ID: mmu-mir-7011
GENE: Sema4a(4)
chr3:88244751-88245000-


(1)
AGO.mut 		(2)
AGO1.ip 		(10)
AGO2.ip 		(1)
AGO3.ip 		(4)
B-CELL 		(19)
BRAIN 		(1)
CELL-LINE 		(2)
DGCR8.mut 		(3)
EMBRYO 		(8)
ESC 		(1)
FIBROBLAST 		(1)
KIDNEY 		(9)
LIVER 		(5)
LYMPH 		(12)
OTHER 		(5)
OTHER.mut 		(1)
PIWI.ip 		(5)
SKIN 		(9)
SPLEEN 		(7)
TESTES 		(1)
THYMUS 		(1)
TOTAL-RNA 		(1)
UTERUS

Sense strand
GTTCCGCCCCGCCCCGCCCCGCCCCGCCCCGCCCCGCGCTGGGTATTTTTCATGAATTAGGCATTTTCAACCTCACAGAGAGCCTAGGAGCTCTGGGTCTGAGTGTTCTCACCATCTGAGGAAAGAGGGCAGAGGAGGATGGGAGAGGGAGGTGTGCACCCACTCAGGAGCTGACACACTCTGCTTCCCTCCTCCTCTAGTGCTCCATGGGCCCCTCCTCTGACAAAGCCTTGACCTTCATGAAGGACCA
..................................................................................................................................(((((((((.(((((..((((((((((.((......)).))..)))).))))..))))))))))))))....................................................
...............................................................................................................................128.....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		mjTestesWT4()
Testes Data. (testes)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR206941(GSM723282)
other. (brain)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		mjLiverWT3()
Liver Data. (liver)		SRR065049(SRR065049)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346415(SRX098256)
source: Testis. (Testes)		mjTestesWT3()
Testes Data. (testes)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR073954(GSM629280)
total RNA. (blood)		SRR525243(SRA056111/SRX170319)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR065046(SRR065046)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR206942(GSM723283)
other. (brain)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR525242(SRA056111/SRX170318)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR059771(GSM562833)
CD4_control. (spleen)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR065053(SRR065053)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR037904(GSM510440)
brain_rep1. (brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR306544(GSM750587)
19-24nt. (ago2 brain)
...................................................................................................................................................................................TCTGCTTCCCTCCTCCTCTAGT.................................................22114.0014.00-----4.00-3.00--1.00-1.00--2.00------1.00-1.00-----1.00--------------------------------------------------------
....................................................................................................................................AGGAGGATGGGAGAGGGAGGTGT...............................................................................................23112.0012.003.00-------1.002.00----2.00-----1.00----------------2.00-1.00-----------------------------------------------
.................................................................................................................................CAGAGGAGGATGGGAGAGGGAG...................................................................................................2218.008.005.00---1.00-------------1.00--------------------------------------------------------1.00-----------
...................................................................................................................................................................................TCTGCTTCCCTCCTCCTCTAGA.................................................2218.006.00---------2.00-1.00----1.00-------------1.00-----------------1.00--1.00---------1.00-------------------------
..................................................................................................................TCTGAGGAAAGAGGGCAGAGGAGG................................................................................................................2417.007.00--6.00------------------------------------------------------------1.00-----------------------
.................................................................................................................................CAGAGGAGGATGGGAGAGGGAGGTG................................................................................................2516.006.002.00-----2.00-----------1.00------------1.00-------------------------------------------------------
...................................................................................................................................................................................TCTGCTTCCCTCCTCCTCTAG..................................................2116.006.00----------2.00--1.00------------------2.00-----1.00------------------------------------------------
.................................................................................................................................CAGAGGAGGATGGGAGAGGGAGGTGT...............................................................................................2615.005.001.00-----2.00-----------1.00-------1.00------------------------------------------------------------
...........................................................................................................CTCACCATCTGAGGAAAGAG...........................................................................................................................2014.004.00---4.00-----------------------------------------------------------------------------------
.................................................................................................................................CAGAGGAGGATGGGAGAGGGA....................................................................................................2114.004.00----1.00--1.00-----------------------------------------------1.00-------------1.00-----------------
.................................................................................................................................CAGAGGAGGATGGGAGAGG......................................................................................................1913.003.00-------------------3.00-------------------------------------------------------------------
.................................................................................................................................CAGAGGAGGATGGGAGAGGGAGGT.................................................................................................2413.003.001.00--------------------------1.00-------1.00---------------------------------------------------
...............................................................................................................................................................................ACACTCTGCTTCCCTCCTCCTCT....................................................2313.003.00---------------------------1.00----------1.00-----------------1.00------------------------------
.................................................................................................................................CAGAGGAGGATGGGAGAGGGAGGTTA...............................................................................................2612.003.00---------1.00----------------------------------------------------1.00------------------------
................................................................................................................................................................................CACTCTGCTTCCCTCCTCCTCT....................................................2212.002.001.00-------------------------1.00------------------------------------------------------------
.................................................................................................................................CAGAGGAGGATGGGAGAG.......................................................................................................1812.002.001.00-----------------------------------------------------------------1.00--------------------
...............................................................................................................................................................................ACACTCTGCTTCCCTCCTCCTCC....................................................2312.001.00------------1.00------------------------------------1.00-------------------------------------
..................................................................................................................................................................CTCAGGAGCTGACACACTCTGC..................................................................2212.002.00----------------2.00----------------------------------------------------------------------
...............................................................................................................................................................................ACACTCTGCTTCCCTCCTCCTCA....................................................2312.001.00-------------1.00---------------------------------1.00---------------------------------------
.................................................................................................TCTGAGTGTTCTCACCATCTGAGG.................................................................................................................................2412.002.00---2.00-----------------------------------------------------------------------------------
.............................................................................................................................AGGGCAGAGGAGGATGGG...........................................................................................................1812.002.00-----------------------1.00--------------------------------------------------1.00------------
.................................................................................................................................CAGAGGAGGATGGGAGAGGGAGTT.................................................................................................2412.008.00----1.00------------1.00---------------------------------------------------------------------
.................................................................................................................................CAGAGGAGGATGGGAGAGGGAAT..................................................................................................2312.004.00-1.00---------------1.00---------------------------------------------------------------------
..................................................................................................................................................................................CTCTGCTTCCCTCCTCCTCTAGA.................................................2312.001.00------------1.00-------------------------------1.00------------------------------------------
.................................................................................................................................CAGAGGAGGATGGGAGAGGGATT..................................................................................................2312.004.00-1.00---------------1.00---------------------------------------------------------------------
.......................................................................................GAGCTCTGGGTCTGAGTG.................................................................................................................................................1821.501.50-------------------------------------------------------------------------1.00----0.50--------
..................................................................................................................................................................................CTCTGCTTCCCTCCTCCTCTAG..................................................2211.001.00----------1.00----------------------------------------------------------------------------
.............................................................................................TGGGTCTGAGTGTTCTCAC..........................................................................................................................................1911.001.00---------------------1.00-----------------------------------------------------------------
...................................................................................................................................GAGGAGGATGGGAGAGGGAG...................................................................................................2011.001.00--------1.00------------------------------------------------------------------------------
....................................................................................................................................AGGAGGATGGGAGAGGGAG...................................................................................................1921.001.00----------------------0.50---------------------------------------------------------0.50------
.................................................................................................................................CAGAGGAGGATGGGAGAGGGAGGTGTTT.............................................................................................2811.005.00------------1.00--------------------------------------------------------------------------
.TTCCGCCCCGCCCCGCCCTC.....................................................................................................................................................................................................................................201.000.00--------------------------------------------------------------------1.00------------------
.................................................................................................................................CAGAGGAGGATGGGAGAGGGAAAA.................................................................................................2411.004.00--------------------1.00------------------------------------------------------------------
....................................................................................................................................AGGAGGATGGGAGAGGGCTAG.................................................................................................211.000.00-----------------------------------------1.00---------------------------------------------
...............................................................................................................................................................................ACACTCTGCTTCCCTCCTCCTCAG...................................................2411.001.00-1.00-------------------------------------------------------------------------------------
...................................................................................................................................GAGGAGGATGGGAGAGGGAGGTG................................................................................................2311.001.00----1.00----------------------------------------------------------------------------------
...........................................................................................................CTCACCATCTGAGGAAAGAGGG.........................................................................................................................2211.001.00--------------------------------------------------1.00------------------------------------
..........................................................................................................................................................TGCACCCACTCAGGAGCTGA............................................................................2011.001.00---------------1.00-----------------------------------------------------------------------
..........................................................................................................................................................................................................................TCTGACAAAGCCTTGACCTTCATGAAGGACC.3111.001.00-----------1.00---------------------------------------------------------------------------
.................................................................................................................................CAGAGGAGGATGGGAGAGGGAT...................................................................................................2211.004.00--------1.00------------------------------------------------------------------------------
....................................................................................................................................AGGAGGATGGGAGAGGGCG...................................................................................................191.000.00----------------------1.00----------------------------------------------------------------
.................................................................................................................................................................................ACTCTGCTTCCCTCCTCCTCT....................................................2111.001.00---------------------------------------------------------1.00-----------------------------
.................................................................................................................................CAGAGGAGGATGGGAGAGTAA....................................................................................................2111.002.00----------------------------------------------------------1.00----------------------------
...................................................................................................................................................................................TCTGCTTCCCTCCTCCTCTAGC.................................................2211.006.00---------------------------------------1.00-----------------------------------------------
................................................................................................................................GCAGAGGAGGATGGGAGAGGGAGGTG................................................................................................2611.001.00------1.00--------------------------------------------------------------------------------
............................................................................................................................................................................................................................TGACAAAGCCTTGACCTTCATGAAGGA...2711.001.00---------------------------------1.00-----------------------------------------------------
...............................................................................................................................................................................ACACTCTGCTTCCCTCCTCCTCTTTT.................................................2611.003.00-----------1.00---------------------------------------------------------------------------
...............................................................................................................................................................................ACACTCTGCTTCCCTCCTCCTAATA..................................................251.000.001.00--------------------------------------------------------------------------------------
.................................................................................................................................CAGAGGAGGATGGGAGAGGGTAT..................................................................................................2311.001.00----1.00----------------------------------------------------------------------------------
.................................................................................................................................CAGAGGAGGATGGGAGAGGG.....................................................................................................2011.001.001.00--------------------------------------------------------------------------------------
.................................................................................................................................CAGAGGAGGATGGGAGAGGGAGGGGT...............................................................................................2611.001.00-1.00-------------------------------------------------------------------------------------
.................................................................................................................................CAGAGGAGGATGGGAGAGGTAA...................................................................................................2211.003.001.00--------------------------------------------------------------------------------------
.................................................................................................................................CAGAGGAGGATGGGAGAGGGAGAA.................................................................................................2411.008.00--------------------1.00------------------------------------------------------------------
..................................................................................................................................AGAGGAGGATGGGAGAGGGAG...................................................................................................2111.001.00----1.00----------------------------------------------------------------------------------
.................................................................................................................................CAGAGGAGGATGGGAGAGGGATA..................................................................................................2311.004.00-------------------------------1.00-------------------------------------------------------
.................................................................................................................................CAGAGGAGGATGGGAGAGT......................................................................................................1911.002.00--------------1.00------------------------------------------------------------------------
...............................................................................................................................GGCAGAGGAGGATGGTGCG........................................................................................................191.000.00----------------------------------1.00----------------------------------------------------
................................CCCGCGCTGGGTATTT..........................................................................................................................................................................................................1611.001.00------------------------------------------------------------------------1.00--------------
...........................................................................................................................AGAGGGCAGAGGAGGATG.............................................................................................................1841.001.00-----------------------1.00---------------------------------------------------------------
...............................................................................................................................................................................ACACTCTGCTTCCCTCCTAA.......................................................201.000.00-------------------------------------------1.00-------------------------------------------
..........................................................................................................................................................TGCACCCACTCAGGAGCTGACACAC.......................................................................2511.001.00----------------------------------------------------------------------1.00----------------
....................................................................................................................................................................................CTGCTTCCCTCCTCCTCTAGAT................................................221.000.00-------------1.00-------------------------------------------------------------------------
..........................................................................................................................................................TGCACCCACTCAGGAGCTGACAC.........................................................................2311.001.00----------------------------------------------------------------------------1.00----------
..................................................................................................................................................................................CTCTGCTTCCCTCCTCCTCTAGT.................................................2311.001.00-------1.00-------------------------------------------------------------------------------
...............................................................................................................................................................................ACACTCTGCTTCCCTCCTCCTTTT...................................................241.000.00-----------1.00---------------------------------------------------------------------------
....................................................................................................................................AGGAGGATGGGAGAGGGAGGTGAAAA............................................................................................2611.001.00----1.00----------------------------------------------------------------------------------
.................................................................................................................................CAGAGGAGGATGGGAGAGGAA....................................................................................................2111.003.00-----------------------------1.00---------------------------------------------------------
......................................................................................................................................GAGGATGGGAGAGGGAGGTG................................................................................................2011.001.00----------------------------1.00----------------------------------------------------------
.................................................................................................................ATCTGAGGAAAGAGGGCA.......................................................................................................................1811.001.00----------------------------------------1.00----------------------------------------------
.....................................................................................AGGAGCTCTGGGTCTGAG...................................................................................................................................................1811.001.00---------------------------------------------1.00-----------------------------------------
.................................................................................................................................CAGAGGAGGATGGGAGAGGGAAA..................................................................................................2311.004.00-----------------------------1.00---------------------------------------------------------
..........................................................................................................................................................................................................................TCTGACAAAGCCTTGACC..............1811.001.00----------------------------------------------------1.00----------------------------------
....................................................................................................................................AGGAGGATGGGAGAGGGAGGTTTT..............................................................................................241.000.00-----------------------------------------------------------1.00---------------------------
..................................................................................................................TCTGAGGAAAGAGGGCAGAGGCGG................................................................................................................241.000.00--1.00------------------------------------------------------------------------------------
.................................................................................................................................CAGAGGAGGATGGGAGAGGGAGG..................................................................................................2311.001.001.00--------------------------------------------------------------------------------------
........................................................................................................................................................................................TTCCCTCCTCCTCTAGT.................................................1711.001.00-----1.00---------------------------------------------------------------------------------
...............................................................................................................................................................................ACACTCTGCTTCCCTCCTCCTCTAGA.................................................261.000.00-----------------------------------------------------------------1.00---------------------
....................................................................................................................................AGGAGGATGGGAGAGGGAGGTG................................................................................................2211.001.001.00--------------------------------------------------------------------------------------
....................................................................................................................................AGGAGGATGGGAGAGGGAGGTGTAG.............................................................................................2511.0012.00-1.00-------------------------------------------------------------------------------------
.................................................................................................................................CAGAGGAGGATGGGAGAAAA.....................................................................................................201.000.00-1.00-------------------------------------------------------------------------------------
...............................................................................................................................................................................................................TGGGCCCCTCCTCTGACA.........................1811.001.00----------------------------------------------1.00----------------------------------------
.................................................................................................................................CAGAGGAGGATGGGAGTTAT.....................................................................................................201.000.00-----------------------------------1.00---------------------------------------------------
..................................................................................................................................AGAGGAGGATGGGAGAGGGAGGAAAT..............................................................................................261.000.00--------1.00------------------------------------------------------------------------------
.................................................................................................................................CAGAGGAGGATGGGAGAGGGAGAAAA...............................................................................................2611.008.001.00--------------------------------------------------------------------------------------
...........................................................................................................................................................GCACCCACTCAGGAGCTG.............................................................................1811.001.00---------------------------------1.00-----------------------------------------------------
..................................................................................................................................AGAGGAGGATGGGAGAGGGAGGTGTTT.............................................................................................271.000.001.00--------------------------------------------------------------------------------------
...............................................................................................................................................................................ACACTCTGCTTCCCTCCTCCTC.....................................................2211.001.00-------------1.00-------------------------------------------------------------------------
...............................................................................................................................................................................ACACTCTGCTTCCCTCCTCCTCTAA..................................................251.000.00--------1.00------------------------------------------------------------------------------
........................................................................................................GTTCTCACCATCTGAGGAAAGAGGG.........................................................................................................................2511.001.00----------------------------------------1.00----------------------------------------------
.................................................................................................................................CAGAGGAGGATGGGAGAGGGAGTAT................................................................................................2511.008.001.00--------------------------------------------------------------------------------------
.................................................................................................................................CAGAGGAGGATGGGAGAGGGAGGTACT..............................................................................................2711.003.00------1.00--------------------------------------------------------------------------------
.................................................................................................................................CAGAGGAGGATGGGAGAGGGAGGAT................................................................................................2511.001.00-1.00-------------------------------------------------------------------------------------
..................................................................................................................................AGAGGAGGATGGGAGAGGGAGGTGTTTT............................................................................................281.000.001.00--------------------------------------------------------------------------------------
.................................................................................................................................CAGAGGAGGATGGGAGAGGGAGGTTTT..............................................................................................2711.003.00----------------------------1.00----------------------------------------------------------
..........................................................................................................................................................TGCACCCACTCAGGAGCTGACACT........................................................................2411.001.00-----1.00---------------------------------------------------------------------------------
.................................................................................................................................CAGAGGAGGATGGGAGAGGGAGGTGTT..............................................................................................2711.005.00-1.00-------------------------------------------------------------------------------------
..................................................................................................................................AGAGGAGGATGGGAGAGGG.....................................................................................................1920.500.50-----------------------------------------0.50---------------------------------------------
..........................................................................................CTCTGGGTCTGAGTGTTC..............................................................................................................................................1820.500.50---------------------------------------------------------------------------------0.50-----
.................................................................................GCCTAGGAGCTCTGGGT........................................................................................................................................................1740.500.50------------------------------------------0.25-----------------------------------------0.25--
.................................................TCATGAATTAGGCATTTT.......................................................................................................................................................................................1820.500.50-------------------------------------------------------------------------------0.50-------
.......................................................................................................................................AGGATGGGAGAGGGAGGTG................................................................................................1920.500.50---------------------0.50-----------------------------------------------------------------
....................................................................................................................................AGGAGGATGGGAGAGGGAGG..................................................................................................2020.500.500.50--------------------------------------------------------------------------------------
................................................................................AGCCTAGGAGCTCTGG..........................................................................................................................................................1630.330.33----------------------------------------------------------------------------------0.33----
....................................................................................................................................AGGAGGATGGGAGAGGGA....................................................................................................1830.330.330.33--------------------------------------------------------------------------------------
................................................................................AGCCTAGGAGCTCTGGG.........................................................................................................................................................1730.330.33-----------------------------------------------------------------------------------0.33---
.....................................................................................................................GAGGAAAGAGGGCAGAG....................................................................................................................1790.220.22-----------------------0.22---------------------------------------------------------------
.....................................................................................................................................GGAGGATGGGAGAGGGAG...................................................................................................1860.170.17-------------------------------------------------------------------------------------0.17-
.....................................................................................................................................................................................................................CCTCCTCTGACAAAGC.....................1680.120.12------------------------0.12--------------------------------------------------------------

Antisense strand
GTTCCGCCCCGCCCCGCCCCGCCCCGCCCCGCCCCGCGCTGGGTATTTTTCATGAATTAGGCATTTTCAACCTCACAGAGAGCCTAGGAGCTCTGGGTCTGAGTGTTCTCACCATCTGAGGAAAGAGGGCAGAGGAGGATGGGAGAGGGAGGTGTGCACCCACTCAGGAGCTGACACACTCTGCTTCCCTCCTCCTCTAGTGCTCCATGGGCCCCTCCTCTGACAAAGCCTTGACCTTCATGAAGGACCA
..................................................................................................................................(((((((((.(((((..((((((((((.((......)).))..)))).))))..))))))))))))))....................................................
...............................................................................................................................128.....................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)		SRR042461(GSM539853)
mouse dendritic cells [09-002]. (bone marrow)		mjTestesWT4()
Testes Data. (testes)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR206941(GSM723282)
other. (brain)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		mjLiverWT3()
Liver Data. (liver)		SRR065049(SRR065049)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR346415(SRX098256)
source: Testis. (Testes)		mjTestesWT3()
Testes Data. (testes)		Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)		SRR042462(GSM539854)
mouse macrophages [09-002]. (bone marrow)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		mjLiverKO1()
Liver Data. (Zcchc11 liver)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)		SRR073954(GSM629280)
total RNA. (blood)		SRR525243(SRA056111/SRX170319)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR346414(SRX098255)
Global profiling of miRNA and the hairpin pre. (Spleen)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR065046(SRR065046)
Tissue-specific Regulation of Mouse MicroRNA . (liver)		SRR206942(GSM723283)
other. (brain)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		GSM510450(GSM510450)
newborn_rep6. (total RNA)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		SRR525242(SRA056111/SRX170318)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)		mjTestesKO5()
Testes Data. (Zcchc11 testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		SRR059771(GSM562833)
CD4_control. (spleen)		SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR065053(SRR065053)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR037904(GSM510440)
brain_rep1. (brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR059772(GSM562834)
CD4_Drosha. (spleen)		SRR306544(GSM750587)
19-24nt. (ago2 brain)
...................................................................................................................................GAGGAGGATGGGAGAGCCA.................................................................................................... 193.000.00------------------------------------2.00-----1.00--------------------------------------------
........................................................................................AGCTCTGGGTCTGAGTGTTCTCACCATCTGA................................................................................................................................... 3112.002.00-------------------------2.00-------------------------------------------------------------
.......................................................................................GAGCTCTGGGTCTGAGAAG................................................................................................................................................ 191.000.00-----------------------------------------------------------------------1.00---------------
.................................................................................GCCTAGGAGCTCTGGGTCTGAGTGT................................................................................................................................................ 2511.001.00---1.00-----------------------------------------------------------------------------------
.......................CCGCCCCGCCCCGCGCTT................................................................................................................................................................................................................. 181.000.00------------------------1.00--------------------------------------------------------------
......................................................................................................................................................................................................................CTCCTCTGACAAAGCCCCA................. 191.000.00------------------------------------------------------1.00--------------------------------
..TCCGCCCCGCCCCGCCTGTT.................................................................................................................................................................................................................................... 201.000.00----------------------------------1.00----------------------------------------------------
..TCCGCCCCGCCCCGCT........................................................................................................................................................................................................................................ 161.000.00------------------------------------------------------------1.00--------------------------
......................................................................CCTCACAGAGAGCCTAGGA................................................................................................................................................................. 1911.001.00---------------------1.00-----------------------------------------------------------------
..........................................................................................................................................................................................CCCTCCTCCTCTAGTGCTCC............................................ 2011.001.00-----------------------------------------------------1.00---------------------------------
.................................................................................................................................................................................................................GGCCCCTCCTCTGACTTCT...................... 191.000.00----------------------------------------------------------------1.00----------------------
.............................................................................................................CACCATCTGAGGAAAGTGAT......................................................................................................................... 201.000.00-----------------------------------------------------------------------------1.00---------
..............................................................................................................................................................................................................ATGGGCCCCTCCTCTGACAA........................ 2011.001.00-------------------------------------------------------------------1.00-------------------
.TTCCGCCCCGCCCCGC......................................................................................................................................................................................................................................... 1660.170.17--------------------------------------------------------------------------------------0.17