ID: mmu-mir-7023
GENE: Pik3cd(12)
chr4:149029563-149029739-


(1)
AGO.mut 		(1)
AGO1.ip 		(10)
AGO2.ip 		(2)
AGO3.ip 		(11)
B-CELL 		(23)
BRAIN 		(2)
CELL-LINE 		(1)
DCR.mut 		(1)
EMBRYO 		(2)
ESC 		(1)
FIBROBLAST 		(4)
LIVER 		(4)
LYMPH 		(12)
OTHER 		(1)
OTHER.mut 		(3)
SKIN 		(10)
SPLEEN 		(5)
TESTES 		(3)
THYMUS 		(2)
TOTAL-RNA

Sense strand
TCCTGGAGCTGGGGCGTCACGGGGAGCGTGGGCGCATCACGGAGGAGGAGGTGAGCTCCGGTCTTGGAATGGGGGAGCTGGGATTGGGCGTGGAGCTTGGAGGCCTCACCCTGTCTGCGCCCCTCAGCAGCTGCAGCTGCGGGAGATCCTGGAACGGCGGGGATCCGGGGAACTGTA
.....................................................................((((((.((..(((.((((.(((..(((....)))..))))))))))..))))))))...................................................
...............................................................64.............................................................127................................................
SizePerfect hitTotal NormPerfect NormSRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR525244(SRA056111/SRX170320)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		GSM640582(GSM640582)
small RNA in the liver with paternal control . (liver)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR206939(GSM723280)
other. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		mjLiverWT3()
Liver Data. (liver)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR037904(GSM510440)
brain_rep1. (brain)		SRR060845(GSM561991)
total RNA. (brain)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR206940(GSM723281)
other. (brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		mjTestesWT2()
Testes Data. (testes)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR059768(GSM562830)
Treg_control. (spleen)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR525238(SRA056111/SRX170314)
Second IgG control. (Blood)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)
.........................................................................................................TCACCCTGTCTGCGCCCCTCAGT.................................................23155.0011.0022.00-1.005.00--2.001.002.001.00---------1.004.001.00--------3.00-1.00---2.00-------1.00---1.00-------1.00--1.00-1.00---1.001.00---1.00-----1.00------
..........................................................................................................CACCCTGTCTGCGCCCCTCAGT.................................................22126.005.009.00--1.00-1.004.002.00--2.00---1.00---1.00-------------1.001.00--------------------1.00---------1.00-------1.00----------
....................................................................ATGGGGGAGCTGGGATTGGGCGT......................................................................................23116.0016.001.002.004.00-2.001.00--1.00----1.00-1.00-1.00-----1.00-----------------------1.00-----------------------------------
....................................................................ATGGGGGAGCTGGGATTGGGCGTGT....................................................................................25112.004.001.004.001.00-1.001.00---1.00-1.00---------1.00----1.00--------------------------------------------------------
.........................................................................................................TCACCCTGTCTGCGCCCCTCAG..................................................22111.0011.003.00------1.002.00-----1.00----1.00----2.00---------------------1.00------------------------------------
...........................................................................................................ACCCTGTCTGCGCCCCTCAGT.................................................2110.000.003.001.00-1.001.00--1.00----------1.00--------------------------------1.00---------------------1.00---------
....................................................................ATGGGGGAGCTGGGATTGG..........................................................................................1916.006.001.00---2.00---------------------1.00------1.00---------------------------------1.00---------------
.........................................................................................................................................TGCGGGAGATCCTGGATAGG....................206.000.00----------------------1.00------2.00----2.00---1.00--------------------------------------------
....................................................................ATGGGGGAGCTGGGATTGGG.........................................................................................2015.005.00-1.001.001.001.00------------------1.00-----------------------------------------------------------
..........................................................................................................CACCCTGTCTGCGCCCCTCAG..................................................2115.005.002.00-2.00------------------------------------------1.00-------------------------------------
....................................................................ATGGGGGAGCTGGGATTGGGCGTG.....................................................................................2414.004.001.001.00------1.00-------1.00------------------------------------------------------------------
....................................................................ATGGGGGAGCTGGGATTGGGCGTAA....................................................................................2514.0016.00-2.00--1.00--------------------------------1.00---------------------------------------------
....................................................................ATGGGGGAGCTGGGATTGGGCGTT.....................................................................................2414.0016.001.001.00--1.00------------------------------------1.00-----------------------------------------
.........................................................................................................TCACCCTGTCTGCGCCCCTC....................................................2014.004.002.00------1.00---------------------------------------------------------------------1.00-----
.....................................................................TGGGGGAGCTGGGATTGGGCGTG.....................................................................................2314.004.00--------1.00------------------1.00----------1.001.00-------------------------------------------
.....................................................................TGGGGGAGCTGGGATTGGGCGTGT....................................................................................2413.004.00-1.00---1.00---------------1.00-------------------------------------------------------------
...........................................................................................................ACCCTGTCTGCGCCCCTCAGTT................................................223.000.001.00------1.00--------------------1.00------------------------------------------------------
.........................................................................................................TCACCCTGTCTGCGCCCCTCAGA.................................................2313.0011.00-----1.00---------1.00------------------------------1.00------------------------------------
....................................................................ATGGGGGAGCTGGGATTGGGCGTGG....................................................................................2513.003.00--1.00--------------------1.00---1.00-------------------------------------------------------
.....................................................................TGGGGGAGCTGGGATTGGG.........................................................................................1913.003.00-2.00---------1.00-----------------------------------------------------------------------
.........................................................................................................................................TGCGGGAGATCCTGGAACGGCT..................223.000.00----------------------2.00------------------------------1.00-----------------------------
..........................................................................................................CACCCTGTCTGCGCCCCTCAGTTT...............................................2413.005.001.00--1.00----------------------1.00--------------------------------------------------------
..........................................................................................................CACCCTGTCTGCGCCCCTCAGTA................................................2313.005.00---1.00--2.00----------------------------------------------------------------------------
....................................................................ATGGGGGAGCTGGGATTGGGCGTGA....................................................................................2513.004.00--2.00------------------------1.00-------------------------------------------------------
....................................................................ATGGGGGAGCTGGGATTGGGTAT......................................................................................2312.005.00--1.00----------1.00---------------------------------------------------------------------
.....................................................................TGGGGGAGCTGGGATTGGGCG.......................................................................................2112.002.00-1.00------------------------------1.00--------------------------------------------------
.....................................................................TGGGGGAGCTGGGATTGGGCGTGAT...................................................................................2512.004.00-----------------1.00---1.00-------------------------------------------------------------
...........................................................................................................ACCCTGTCTGCGCCCCTCAGTA................................................222.000.00-----------1.00-----1.00-----------------------------------------------------------------
................................CGCATCACGGAGGAGGAG...............................................................................................................................1812.002.00-------------2.00---------------------------------------------------------------------
..........................................................................................................CACCCTGTCTGCGCCCCTCAGA.................................................2212.005.00--------------------------------------------------------------1.00------1.00-------------
..........................................................................................................CACCCTGTCTGCGCCCCTCA...................................................2012.002.001.00------------------------------------------------------1.00---------------------------
...................................................................AATGGGGGAGCTGGGATTGG..........................................................................................2012.002.00--1.00------------1.00-------------------------------------------------------------------
.....................................................................TGGGGGAGCTGGGATTGGGCGTT.....................................................................................2312.001.00-1.00------------------------------------------1.00--------------------------------------
..........................................................................................................CACCCTGTCTGCGCCCCTCAGTTAA..............................................2512.005.00----------------------------2.00------------------------------------------------------
..................................................GTGAGCTCCGGTCTTGGAATGGGGGAGCTGGGATTGGGCGTGGAGCTTGGAGGCCTC......................................................................5712.002.00------------2.00----------------------------------------------------------------------
....................................................................ATGGGGGAGCTGGGATTGGGC........................................................................................2112.002.00---1.00-------------------------------------------1.00-----------------------------------
.................................GCATCACGGAGGAGGAG...............................................................................................................................1712.002.00----------------------------------------2.00------------------------------------------
....................................................................ATGGGGGAGCTGGGATTGGAA........................................................................................2112.006.00------------------------2.00----------------------------------------------------------
.........................................................................................................................................TGCGGGAGATCCTGGATTGG....................202.000.00----------------------1.00------1.00-----------------------------------------------------
...................................................................AATGGGGGAGCTGGGATTGGGCGT......................................................................................2412.002.00--2.00--------------------------------------------------------------------------------
.........................................................................................................TCACCCTGTCTGCGCCCCTCAT..................................................2212.001.00---1.00-----------------------------------------1.00-------------------------------------
....................................................................ATGGGGGAGCTGGGATTG...........................................................................................1821.501.50-1.00---0.50-----------------------------------------------------------------------------
....................................................................ATGGGGGAGCTGGGATTGGGCGTTTT...................................................................................2611.0016.00---------1.00-------------------------------------------------------------------------
...................................................................AATGGGGGAGCTGGGATTG...........................................................................................1911.001.00-1.00---------------------------------------------------------------------------------
....................................................................ATGGGGGAGCTGGGATTGGT.........................................................................................2011.006.00--1.00--------------------------------------------------------------------------------
....................................................................ATGGGGGAGCTGGGATTGGGCGTGTATA.................................................................................2811.004.00--1.00--------------------------------------------------------------------------------
.........................................................................................................TCACCCTGTCTGCGCCAAGT....................................................201.000.00----1.00------------------------------------------------------------------------------
.....................................................................TGGGGGAGCTGGGATTGGGCGTGTAA..................................................................................2611.004.00--1.00--------------------------------------------------------------------------------
...................................................................AATGGGGGAGCTGGGATTGGGCGTT.....................................................................................2511.002.00-----1.00-----------------------------------------------------------------------------
....................................................................ATGGGGGAGCTGGGATTGGGCGTGTAT..................................................................................2711.004.00-1.00---------------------------------------------------------------------------------
..........................................................................................................CACCCTGTCTGCGCCCCTAT...................................................201.000.00-1.00---------------------------------------------------------------------------------
.........................................................................................................TCACCCTGTCTGCGCCCCTCA...................................................2111.001.001.00----------------------------------------------------------------------------------
.........................................................................................................TCACCCTGTCTGCGCCCCTCAGTA................................................2411.0011.00------------------------------------------------1.00----------------------------------
....................................................................ATGGGGGAGCTGGGATTGGGCGTGAT...................................................................................2611.004.00--1.00--------------------------------------------------------------------------------
....................................................................ATGGGGGAGCTGGGATTGGGCGTAAT...................................................................................2611.0016.00-----------1.00-----------------------------------------------------------------------
...........................................................................................................ACCCTGTCTGCGCCCCTCAGA.................................................211.000.00---------------------------------------------------1.00-------------------------------
...................................................................AATGGGGGAGCTGGGATTGGGCGTGTT...................................................................................271.000.00-------1.00---------------------------------------------------------------------------
......................................................................GGGGGAGCTGGGATTGGAAAA......................................................................................211.000.00---------1.00-------------------------------------------------------------------------
..................................................GTGAGCTCCGGTCTTGGAATGGGGGAGCTGGGATTGGGCGTGGAGCTTGGAGGCCTCACCCTGTCTGCGCCCCTC....................................................7511.001.00------------1.00----------------------------------------------------------------------
...........................................................................................................ACCCTGTCTGCGCCCCTCAGTAT...............................................231.000.00----------------1.00------------------------------------------------------------------
.....................................................................TGGGGGAGCTGGGATTGGGCAA......................................................................................221.000.00--------------------------------------------------------------------1.00--------------
.....GAGCTGGGGCGTCACGGGGAGCGTGGGC................................................................................................................................................2811.001.001.00----------------------------------------------------------------------------------
.........................................................................................................................................TGCGGGAGATCCTGGAAAGGC...................211.000.00-------------------------------1.00---------------------------------------------------
.................................................................................................................................GCTGCAGCTGCGGGAAG...............................171.000.00------------------------------------------------------------------------------1.00----
...................................................................AATGGGGGAGCTGGGATTGGG.........................................................................................2111.001.00-1.00---------------------------------------------------------------------------------
...........................................................................................................ACCCTGTCTGCGCCCCTCATT.................................................211.000.001.00----------------------------------------------------------------------------------
...........................................................................AGCTGGGATTGGGCGTGGAG..................................................................................2011.001.00-1.00---------------------------------------------------------------------------------
....................................................................ATGGGGGAGCTGGGATTGGGCG.......................................................................................2211.001.00-----------------------------------------1.00-----------------------------------------
.....................................................................TGGGGGAGCTGGGATTGGGCGTTT....................................................................................2411.001.00---------1.00-------------------------------------------------------------------------
..................................................GTGAGCTCCGGTCTTGGAATGGGGG......................................................................................................2511.001.00--------------------------------------------------1.00--------------------------------
.........................................................................................................TCACCCTGTCTGCGCCCCTCATAG................................................2411.001.00-------------------1.00---------------------------------------------------------------
....................................................................ATGGGGGAGCTGGGATTGGGT........................................................................................2111.005.00-----------------------1.00-----------------------------------------------------------
....................................................................ATGGGGGAGCTGGGATTGGGTGT......................................................................................2311.005.00----------1.00------------------------------------------------------------------------
.........................................................................................................TCACCCTGTCTGCGCCCCCCAG..................................................221.000.00-----------------------------------1.00-----------------------------------------------
........................................................................GGGAGCTGGGATTGGGCGTGG....................................................................................2111.001.00---------------------------------1.00-------------------------------------------------
...................................................................AATGGGGGAGCTGGGATTGGT.........................................................................................2111.002.00----1.00------------------------------------------------------------------------------
....................................................................ATGGGGGAGCTGGGATTGGGCGTTT....................................................................................2511.0016.00-----------------------------------1.00-----------------------------------------------
.........................................................................................................TCACCCTGTCTGCGCCCCTCAGC.................................................2311.001.001.00----------------------------------------------------------------------------------
..........................................................................................................CACCCTGTCTGCGCCCCTCAGAAA...............................................2411.005.00---------1.00-------------------------------------------------------------------------
...................................................................AATGGGGGAGCTGGGATTGT..........................................................................................2011.001.00---------------------------------------------------------1.00-------------------------
....................................................................ATGGGGGAGCTGGGATTGGTAT.......................................................................................2211.006.00-----1.00-----------------------------------------------------------------------------
............................................................................GCTGGGATTGGGCGTGGA...................................................................................1811.001.00--------------------------------------------------1.00--------------------------------
..........................................................................................................CACCCTGTCTGCGCCCCTCAGC.................................................2211.001.001.00----------------------------------------------------------------------------------
.........................................................................................................................................TGCGGGAGATCCTGGAATGGC...................211.000.00-------------------------------1.00---------------------------------------------------
...........................................................................................................ACCCTGTCTGCGCCCCTCAGAAT...............................................231.000.00-------------------------------------------------1.00---------------------------------
.........................................................................................................TCACCCTGTCTGCGCCCCTCAGTT................................................2411.0011.001.00----------------------------------------------------------------------------------
.......................................................................................................................................GCTGCGGGAGATCCTGGAACGGCGG.................2511.001.00------------------------------------------------------------1.00----------------------
.....................................................................TGGGGGAGCTGGGATTGGGAAA......................................................................................2211.003.00-1.00---------------------------------------------------------------------------------
...................................................................AATGGGGGAGCTGGGATTGGGCGAA.....................................................................................251.000.00-1.00---------------------------------------------------------------------------------
.....................................................................................GGGCGTGGAGCTTGGAGGCCTCA.....................................................................2311.001.00----------------1.00------------------------------------------------------------------
....................................................................................TGGGCGTGGAGCTTGTA............................................................................171.000.00-------------------------1.00---------------------------------------------------------
..................ACGGGGAGCGTGGGCC...............................................................................................................................................161.000.00------------------------------------------1.00----------------------------------------
.....................................................................TGGGGGAGCTGGGATTGGGCGTGG....................................................................................2411.001.00-------------------------------------1.00---------------------------------------------
...................................ATCACGGAGGAGGAGCAG............................................................................................................................181.000.00-----------------1.00-----------------------------------------------------------------
.....................................................................TGGGGGAGCTGGGATTGG..........................................................................................1811.001.00-1.00---------------------------------------------------------------------------------
......................................................................GGGGGAGCTGGGATTGGGCGTGG....................................................................................2311.001.00------------------1.00----------------------------------------------------------------
......................................................................GGGGGAGCTGGGATTGGGCGT......................................................................................2111.001.00------------------1.00----------------------------------------------------------------
.........................................................................................................TCACCCTGTCTGCGCCCCTCAGTTA...............................................2511.0011.00--------------1.00--------------------------------------------------------------------
..........................................................................................................................................GCGGGAGATCCTGGAACGGCG..................2111.001.00---------------------------------------1.00-------------------------------------------
.....................................................................TGGGGGAGCTGGGATTGGGCGT......................................................................................2211.001.00-----1.00-----------------------------------------------------------------------------
....................................................................ATGGGGGAGCTGGGATTGGAAG.......................................................................................2211.006.00-1.00---------------------------------------------------------------------------------
.....................................................................................GGGCGTGGAGCTTGGCA...........................................................................171.000.00-------------------------1.00---------------------------------------------------------
.....................................................................TGGGGGAGCTGGGATTGGA.........................................................................................1911.001.00-------------------1.00---------------------------------------------------------------
..................................................GTGAGCTCCGGTCTTGGAATGGGGGAGCTGGGATT............................................................................................3511.001.00--------------1.00--------------------------------------------------------------------
...................................................................AATGGGGGAGCTGGGATTGGGCGTGT....................................................................................261.000.00----1.00------------------------------------------------------------------------------
.......................................CGGAGGAGGAGGTGACTGG.......................................................................................................................191.000.00------------------------------------------1.00----------------------------------------
........CTGGGGCGTCACGGGGAGCGTGGG.................................................................................................................................................2411.001.00-----------1.00-----------------------------------------------------------------------
...................................................................AATGGGGGAGCTGGGATTGGGCGAT.....................................................................................251.000.00-1.00---------------------------------------------------------------------------------
..................................................................................................................................CTGCAGCTGCGGGAGGT..............................171.000.00----------------------------------------------------1.00------------------------------
....................................................................ATGGGGGAGCTGGGATTGGTCGT......................................................................................2311.006.00-1.00---------------------------------------------------------------------------------
....................................................................ATGGGGGAGCTGGGATTGGGCGCGT....................................................................................2511.001.00-1.00---------------------------------------------------------------------------------
..................................................GTGAGCTCCGGTCTTGGAATGGGGGAGCTGGGATTGGGCGTGGAGCTTGGAGGCCTCACCCTGTCTGCGCCCCTCAG..................................................7711.001.00------------1.00----------------------------------------------------------------------
......................................ACGGAGGAGGAGGTGAGC.........................................................................................................................1811.001.00-------------------------------------------1.00---------------------------------------
..................................................GTGAGCTCCGGTCTTGGAATGGGG.......................................................................................................2411.001.00---------------------------------------------------------------------------1.00-------
..................................................GTGAGCTCCGGTCTTGGAATGGGGGAGCTGGGATTGGGCGTGGAGCTTGGAGGCCTCACCCTGTCTGCGCCCCTCAGA.................................................7811.001.00------------1.00----------------------------------------------------------------------
...................................................................AATGGGGGAGCTGGGATTGGGCGA......................................................................................241.000.00-1.00---------------------------------------------------------------------------------
................................CGCATCACGGAGGAGGAT...............................................................................................................................181.000.00---------------1.00-------------------------------------------------------------------
..........................................................................................................CACCCTGTCTGCGCCCCTCCGT.................................................221.000.00----------------------------------------------------------1.00------------------------
..................................................GTGAGCTCCGGTCTTGGA.............................................................................................................1811.001.00-------------------------1.00---------------------------------------------------------
.........................................................................................................TCACCCTGTCTGCGCCCCTCAA..................................................2211.001.001.00----------------------------------------------------------------------------------
.........................................................................................................................................TGCGGGAGATCCTGGAACAGTT..................221.000.00-------------------------------1.00---------------------------------------------------
....................................................................ATGGGGGAGCTGGGATTGGGCGTAT....................................................................................2511.0016.00-------------1.00---------------------------------------------------------------------
.........................................................................................................TCACCCTGTCTGCGCCCCTCAGTTT...............................................2511.0011.001.00----------------------------------------------------------------------------------
....................................................................ATGGGGGAGCTGGGATTGGGGGT......................................................................................2311.005.00-------------------------------------------------1.00---------------------------------
.........................................................................................................TCACCCTGTCTGCGCCCCTCATT.................................................2311.001.00----------1.00------------------------------------------------------------------------
.......................................................................GGGGAGCTGGGATTGGGCGTGT....................................................................................221.000.00-1.00---------------------------------------------------------------------------------
....................................................................ATGGGGGAGCTGGGATTGGGCGTGTT...................................................................................2611.004.00----------1.00------------------------------------------------------------------------
...................................................................AATGGGGGAGCTGGGATT............................................................................................1811.001.00--------------------------------------------------------------------------1.00--------
....................................................................ATGGGGGAGCTGGGATTGGGCGTAAA...................................................................................2611.0016.00-1.00---------------------------------------------------------------------------------
..........................................................................................................CACCCTGTCTGCGCCCCTCAGTT................................................2311.005.00--------------1.00--------------------------------------------------------------------
....................................................................ATGGGGGAGCTGGGATTGGGCGTTTA...................................................................................2611.0016.00--1.00--------------------------------------------------------------------------------
.........................................................................................................TCACCCTGTCTGCGCCCCTCATTT................................................2411.001.001.00----------------------------------------------------------------------------------
........................AGCGTGGGCGCATCACGGAGGAGGAG...............................................................................................................................2611.001.001.00----------------------------------------------------------------------------------
....................................................................ATGGGGGAGCTGGGATTGGGCGTGTTT..................................................................................2711.004.00----------------1.00------------------------------------------------------------------
.........................................................................................................TCACCCTGTCTGCGCCCCTCAAT.................................................2311.001.001.00----------------------------------------------------------------------------------
...................................................................AATGGGGGAGCTGGGATTGAA.........................................................................................2111.001.00-------------------------------------------1.00---------------------------------------
............................................................................GCTGGGATTGGGCGT......................................................................................1520.500.50-------------------------------------------------------------------------------0.50---
...........................................................................................................................................................GGCGGGGATCCGGG........1450.200.20-------------------------0.20---------------------------------------------------------
..CTGGAGCTGGGGCGT................................................................................................................................................................1560.170.17----------------------------------0.17------------------------------------------------
............................................................................GCTGGGATTGGGCG.......................................................................................1470.140.14---------------------------------------------------------------------------------0.14-
......................................ACGGAGGAGGAGGTG............................................................................................................................1590.110.11----------------------------------------------------------------------------------0.11

Antisense strand
TCCTGGAGCTGGGGCGTCACGGGGAGCGTGGGCGCATCACGGAGGAGGAGGTGAGCTCCGGTCTTGGAATGGGGGAGCTGGGATTGGGCGTGGAGCTTGGAGGCCTCACCCTGTCTGCGCCCCTCAGCAGCTGCAGCTGCGGGAGATCCTGGAACGGCGGGGATCCGGGGAACTGTA
.....................................................................((((((.((..(((.((((.(((..(((....)))..))))))))))..))))))))...................................................
...............................................................64.............................................................127................................................
SizePerfect hitTotal NormPerfect NormSRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR042455(GSM539847)
mouse plasma cells [09-002]. (blood)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR525244(SRA056111/SRX170320)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR042446(GSM539838)
mouse mature B cells (spleen) replicate 1 [09-002]. (b cell)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		GSM640582(GSM640582)
small RNA in the liver with paternal control . (liver)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR206939(GSM723280)
other. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		mjLiverWT3()
Liver Data. (liver)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		GSM510452(GSM510452)
newborn_rep8. (total RNA)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)		SRR116846(GSM678422)
Small RNA deep sequencing from mouse epididym. (epididymis)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR037904(GSM510440)
brain_rep1. (brain)		SRR060845(GSM561991)
total RNA. (brain)		SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR037902(GSM510438)
testes_rep3. (testes)		SRR206940(GSM723281)
other. (brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		mjTestesWT2()
Testes Data. (testes)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR059768(GSM562830)
Treg_control. (spleen)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR525238(SRA056111/SRX170314)
Second IgG control. (Blood)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)
................................................................................................................................AGCTGCAGCTGCGGGAC................................ 171.000.00---------------------------------------------------------------1.00-------------------
.................................................................................................................TCTGCGCCCCTCAGCAGG.............................................. 181.000.00-----------------------------------------------------------------------1.00-----------
..............CGTCACGGGGAGCGTGGGC................................................................................................................................................ 1920.500.50--------------------------------------------------------------------------------0.50--