ID: mmu-mir-7000
GENE: Mapk8ip1(4)
chr2:92227491-92227760-


(1)
AGO.mut 		(3)
AGO1.ip 		(13)
AGO2.ip 		(2)
AGO3.ip 		(39)
BRAIN 		(4)
CELL-LINE 		(2)
DCR.mut 		(2)
DGCR8.mut 		(9)
EMBRYO 		(4)
ESC 		(3)
FIBROBLAST 		(1)
KIDNEY 		(3)
LIVER 		(1)
LUNG 		(7)
OTHER 		(4)
OTHER.mut 		(1)
PANCREAS 		(5)
PIWI.ip 		(3)
PIWI.mut 		(4)
SKIN 		(1)
SPLEEN 		(22)
TESTES 		(1)
TOTAL-RNA 		(1)
UTERUS

Sense strand
GCACAGTTGGCAGGACCGTGTGTCTCGATCATCCTCCCCTCTGAAGACAGGTAAGTCAGGCCTCTCTCCCCAAGCTGGAGACCCAGCAGTCTTCACCTGGCTCACCTGGGCTGAGGTCATCTGGAAGCCAGTGGCTGGCTGCAGAGGACAGTTGGGAAGAGGAGGGGACAGGTATCTGGACAGAGGTTCTGCCCTCAGCACCCACCTGCCTGTCCTCCAGGAGAACAGACGCCTCCACATGAACACATCTGCCTGAGTGATGAGCTGCCA
...................................................................................................................................................................(((((((((((..(((...((((......)))).....)))..))))))))).))....................................................
.............................................................................................................................................................158...........................................................220................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR206941(GSM723282)
other. (brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR206942(GSM723283)
other. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR206940(GSM723281)
other. (brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		mjTestesWT3()
Testes Data. (testes)		SRR014236(GSM319960)
10 dpp total. (testes)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		SRR037901(GSM510437)
testes_rep2. (testes)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR037936(GSM510474)
293cand1. (cell line)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR206939(GSM723280)
other. (brain)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		mjTestesWT1()
Testes Data. (testes)		SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR042481(GSM539873)
mouse pancreatic tissue [09-002]. (pancreas)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR073955(GSM629281)
total RNA. (blood)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		GSM317183(GSM317183)
Ago-1 IP small RNAs from mouse brain. (ago1 brain)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR037935(GSM510473)
293cand3. (cell line)		SRR037907(GSM510443)
brain_rep4. (brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR394083(GSM855969)
background strain: C57BL6/SV129cell type: KRa. (cell line)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
..................................................................................................................................................................AGGGGACAGGTATCTGGACAGA......................................................................................22158.0058.0013.005.002.005.001.001.001.005.00---2.003.00-4.00---1.00----2.00-1.001.00---1.00---1.00-------1.00-----1.00--1.00--------------------1.00-1.00----1.00-----------1.00--1.00---1.00--
......................................................................................................................................................................................................CACCCACCTGCCTGTCCTCCAGT.................................................23131.007.001.00-5.00--2.00--7.00-3.001.00----3.002.00-1.00---------1.00--------------1.00--------------1.00-------------1.00-------1.00--------1.00----------
..............................................................................................................................................................................................................TGCCTGTCCTCCAGGAGCTCA...........................................2126.000.0010.00--------6.00---------1.00-----------------1.00-----1.00----------1.00---1.00-1.00-1.00------1.00-------------------1.00------1.00----
......................................................................................................................................................................................................CACCCACCTGCCTGTCCTCC....................................................20115.0015.00-3.004.00--2.00-----1.00---1.00-1.00-1.00----------------2.00----------------------------------------------------------------
..............................................................................................................................................................................................................TGCCTGTCCTCCAGGAGCTC............................................2014.000.007.00--------1.00------------1.00----------1.00----1.00----------1.00-----------1.00--------------------------------------1.00
...............................................................................................................................................................................................................................................TGAACACATCTGCCTGAGTGATGAGCTG...28110.0010.00------1.00------2.00----------1.00---2.00----------1.00-----1.00------------------------------1.00-1.00----------------------
..................................................................................................................................................................AGGGGACAGGTATCTGGACAGAGG....................................................................................2419.009.005.00----1.00-------------------------2.00---------------------------------------------1.00-----------------------
......................................................................................................................................................................................................CACCCACCTGCCTGTCCTCCA...................................................2118.008.00--1.00--2.00-1.00-------1.00-------------1.00----------1.00----------------------------------------------1.00-------------
..................................................................................................................................................................AGGGGACAGGTATCTGGACAGT......................................................................................2218.007.003.001.00-2.00--------1.00-----------------------------------1.00----------------------------------------------------
......................................................................................................................................................................................................CACCCACCTGCCTGTCCTCCAG..................................................2217.007.00-1.001.00---1.00---1.00----1.00----------------------------------------------------------------1.00----------------1.00---
..................................................................................................................................................................AGGGGACAGGTATCTGGACAG.......................................................................................2117.007.001.001.00--1.00--------------------------1.00------------------1.00----------------1.00-----------------1.00---------------
......................................................................................................................................................................................................CACCCACCTGCCTGTCCTC.....................................................1916.006.00--1.00-----------------4.00-------------------1.00------------------------------------------------------------
......................................................................................................................................................................................................CACCCACCTGCCTGTCCTCCAGA.................................................2315.007.00----1.00----------------4.00-------------------------------------------------------------------------------
..................................................................................................................................................................AGGGGACAGGTATCTGGACAGAGGTTCT................................................................................2814.004.00-1.00-----1.00---------------------1.00-----------------------1.00-----------------------------------------------
......................................................................................................................................................................................................CACCCACCTGCCTGTCCTCCAT..................................................2213.008.00---------------1.00--------------1.00-------------1.00--------------------------------------------------------
..............................................................................................................................................................................................................................................ATGAACACATCTGCCTGAGTGATGAGCT....2812.002.00----2.00------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................GCCTGTCCTCCAGGAGCTC............................................192.000.00----------------------------------------------2.00------------------------------------------------------
...........................................................................................................................................TGCAGAGGACAGTTGGGAAGAGCAGT.........................................................................................................262.000.00------------------------2.00----------------------------------------------------------------------------
..............................................................................................................................................................................................................TGCCTGTCCTCCAGGAGCTT............................................202.000.002.00----------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................TGCCTGTCCTCCAGGAGCT.............................................192.000.001.00----------------------------------------------------------------------------------1.00-----------------
......................................................................................................................................................................................................CACCCACCTGCCTGTCCTCTTA..................................................2212.006.00-2.00---------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................ACCCACCTGCCTGTCCTCCAG..................................................2112.002.00-----------1.00-------1.00---------------------------------------------------------------------------------
...............................................................................................................................................................AGGAGGGGACAGGTATCTGGACAG.......................................................................................2412.002.00-----------------------------------1.00----------------------------------------------------1.00------------
................................................................................................................................................................................................................CCTGTCCTCCAGGAGATC............................................182.000.00------------------------------1.00------------------------1.00---------------------------------------------
................................................................................................................................................................GGAGGGGACAGGTATCTGGAC.........................................................................................2112.002.00---1.00----------------------------------1.00--------------------------------------------------------------
.......................................................................................................................................................................................................ACCCACCTGCCTGTCCTCCAGT.................................................2212.002.00-----------------1.00--------------------------------------------------------------------------1.00--------
....................................................................................................................................GGCTGGCTGCAGAGGA..........................................................................................................................16101.801.80--------------------------------1.80--------------------------------------------------------------------
.......................................................................................................................................................................................................ACCCACCTGCCTGTCCTCCAGAA................................................2311.002.001.00----------------------------------------------------------------------------------------------------
.......................................................................................................................TCTGGAAGCCAGTGGCTGGCTGCAGAGGACAGTTGGGAAGAGGAGGGGACAGGTATCTGGACA........................................................................................6311.001.00-----------------------------------------------1.00-----------------------------------------------------
..ACAGTTGGCAGGACCGTGTGTC......................................................................................................................................................................................................................................................2211.001.00-------------------------1.00---------------------------------------------------------------------------
.....................................................................................................................................................................................................................................CGCCTCCACATGAACACATCTGCCTGAGT............2911.001.00-----------1.00-----------------------------------------------------------------------------------------
.......................................................................................................................................................................................................ACCCACCTGCCTGTCCTCCATT.................................................221.000.00-----------------------------------------------------------------------1.00-----------------------------
.....................................CCTCTGAAGACAGGTAAGTCA....................................................................................................................................................................................................................2111.001.00---------------------------------------------------------------------------1.00-------------------------
..............................................................................................................................................................................................................TGCCTGTCCTCCAGGAGCACA...........................................211.000.00-------------------------------------1.00---------------------------------------------------------------
............................................................................................................GGCTGAGGTCATCTGGAATAGT............................................................................................................................................221.000.00--1.00--------------------------------------------------------------------------------------------------
.....GTTGGCAGGACCGTGTG........................................................................................................................................................................................................................................................1711.001.00-------1.00---------------------------------------------------------------------------------------------
..................................................................................................................................................................AGGGGACAGGTATCTGGACAGATT....................................................................................2411.0058.001.00----------------------------------------------------------------------------------------------------
...................................................................................................................................................................GGGGACAGGTATCTGGACAGAT.....................................................................................221.000.00-----------------------------------1.00-----------------------------------------------------------------
......................................................................................................................................................................................................................................................ATCTGCCTGAGTGATGAGCT....2011.001.00----------------------------------1.00------------------------------------------------------------------
..............................................................................................................................................................................................................TGCCTGTCCTCCAGGACCTC............................................201.000.00--------------------------------------------------------1.00--------------------------------------------
..................................................................................................................................................................AGGGGACAGGTATCTGGACAGAAA....................................................................................2411.0058.00-1.00---------------------------------------------------------------------------------------------------
...................................CCCCTCTGAAGACAGTGT.........................................................................................................................................................................................................................181.000.00-----------------------------------------1.00-----------------------------------------------------------
.....GTTGGCAGGACCGTGTGTCTCGATCATC.............................................................................................................................................................................................................................................2811.001.00----1.00------------------------------------------------------------------------------------------------
..........................................................................................................................................................................GGTATCTGGACAGAGGTTCTGCCCTC..........................................................................2611.001.00------------1.00----------------------------------------------------------------------------------------
..................................................................................................................................................................AGGGGACAGGTATCTGGACAA.......................................................................................2111.001.00-------------------------1.00---------------------------------------------------------------------------
............................................................................................................GGCTGAGGTCATCTGGAACAGT............................................................................................................................................221.000.00---------------------------------------------------------------------------------------------------1.00-
................................................................................................................................................................GGAGGGGACAGGTATCTGGACAG.......................................................................................2311.001.001.00----------------------------------------------------------------------------------------------------
................................................................................................................................................................GGAGGGGACAGGTATCTGGACAGT......................................................................................2411.001.00---1.00-------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................TGCCTGTCCTCCAGGGTCG.............................................191.000.00-----------------------------------------1.00-----------------------------------------------------------
..................................................................................................................................................................AGGGGACAGGTATCTGGACAGAA.....................................................................................2311.0058.00-1.00---------------------------------------------------------------------------------------------------
..................................................................................................................................................................AGGGGACAGGTATCTGGAC.........................................................................................1911.001.00--------------------------1.00--------------------------------------------------------------------------
...................................................................................................................................................................................................................................................CACATCTGCCTGAGTGATGAGC.....2211.001.00------1.00----------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................ACCCACCTGCCTGTCCTCCAGA.................................................2211.002.00----------1.00------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................TGCCTGTCCTCCAGGAGCTAA...........................................211.000.00-------------------------------------------------1.00---------------------------------------------------
................................................................................................................................................................GGAGGGGACAGGTATCTGGACGA.......................................................................................2311.002.00----------1.00------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................TGCCTGTCCTCCAGGAGCTCT...........................................211.000.00-------------------------------------------1.00---------------------------------------------------------
..............................................................................................................................................................................................................TGCCTGTCCTCCAGGAAAT.............................................191.000.00-----------------------------------------------------------------------------------------------1.00-----
............................TCATCCTCCCCTCTGAAGACAG............................................................................................................................................................................................................................2211.001.00------------------------------------------1.00----------------------------------------------------------
........................TCGATCATCCTCCCCTCTGAAGACAGG...........................................................................................................................................................................................................................2711.001.00------1.00----------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................GAACAGACGCCTCCACA...............................1711.001.00----1.00------------------------------------------------------------------------------------------------
.....GTTGGCAGGACCGTGTGTCTCGATC................................................................................................................................................................................................................................................2511.001.00------1.00----------------------------------------------------------------------------------------------
.......................CTCGATCATCCTCCCCTCTGAAGACA.............................................................................................................................................................................................................................2611.001.00---------------1.00-------------------------------------------------------------------------------------
.............................................................................................................................................CAGAGGACAGTTGGGAAGAGGAGGGGACAGGTATCTGGACAGAGGTTCTGCCCTCAGCACCCACCTGCCTGTCCTCCAGTTT...............................................821.000.00-----------------------------------------------1.00-----------------------------------------------------
...............................................................................................................................................................................................................................................TGAACACATCTGCCTGAGTGATGAGCTGC..2911.001.00---------------------------------------1.00-------------------------------------------------------------
................................................................................................................................................................................................................CCTGTCCTCCAGGAGATCT...........................................191.000.00---------------------------------1.00-------------------------------------------------------------------
....AGTTGGCAGGACCGTGTGTCTCGATC................................................................................................................................................................................................................................................2611.001.00--------------------------1.00--------------------------------------------------------------------------
..................................................................................................................................................................AGGGGACAGGTATCTGGACAGAGTTT..................................................................................261.000.00---1.00-------------------------------------------------------------------------------------------------
............................................................................................................................AAGCCAGTGGCTGGCTGCAGAGGACAGT......................................................................................................................2811.001.00------------------------------------------------------------------1.00----------------------------------
......................TCTCGATCATCCTCCCCTCTGAAGACAGG...........................................................................................................................................................................................................................2911.001.00----------------------------1.00------------------------------------------------------------------------
........GGCAGGACCGTGTGTCTCGA..................................................................................................................................................................................................................................................2011.001.00------------------1.00----------------------------------------------------------------------------------
...........................................................................................................................................TGCAGAGGACAGTTGGGAAGAGCATA.........................................................................................................261.000.00---------------------------------------------1.00-------------------------------------------------------
............GGACCGTGTGTCTCGATC................................................................................................................................................................................................................................................1811.001.00--1.00--------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................CACCCACCTGCCTGTCCTCCATAT................................................2411.008.00----1.00------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................AGAACAGACGCCTCCACATGAACA.........................2411.001.00---------------------------------------------------------1.00-------------------------------------------
..........................................................................................................................................................................................................................AGGAGAACAGACGCCTCCACAT..............................2211.001.00------------------1.00----------------------------------------------------------------------------------
......................................................................................................................................CTGGCTGCAGAGGACG........................................................................................................................161.000.00---------------------------1.00-------------------------------------------------------------------------
...............................................................................................................................................................................................................................................TGAACACATCTGCCTGAGTGATGAGC.....2611.001.00----------------------------------------------------1.00------------------------------------------------
..............................................................................................................................................................................................................TGCCTGTCCTCCAGGAGCTCG...........................................211.000.00---------------------------------------------------------------1.00-------------------------------------
........GGCAGGACCGTGTGTCTCG...................................................................................................................................................................................................................................................1911.001.00------------------1.00----------------------------------------------------------------------------------
......................................................................................................................................................................................................CACCCACCTGCCTGTCCTCCAA..................................................2211.008.00----------------------------------------------------------------1.00------------------------------------
................................CCTCCCCTCTGAAGACAG............................................................................................................................................................................................................................1811.001.00-----------------------------------------------------------------1.00-----------------------------------
.............................................................................................................................................................................................................................................CATGAACACATCTGCCTGAGTGATGAGC.....2811.001.00----1.00------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................CACCCACCTGCCTGTCCTCCAAA.................................................2311.008.00------1.00----------------------------------------------------------------------------------------------
..................................TCCCCTCTGAAGACAGT...........................................................................................................................................................................................................................171.000.00----------------------1.00------------------------------------------------------------------------------
..................................................................................................................................................................AGGGGACAGGTATCTGGACA........................................................................................2011.001.00------------1.00----------------------------------------------------------------------------------------
...................................CCCCTCTGAAGACAGTGTC........................................................................................................................................................................................................................191.000.00----------------------1.00------------------------------------------------------------------------------
........................TCGATCATCCTCCCCTCTGAAGACAGGA..........................................................................................................................................................................................................................2811.001.00------1.00----------------------------------------------------------------------------------------------
...................................CCCCTCTGAAGACAGT...........................................................................................................................................................................................................................161.000.00---------------------------1.00-------------------------------------------------------------------------
.........................................................................................................................................................................................................................CAGGAGAACAGACGCCTCCACA...............................2211.001.00------------------------------------------------------------------------------------1.00----------------
..ACAGTTGGCAGGACCGTG..........................................................................................................................................................................................................................................................1811.001.00--------------1.00--------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................CACATGAACACATCTGCCTGAGTGATG........2711.001.00----------------------------------------------------------------------1.00------------------------------
.......................................................................................................................................TGGCTGCAGAGGACAGTTGGGAAGA..............................................................................................................2511.001.00-------------1.00---------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................................ATGAACACATCTGCCTGAGTGATGAGC.....2711.001.00---------------------------------------------------------------------------------------------1.00-------
.......................................................................................................................................................................................................ACCCACCTGCCTGTCCTCCAGTA................................................2311.002.00-----1.00-----------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................TGCCTGTCCTCCAGGCGCT.............................................191.000.00-----------------------1.00-----------------------------------------------------------------------------
...............................................................................................................................................................................................................................................TGAACACATCTGCCTGAGTGATGAGCT....2711.001.00-------------1.00---------------------------------------------------------------------------------------
.....................................................................................................................................................................................................GCACCCACCTGCCTGTCCTCCAG..................................................2311.001.00----------------1.00------------------------------------------------------------------------------------
.....................................................................................................................................GCTGGCTGCAGAGGACCG.......................................................................................................................181.000.00--------------------------------1.00--------------------------------------------------------------------
...........................................................................................................................................................................................................................................CACATGAACACATCTGCCT................1911.001.00--------------------------------------------------------------------1.00--------------------------------
............................................................................................................................................................................................................................................ACATGAACACATCTGCCTGAGTG...........2311.001.00----------------------------------------------------------------------------------1.00------------------
...........................................................................................................................................TGCAGAGGACAGTTGGGAAGAGCAGA.........................................................................................................261.000.00-------------1.00---------------------------------------------------------------------------------------
...................GTGTCTCGATCATCCTCCCCTCTGAAGAC..............................................................................................................................................................................................................................2911.001.00----1.00------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................GAACACATCTGCCTGAGTG...........1930.670.67---------------------------------0.67-------------------------------------------------------------------
................................................................................................................................................................................................................................................GAACACATCTGCCTGAGT............1840.500.50------0.50----------------------------------------------------------------------------------------------
................................................................................................................................CAGTGGCTGGCTGCAGA.............................................................................................................................1740.250.25---0.25-------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................................AACACATCTGCCTGAGT............1740.250.25--------------------------------------------------0.25--------------------------------------------------
....................................................................................................................................GGCTGGCTGCAGAGGATGC.......................................................................................................................19100.101.80--------------------------------0.10--------------------------------------------------------------------

Antisense strand
GCACAGTTGGCAGGACCGTGTGTCTCGATCATCCTCCCCTCTGAAGACAGGTAAGTCAGGCCTCTCTCCCCAAGCTGGAGACCCAGCAGTCTTCACCTGGCTCACCTGGGCTGAGGTCATCTGGAAGCCAGTGGCTGGCTGCAGAGGACAGTTGGGAAGAGGAGGGGACAGGTATCTGGACAGAGGTTCTGCCCTCAGCACCCACCTGCCTGTCCTCCAGGAGAACAGACGCCTCCACATGAACACATCTGCCTGAGTGATGAGCTGCCA
...................................................................................................................................................................(((((((((((..(((...((((......)))).....)))..))))))))).))....................................................
.............................................................................................................................................................158...........................................................220................................................
SizePerfect hitTotal NormPerfect NormSRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR206941(GSM723282)
other. (brain)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR206942(GSM723283)
other. (brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		Ago3IP805(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR345203(SRX097264)
source: size fractionated RNA from mouse hipp. (brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)		SRR390300(GSM849858)
cell line: NIH-3T3cell type: fibroblastinfect. (ago2 fibroblast)		SRR390299(GSM849857)
cell line: NIH-3T3cell type: fibroblastip ant. (ago2 fibroblast)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR206940(GSM723281)
other. (brain)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR306539(GSM750582)
19-24nt. (ago2 brain)		SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR037929(GSM510467)
e7p5_rep3. (embryo)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		mjTestesWT3()
Testes Data. (testes)		SRR014236(GSM319960)
10 dpp total. (testes)		GSM509275(GSM509275)
MitoPLD+/+ E16.5 small RNA. (testes)		SRR037901(GSM510437)
testes_rep2. (testes)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR037928(GSM510466)
e7p5_rep2. (embryo)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR037936(GSM510474)
293cand1. (cell line)		SRR037905(GSM510441)
brain_rep2. (brain)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR206939(GSM723280)
other. (brain)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		GSM509278(GSM509278)
small RNA cloning by length. (piwi testes)		SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR037906(GSM510442)
brain_rep3. (brain)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		mjTestesWT1()
Testes Data. (testes)		SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)		SRR037924(GSM510462)
e9p5_rep2. (embryo)		SRR038740(GSM527275)
small RNA-Seq. (dicer brain)		SRR042481(GSM539873)
mouse pancreatic tissue [09-002]. (pancreas)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR073955(GSM629281)
total RNA. (blood)		SRR306527(GSM750570)
19-24nt. (ago2 brain)		SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)		GSM317183(GSM317183)
Ago-1 IP small RNAs from mouse brain. (ago1 brain)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR037914(GSM510451)
newborn_rep7. (total RNA)		SRR037935(GSM510473)
293cand3. (cell line)		SRR037907(GSM510443)
brain_rep4. (brain)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR394083(GSM855969)
background strain: C57BL6/SV129cell type: KRa. (cell line)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
.............................CATCCTCCCCTCTGATTCT.............................................................................................................................................................................................................................. 191.000.00---------------------------1.00-------------------------------------------------------------------------
...........................................................................................................................................................................................................................GGAGAACAGACGCCTGGCT................................ 191.000.00----------------------1.00------------------------------------------------------------------------------
...............................................................................................................................CCAGTGGCTGGCTGCAAGC............................................................................................................................ 191.000.00--------------------------------------------------------------------------------------1.00--------------