCAA.................................................................................................2211.001.00--------------------------------------------1.00------------------------------------------------------------------
.................................................................................................................................CCCCTGGAAAGGAAGAAACAGCAG.................................................................................................2411.001.00----1.00----------------------------------------------------------------------------------------------------------
......................GTGGAGCCTGGCGCTTGAGAGCATCTGTC.......................................................................................................................................................................................................2911.001.00----------------------------------------------------------------------1.00----------------------------------------
......................GTGGAGCCTGGCGCTAGA..................................................................................................................................................................................................................181.000.00-----------------1.00---------------------------------------------------------------------------------------------
................................................................................................................................................................................................................TACCTGGATGACCTGCTGCCC.....................2111.001.00---------------------------------------------------------------------------------------------------------1.00-----
...................................................................................................................................CCTGGAAAGGAAGAAACAGCAGAGC..............................................................................................2511.001.00-----1.00---------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................CGGGTTTCTCTCCTCCAGT....................................................191.000.00----1.00----------------------------------------------------------------------------------------------------------
.....................................................................................................................................TGGAAAGGAAGAAACAGCAGACA..............................................................................................2311.001.00----------------1.00----------------------------------------------------------------------------------------------
...................................................................................................................................................................................CGGGTTTCTCTCCTCTTCCAGTTT...............................................241.000.00----------------------------------------------1.00----------------------------------------------------------------
......................GTGGAGCCTGGCGC......................................................................................................................................................................................................................1460.330.33-------------------------------------------------------------------------------------------------------------0.33-
...................................................................................................................................................................................................................CTGGATGACCTGCTGC.......................1640.250.25--------0.25------------------------------------------------------------------------------------------------------

Antisense strand
AGCTGCTCCCGAGACTGGCAGAGTGGAGCCTGGCGCTTGAGAGCATCTGTCCAGTGTCAGCTGCCCCTGCTGTTGTGGCTCTCCGTGCTCACACCTTCTCTCGCGGGCTGGTTTAAGTGGTGTGCTTTTCCCCTGGAAAGGAAGAAACAGCAGAGCAGCTGGGGTCCCTACATGAAGCTCGGGTTTCTCTCCTCTTCCAGGTCTTACGTACCTGGATGACCTGCTGCCCAAGCTCTGGGCGTTTATCTGT
....................................................................................................................................((((((((((((((((....((((....((....))........))))..)))))).)))).))))))..................................................
................................................................................................................................129....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)
SRR394083(GSM855969)
background strain: C57BL6/SV129cell type: KRa. (cell line)
SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR206940(GSM723281)
other. (brain)
SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)
SRR306542(GSM750585)
19-24nt. (ago2 brain)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR553582(SRX182788)
source: Brain. (Brain)
SRR306532(GSM750575)
19-24nt. (ago2 brain)
SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)
SRR073954(GSM629280)
total RNA. (blood)
mjTestesWT3()
Testes Data. (testes)
SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR206942(GSM723283)
other. (brain)
SRR206941(GSM723282)
other. (brain)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
SRR306533(GSM750576)
19-24nt. (ago2 brain)
SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)
SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)
GSM510444(GSM510444)
brain_rep5. (brain)
SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)
SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)
Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
mjTestesWT4()
Testes Data. (testes)
SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)
SRR038741(GSM527276)
small RNA-Seq. (brain)
SRR206939(GSM723280)
other. (brain)
GSM510455(GSM510455)
newborn_rep11. (total RNA)
SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)
SRR037905(GSM510441)
brain_rep2. (brain)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
SRR037937(GSM510475)
293cand2. (cell line)
SRR306541(GSM750584)
19-24nt. (ago2 brain)
SRR039610(GSM527274)
small RNA-Seq. (brain)
SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)
GSM510456(GSM510456)
newborn_rep12. (total RNA)
SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)
SRR306543(GSM750586)
19-24nt. (ago2 brain)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)
SRR306537(GSM750580)
19-24nt. (ago2 brain)
mjTestesWT1()
Testes Data. (testes)
SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)
SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)
SRR306544(GSM750587)
19-24nt. (ago2 brain)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)
Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)
SRR306539(GSM750582)
19-24nt. (ago2 brain)
SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)
SRR346415(SRX098256)
source: Testis. (Testes)
GSM510453(GSM510453)
newborn_rep9. (total RNA)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR023851(GSM307160)
ZHBT-c412hsmallrna_rep1. (cell line)
SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR037928(GSM510466)
e7p5_rep2. (embryo)
SRR306534(GSM750577)
19-24nt. (ago2 brain)
SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)
SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)
SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)
SRR059765(GSM562827)
DN3_control. (thymus)
SRR037929(GSM510467)
e7p5_rep3. (embryo)
SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)
SRR306536(GSM750579)
19-24nt. (ago2 brain)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR014235(GSM319959)
2 dpp total. (testes)
SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)
SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
SRR037907(GSM510443)
brain_rep4. (brain)
SRR077864(GSM637801)
18-30 nt small RNAs. (liver)
RuiDGCR8KO(Rui)
DGCR8-dependent microRNA biogenesis is essent. (dgcr8 skin)
SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)
Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
SRR073955(GSM629281)
total RNA. (blood)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
SRR306530(GSM750573)
19-24nt. (ago2 brain)
SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR095855BC7(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR095855BC6(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR553585(SRX182791)
source: Kidney. (Kidney)
SRR306540(GSM750583)
19-24nt. (ago2 brain)
SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)
Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
SRR042483(GSM539875)
mouse muscle tissue [09-002]. (muscle)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
SRR037912(GSM510449)
newborn_rep5. (total RNA)
GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)
GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)
SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)
SRR306531(GSM750574)
19-24nt. (ago2 brain)
SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR306535(GSM750578)
19-24nt. (ago2 brain)
Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)
SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)
SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR402760(SRX117943)
source: ES E14 male cells. (ESC)
SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)
.................................................................................................................................................................GGGTCCCTACATGAAAAA....................................................................... 183.000.00------------1.00--------------------------2.00-----------------------------------------------------------------------
.................................................................................................................................................................GGGTCCCTACATGAAAAC....................................................................... 182.000.00------------2.00--------------------------------------------------------------------------------------------------
.............................................................................................................................................AAGAAACAGCAGAGCAG............................................................................................ 1790.110.11-----------------------------0.11---------------------------------------------------------------------------------
.................................................................................................................................................................................................................ACCTGGATGACCTGC.......................... 15100.100.10--------------------------------------------------------------------------------------------------------------0.10