ID: mmu-mir-7004
GENE: Atp9a(4)
chr2:168466146-168466395-


(2)
AGO1.ip 		(18)
AGO2.ip 		(2)
AGO3.ip 		(39)
BRAIN 		(1)
CELL-LINE 		(1)
DCR.mut 		(2)
DGCR8.mut 		(3)
EMBRYO 		(5)
ESC 		(1)
HEART 		(2)
LIVER 		(1)
LUNG 		(1)
LYMPH 		(4)
OTHER 		(6)
OTHER.mut 		(2)
PANCREAS 		(5)
SKIN 		(1)
SPLEEN 		(8)
TESTES 		(2)
TOTAL-RNA 		(1)
UTERUS

Sense strand
CTTCTGACTTGTCACAGCTGAGCTATGTGCTCTTGGACCAGCCTCTGACCCTCTCTGGGTCTCCATCATGGAGATGATGGAATAGTTCAGACTCCCTAGGGTGTTGAGGGCCACAGGAATCCCTGTAATAGACACATGACCTTCCGTGGATGAGGCCTGTGCCGTGACTCTCAGTGACACCCACTCCCTCCTTCACGCAGGCTGTCTTCTCGTCTGTGTTCTACTTTGCATCCGTTCCTCTCTACCAAGG
................................................................................................................................................((((((.((((...(((..((.((.....)).))...)))..)))).)))))).....................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormAgo1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		SRR306528(GSM750571)
19-24nt. (ago2 brain)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR206940(GSM723281)
other. (brain)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR095853(SRX039174)
sequencing of miRNA from wild type and diseas. (heart)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR306538(GSM750581)
19-24nt. (ago2 brain)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR206941(GSM723282)
other. (brain)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR014231(GSM319955)
16.5 dpc total. (testes)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR206942(GSM723283)
other. (brain)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR037907(GSM510443)
brain_rep4. (brain)		GSM361394(GSM361394)
CGNP_P6_wt_rep1. (brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		GSM361399(GSM361399)
CGNP_P6_p53--_Ink4c--_rep2. (brain)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR077865(GSM637802)
18-30 nt small RNAs. (liver)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		GSM361408(GSM361408)
WholeCerebellum_P6_wt_rep1. (brain)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR037906(GSM510442)
brain_rep3. (brain)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)
...................................................................................................................................................................................CCCACTCCCTCCTTCACGCAGT.................................................221109.0041.0025.0012.002.004.004.006.007.001.003.008.007.002.004.00------2.003.00--2.001.001.00--2.001.001.00--2.00--1.00-1.00-------1.001.00----------1.00---1.001.00------1.001.00----
...................................................................................................................................................................................CCCACTCCCTCCTTCACGCAG..................................................21141.0041.001.005.005.006.005.002.002.001.001.00----2.00-----1.00--1.00-------1.00----1.001.00--1.00---------1.00----1.00-----1.00-------1.00----1.00--
.............................................................................................................................................TTCCGTGGATGAGGCCTGTGCCGT.....................................................................................24112.0012.00-1.001.00----3.00------1.00-------1.00----1.00--------------------1.00---1.00----1.00---------1.00--------
..............................................................................................................................................TCCGTGGATGAGGCCTGTGCCGT.....................................................................................23111.0011.00--3.00----1.002.00---1.00--1.00-----1.00-----1.00---------------------------1.00--------------------
...................................................................................................................................................................................CCCACTCCCTCCTTCACGCAGA.................................................2218.0041.00-1.001.002.00---2.00------------------------------1.00--1.00----------------------------------
.............................................................................................................................................TTCCGTGGATGAGGCCTGTGCCGTG....................................................................................2516.006.00-------1.00---4.00-----------------------1.00----------------------------------------
..............................................................................................................................................TCCGTGGATGAGGCCTGTGCCG......................................................................................2215.005.00--1.00-1.001.00-------1.00--1.00-----------------------------------------------------------
...................................................................................................................................................................................CCCACTCCCTCCTTCACGCAT..................................................2115.003.00---1.00--------------4.00---------------------------------------------------------
.............................................................................................................................................TTCCGTGGATGAGGCCTGTGC........................................................................................2114.004.00--1.00----------1.00-------1.00-------------------------------------1.00----------------
..............................................................................................................................................TCCGTGGATGAGGCCTGTGC........................................................................................2013.003.00---------------2.00--------------------------------------------------------1.00---
...................................................................................................................................................................................CCCACTCCCTCCTTCACGCA...................................................2013.003.001.00-----------1.00---------------------------------------------------1.00-----------
..............................................................................................................................................TCCGTGGATGAGGCCTGTGCCGTGT...................................................................................252.000.00--1.00-----------1.00-------------------------------------------------------------
..............................................................................................................................................TCCGTGGATGAGGCCTGTGCCGTT....................................................................................2412.0011.00-------------------------------2.00--------------------------------------------
...........................................................................................................................................................CCTGTGCCGTGACTCGGA.............................................................................182.000.00--------------------------------------------------1.00----------1.00--------------
..............................................................................................................................................TCCGTGGATGAGGCCTGTGCAAA.....................................................................................2312.003.00--------------------------------2.00-------------------------------------------
...................................................................................................................................................................................CCCACTCCCTCCTTCACGCCGT.................................................2212.001.00---1.00-1.00----------------------------------------------------------------------
................................................................................................................................................CGTGGATGAGGCCTGTGCCGTG....................................................................................2211.001.00-------------1.00--------------------------------------------------------------
................................................................................................................................................................................................................CTCGTCTGTGTTCTACTTTGCATCC.................2511.001.00------------------------------------------1.00---------------------------------
.............................................................................................................................................TTCCGTGGATGAGGCCTGTGCCGTT....................................................................................2511.0012.00--1.00-------------------------------------------------------------------------
.............................................................................................................................................TTCCGTGGATGAGGCCTGTGCC.......................................................................................2211.001.00-----------------------1.00----------------------------------------------------
...................................................................................................................................................................................CCCACTCCCTCCTTCACGCTT..................................................2111.001.00-----------------------------1.00----------------------------------------------
...................................................................................................................................................................................CCCACTCCCTCCTTCACGCATT.................................................2211.003.00---1.00------------------------------------------------------------------------
...................................................................................................................................................................................CCCACTCCCTCCTTCACGC....................................................1911.001.00-------------------------1.00--------------------------------------------------
..................................................................................................................................................................................................ACGCAGGCTGTCTTCTTC......................................181.000.00-----------------------------------------------------------------1.00----------
.............................................................................................................................................TTCCGTGGATGAGGCCTGTGCCG......................................................................................2311.001.00----1.00-----------------------------------------------------------------------
..............................................................................................................................................TCCGTGGATGAGGCCTGTGCCGG.....................................................................................2311.005.00-------------------------1.00--------------------------------------------------
.............................................................................................................................................TTCCGTGGATGAGGCCTGTA.........................................................................................201.000.00----1.00-----------------------------------------------------------------------
............................................................................................................................................CTTCCGTGGATGAGGCCTGTGCCGTG....................................................................................2611.001.00--1.00-------------------------------------------------------------------------
..............................................................................................................................................TCCGTGGATGAGGCCTGTGCCGTTT...................................................................................2511.0011.00----1.00-----------------------------------------------------------------------
...............................................................................................................................................................................................................TCTCGTCTGTGTTCTACTTTGCATCC.................2611.001.00----------------------------------1.00-----------------------------------------
.........................................................................................................................................................................................................CTGTCTTCTCGTCTGTGTTCTAC..........................2311.001.00------------------------1.00---------------------------------------------------
..........................................................................................................................................................................................................TGTCTTCTCGTCTGTGT...............................1711.001.00--------1.00-------------------------------------------------------------------
................................................................................................................................................CGTGGATGAGGCCTGTGC........................................................................................1811.001.00----------------------1.00-----------------------------------------------------
.............................................................................................................................................TTCCGTGGATGAGGCCTGTGCCGTTT...................................................................................2611.0012.00---------------------1.00------------------------------------------------------
............................................................................................................................................CTTCCGTGGATGAGGCCTGTA.........................................................................................211.000.00-----------------------------------------------------1.00----------------------
............................................................................................................................................CTTCCGTGGATGAGGCCTGTGCCGT.....................................................................................2511.001.00--------------------------1.00-------------------------------------------------
...................................................................................................................................................................................CCCACTCCCTCCTTCACGCAAT.................................................2211.003.00----------1.00-----------------------------------------------------------------
.......................................................................................................................................................................................................GGCTGTCTTCTCGTCTGTG................................1911.001.00----1.00-----------------------------------------------------------------------
..............................................................................................................................................TCCGTGGATGAGGCCTGTG.........................................................................................1911.001.00--------1.00-------------------------------------------------------------------
..............................................................................................................................................TCCGTGGATGAGGCCTGTGCCGTAAT..................................................................................2611.0011.00----------------1.00-----------------------------------------------------------
......................................................................................................................................................................................................AGGCTGTCTTCTCGTCTGT.................................1911.001.00----------------------------------------1.00-----------------------------------
.............................................................................................................................................TTCCGTGGATGAGGCCTGTGCCGTTTAT.................................................................................2811.0012.00----------------1.00-----------------------------------------------------------
...............................................................................................................................................................................................................................CTTTGCATCCGTTCCTCTCTACCAAG.2611.001.00----1.00-----------------------------------------------------------------------
....................................................................................................................................................................................CCACTCCCTCCTTCACGCAGT.................................................211.000.001.00---------------------------------------------------------------------------
.............................................................................................................................................TTCCGTGGATGAGGCCTGTGCCGTGT...................................................................................2611.006.00----------------------------------1.00-----------------------------------------
.............................................................................................................................................TTCCGTGGATGAGGCCTGTGCCA......................................................................................2311.001.00----------------1.00-----------------------------------------------------------
..............................................................................................................................................................................................................TTCTCGTCTGTGTTCTACTTTG......................2211.001.00------------------------1.00---------------------------------------------------
...................................................................ATGGAGATGATGGAACCT.....................................................................................................................................................................181.000.00---------------1.00------------------------------------------------------------
..............................................................................................................................................................................................................................ACTTTGCATCCGTTCCTCTCT.......2111.001.00--------------1.00-------------------------------------------------------------
.........................................................................................................................................................................................CCCTCCTTCACGCAG..................................................1530.330.33--------------0.33-------------------------------------------------------------
.........................................................................................................................................................................................CCCTCCTTCACGCAGA.................................................1630.330.33--------------------------------------------------------------------------0.33-
..TCTGACTTGTCACAGC........................................................................................................................................................................................................................................1660.170.17---------------------------------------------------------------------------0.17

Antisense strand
CTTCTGACTTGTCACAGCTGAGCTATGTGCTCTTGGACCAGCCTCTGACCCTCTCTGGGTCTCCATCATGGAGATGATGGAATAGTTCAGACTCCCTAGGGTGTTGAGGGCCACAGGAATCCCTGTAATAGACACATGACCTTCCGTGGATGAGGCCTGTGCCGTGACTCTCAGTGACACCCACTCCCTCCTTCACGCAGGCTGTCTTCTCGTCTGTGTTCTACTTTGCATCCGTTCCTCTCTACCAAGG
................................................................................................................................................((((((.((((...(((..((.((.....)).))...)))..)))).)))))).....................................................
........................................................................................................................................137............................................................200................................................
SizePerfect hitTotal NormPerfect NormAgo1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		SRR306528(GSM750571)
19-24nt. (ago2 brain)		mjTestesKO8()
Testes Data. (Zcchc11 testes)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR206940(GSM723281)
other. (brain)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		Ago2IP504(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR095853(SRX039174)
sequencing of miRNA from wild type and diseas. (heart)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR306538(GSM750581)
19-24nt. (ago2 brain)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR206941(GSM723282)
other. (brain)		SRR059769(GSM562831)
Treg_Drosha. (spleen)		SRR014231(GSM319955)
16.5 dpc total. (testes)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR206942(GSM723283)
other. (brain)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR037907(GSM510443)
brain_rep4. (brain)		GSM361394(GSM361394)
CGNP_P6_wt_rep1. (brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		GSM361399(GSM361399)
CGNP_P6_p53--_Ink4c--_rep2. (brain)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR077865(GSM637802)
18-30 nt small RNAs. (liver)		SRR037912(GSM510449)
newborn_rep5. (total RNA)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		GSM361408(GSM361408)
WholeCerebellum_P6_wt_rep1. (brain)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR029039(GSM433291)
25dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR037906(GSM510442)
brain_rep3. (brain)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)
........................................GCCTCTGACCCTCTCAGGG............................................................................................................................................................................................... 194.000.00-----------------4.00----------------------------------------------------------
......................................CAGCCTCTGACCCTCTGA.................................................................................................................................................................................................. 182.000.00-------------------------------------2.00--------------------------------------
.............................................................................................................................................TTCCGTGGATGAGGCCTGTGC........................................................................................ 2111.001.00------------------------------------------------------------------1.00---------
..........................................................................................................................................................................................CCTCCTTCACGCAGGCAATC............................................ 201.000.00-------------------------------------------1.00--------------------------------
.............................................................................................................................................................................................................CTTCTCGTCTGTGTTCAC........................... 181.000.00---------------------------------------------------1.00------------------------
..........................................................................................................................................................................................CCTCCTTCACGCAGGCA............................................... 171.000.00---------------------------------------------------------------------1.00------
..............................................................................................................................................................GTGCCGTGACTCTCATA........................................................................... 171.000.00--------------------------------------------1.00-------------------------------
...........TCACAGCTGAGCTATGA.............................................................................................................................................................................................................................. 171.000.00--------------------------------------------------------1.00-------------------
........................................GCCTCTGACCCTCTCTGAGG.............................................................................................................................................................................................. 201.000.00--------------------------1.00-------------------------------------------------
..............................................................................................................................................................GTGCCGTGACTCTCACA........................................................................... 171.000.00---------------------------------------------1.00------------------------------
...................GAGCTATGTGCTCTTTCGT.................................................................................................................................................................................................................... 191.000.00--------------1.00-------------------------------------------------------------