ID: mmu-mir-6992
GENE: Stx5(3)
chr19:8817365-8817619+


(1)
AGO1.ip 		(1)
AGO2.ip 		(4)
B-CELL 		(6)
BRAIN 		(5)
CELL-LINE 		(3)
DCR.mut 		(1)
DGCR8.mut 		(13)
EMBRYO 		(12)
ESC 		(5)
FIBROBLAST 		(6)
LIVER 		(1)
LYMPH 		(11)
OTHER 		(5)
OTHER.mut 		(6)
PIWI.ip 		(3)
PIWI.mut 		(1)
SKIN 		(4)
SPLEEN 		(1)
TDRD1.ip 		(26)
TESTES 		(3)
THYMUS

Sense strand
CCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAGGTGAGTTGAGAGGGGCGTTGTGGTGGGGTGATACAGTGTCTTAAGTATATCTGCCTGTGATGGTTTGGCTGAGTGGAATTGGTTGTGTTGGAGGTTATGGTAACAGCCTCTTTCCTGCCCTTTACCACAACCTTCTCACTGATGATCATTTGCAGGCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAA
....................................................................................................((((..(((((.(((......(((((((..(((((((.((((((.((.((.............)))).)))))).)))))))))).))))))).)))))..))))..................................................
................................................................................................97..........................................................................................................205................................................
SizePerfect hitTotal NormPerfect NormSRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		mjTestesWT1()
Testes Data. (testes)		SRR073954(GSM629280)
total RNA. (blood)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		mjLiverWT1()
Liver Data. (liver)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		mjTestesWT3()
Testes Data. (testes)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR014229(GSM319953)
10 dpp MILI. (mili testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR059774(GSM562836)
MEF_control. (MEF)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR037926(GSM510464)
e9p5_rep4. (embryo)		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR059768(GSM562830)
Treg_control. (spleen)		GSM361408(GSM361408)
WholeCerebellum_P6_wt_rep1. (brain)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR073955(GSM629281)
total RNA. (blood)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR037923(GSM510461)
e9p5_rep1. (embryo)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)
.....................................................................................................TGCCTGTGATGGTTTGGCTGAGT...................................................................................................................................231410.00410.00102.0062.0087.0030.0023.0013.008.003.002.003.00-3.006.009.001.006.00-8.003.003.005.001.003.00--1.001.002.00--2.002.001.001.00-1.002.00----3.001.00---1.00----1.001.00-1.00-2.001.00--1.001.00--1.00---1.00-------1.00--------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTGAGTG..................................................................................................................................241102.00102.0038.0011.007.0011.004.004.004.00--2.003.00-2.001.00------1.00---2.00-1.001.00-2.00------------1.002.001.001.00---1.00-------------------------------------1.00------1.00--
......................................................................................................GCCTGTGATGGTTTGGCTGAGT...................................................................................................................................22178.0078.0013.0016.0012.002.008.004.003.00-2.001.003.00-2.001.00-------1.001.00-------1.002.00------1.00---1.00-1.00-----1.00---1.00-----------------------------1.00------------
.....................................................................................................TGCCTGTGATGGTTTGGCTGAGTGG.................................................................................................................................25165.0065.0017.0012.003.0012.001.00---2.002.001.001.00---1.00--4.00----4.00--1.00------1.00---2.00-------------------------------------------------------1.00---
......................................................................................................................................................................................................................................ACATTTGCCAAGCTGGAGAAGCT..23128.0028.00-------9.00---5.001.00-6.00------3.00---1.00------2.00-------------------------------------------------------1.00--------
......................................................................................................GCCTGTGATGGTTTGGCTGAGTG..................................................................................................................................23125.0025.0012.002.00-4.002.001.00----------------------------------------1.001.00-----2.00-------------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTGAGTGGA................................................................................................................................26119.0019.00--2.004.001.002.00--2.00-2.00-------------1.00-1.00-2.00-------------------2.00------------------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTGAGTGGAA...............................................................................................................................27115.0015.007.00-------5.00--------------------2.00---------------1.00---------------------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTGAG....................................................................................................................................22111.0011.00--5.00-1.00---2.00---1.00--------------------1.00---1.00-----------------------------------------------------------
.......................................................................................................................................................................................TCTCACTGATGATCATTTGCAG..................................................22110.0010.00-5.00----------------------------1.00-----1.00--------------1.00-----------------1.00-------------------------1.00-
......................................................................................................................................................................................TTCTCACTGATGATCATTTGCAG..................................................2319.009.00----------------9.00--------------------------------------------------------------------------------
........................................................................................................................................................................................CTCACTGATGATCATTTGCAG..................................................2118.008.00------5.00---------------1.00-----------1.00---------------------------1.00----------------------------------
......................................................................................................GCCTGTGATGGTTTGGCTGAGTGG.................................................................................................................................2418.008.001.002.00---4.00--------------------------------1.00----------------------------------------------------------
........................................................................................................................................................................................CTCACTGATGATCATTTGCAGA.................................................2217.008.006.00------------------------1.00-----------------------------------------------------------------------
..................................................GTGAGTTGAGAGGGGCGTTGTGGTG....................................................................................................................................................................................2516.006.00-------------------------------------------------1.00--------1.00-------1.00--------1.00-------1.00--1.00----------
......................................................................................................GCCTGTGATGGTTTGGCTGAGTGGA................................................................................................................................2515.005.00-1.00-1.00-2.00---1.00---------------------------------------------------------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTGCGT...................................................................................................................................235.000.004.00-----------------1.00------------------------------------------------------------------------------
.......................................................................................................................................................................................TCTCACTGATGATCATTTGC....................................................2014.004.004.00------------------------------------------------------------------------------------------------
........................................................................................................................................................................................CTCACTGATGATCATTTGCAGAA................................................2314.008.00-------------------2.00-----------------------------------------------1.00---------------------1.00-------
.......................................................................................................................................................................................TCTCACTGATGATCATTTGCAGA.................................................2314.0010.00-------2.00---1.00--------------------------------------------------------------------1.00----------------
..................................................GTGAGTTGAGAGGGGCGTTGTGGT.....................................................................................................................................................................................2413.003.00---------1.00-----------------1.00---------------------------------------------1.00-----------------------
................................................................................ATACAGTGTCTTAAGTATATCTGCCTGTGATGGTTTGGCTGAGTGGAATTGGTTGTGTTGGAGGTTATGGTAACAGCCTCTTTCCTGCCCTTTAC................................................................................9513.003.00---------------------------------------3.00---------------------------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTGAGC...................................................................................................................................2313.0011.001.00-------1.00-------------1.00--------------------------------------------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTGAGTGGAATT.............................................................................................................................2913.003.003.00------------------------------------------------------------------------------------------------
......................................................................................................GCCTGTGATGGTTTGGCTGAG....................................................................................................................................2113.003.00-2.00--------------------------------1.00--------------------------------------------------------------
.......................................................................................................................................TGTTGGAGGTTATGGTAACAGCC.................................................................................................2313.003.00-------3.00-----------------------------------------------------------------------------------------
..........................................................................................................................................................................................CACTGATGATCATTTGCAG..................................................1912.002.00------2.00------------------------------------------------------------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTGAGGGG.................................................................................................................................2512.0011.00-1.00--1.00--------------------------------------------------------------------------------------------
....................................................................................................CTGCCTGTGATGGTTTGGCTGAGTGGA................................................................................................................................2712.002.00------------------------2.00------------------------------------------------------------------------
.........................................................................................................TGTGATGGTTTGGCTGA.....................................................................................................................................1712.002.00---------------2.00---------------------------------------------------------------------------------
................................ATTTACCCTCATGGCCAG.............................................................................................................................................................................................................1812.002.00-------------------1.001.00----------------------------------------------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTTAGT...................................................................................................................................232.000.002.00------------------------------------------------------------------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTGAGCGG.................................................................................................................................2512.0011.00-2.00-----------------------------------------------------------------------------------------------
..................................................GTGAGTTGAGAGGGGCGTTGTGG......................................................................................................................................................................................2311.001.00---------1.00---------------------------------------------------------------------------------------
......................................................................................................GCCTGTGATGGTTTGGCTGAGG...................................................................................................................................2211.003.00----1.00--------------------------------------------------------------------------------------------
....................................ACCCTCATGGCCAGGCGCA........................................................................................................................................................................................................191.000.00---------------------1.00---------------------------------------------------------------------------
..................................................GTGAGTTGAGAGGGGCGTTGTGGA.....................................................................................................................................................................................2411.001.00---------1.00---------------------------------------------------------------------------------------
.................................................................................................................................TGGTTGTGTTGGAGGTTATGGTAT......................................................................................................241.000.00---------------------------------------------------------------------------------1.00---------------
.............................................................................................................................................................................................................GCGCATTGGGAAAGATCTCAGC............................2211.001.00--------------------------------------------------1.00----------------------------------------------
................................................................................................................GTTTGGCTGAGTGGAATTGGTTGTG......................................................................................................................2511.001.00----------1.00--------------------------------------------------------------------------------------
................................................................................................................................TTGGTTGTGTTGGAGGTTATGG.........................................................................................................2211.001.00-----------1.00-------------------------------------------------------------------------------------
................................................AGGTGAGTTGAGAGGGGCG............................................................................................................................................................................................1911.001.00-------------------------------------------------------------------------------------------1.00-----
......................................................................................................................................................................................................................................ACATTTGCCAAGCTGGAGAAGC...2211.001.00-------1.00-----------------------------------------------------------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTGAGG...................................................................................................................................2311.0011.00-1.00-----------------------------------------------------------------------------------------------
....................................................................................................CTGCCTGTGATGGTTTGGCTGAGTGG.................................................................................................................................2611.001.00-----1.00-------------------------------------------------------------------------------------------
......................................................................................................GCCTGTGATGGTTTGGCTGACTGG.................................................................................................................................241.000.00-1.00-----------------------------------------------------------------------------------------------
..................................................................................................................................................................................AACCTTCTCACTGATGATCATTTGCA...................................................2611.001.00-----------------------------------------------------------------------1.00-------------------------
......................................................................................................................................................................................TTCTCACTGATGATCATTTGCAGA.................................................2411.009.00----------------------------1.00--------------------------------------------------------------------
.......................................................TTGAGAGGGGCGTTGTGT......................................................................................................................................................................................181.000.00--------------------------------------------------------------------------1.00----------------------
...........................................................................................................................................................................................................AGGCGCATTGGGAAAGATCTCA..............................2211.001.00-------------------------------------------------------1.00-----------------------------------------
......................................................................................................GCCTGTGATGGTTTGGCTGCGT...................................................................................................................................221.000.001.00------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................ATTGGGAAAGATCTCAGCAAT.........................2111.001.00-----------------------------------1.00-------------------------------------------------------------
........................................................................................................................................................................................CTCACTGATGATCATTTGCAGAAA...............................................2411.008.00-------------------1.00-----------------------------------------------------------------------------
......................................................................................................GCCTGTGATGGTTTGGCTGAAT...................................................................................................................................221.000.00----------1.00--------------------------------------------------------------------------------------
....CTCTGCACGCAGCCCGA..........................................................................................................................................................................................................................................1711.001.00----------------------------1.00--------------------------------------------------------------------
................................................................GCGTTGTGGTGGGGTCC..............................................................................................................................................................................171.000.00-----------------------1.00-------------------------------------------------------------------------
..................................................GTGAGTTGAGAGGGGCGTTGTGGTGC...................................................................................................................................................................................2611.006.00-----------------------------------------------------------------------------1.00-------------------
......................................................................................................GCCTGTGATGGTTTGGCTGAGGGG.................................................................................................................................2411.003.00-----1.00-------------------------------------------------------------------------------------------
.....................................................................................................................GCTGAGTGGAATTGGTTGTGT.....................................................................................................................2111.001.00-----------------------------------1.00-------------------------------------------------------------
..................................................................................................................................GGTTGTGTTGGAGGTTATGGT........................................................................................................2111.001.00-------1.00-----------------------------------------------------------------------------------------
.........................................................................................................TGTGATGGTTTGGCTGAGT...................................................................................................................................1911.001.00--------------------------------------1.00----------------------------------------------------------
......................................................................................................GCCTGTGATGGTTTGGCTGAGAG..................................................................................................................................2311.003.00---1.00---------------------------------------------------------------------------------------------
...............GCCCGACAGTGCAGTCCCC.............................................................................................................................................................................................................................191.000.00-----------------1.00-------------------------------------------------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTGAGTGAA................................................................................................................................2611.00102.00----------1.00--------------------------------------------------------------------------------------
..........................CAGTGAATTTACCCTATGG..................................................................................................................................................................................................................191.000.00------------------------------------------------------------------------------------------1.00------
.....................................................................................................TGCCTGTGATGGTTTGGCTGAGTA..................................................................................................................................2411.00410.001.00------------------------------------------------------------------------------------------------
...................................................TGAGTTGAGAGGGGCGTTGTGG......................................................................................................................................................................................2211.001.00---------1.00---------------------------------------------------------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTGAAT...................................................................................................................................231.000.00--------------------1.00----------------------------------------------------------------------------
...........................................................................................................TGATGGTTTGGCTGAGTGGAATTGGT..........................................................................................................................2611.001.00---------1.00---------------------------------------------------------------------------------------
...............................................................................................................................ATTGGTTGTGTTGGAGGTTATGG.........................................................................................................2311.001.00--------------1.00----------------------------------------------------------------------------------
..............................................................................................................................AATTGGTTGTGTTGGAGGTTATG..........................................................................................................2311.001.00------------1.00------------------------------------------------------------------------------------
........................................................................................................................................................................................CTCACTGATGATCATTTGCAGTA................................................2311.008.00-------------------------------------------------------------------------------1.00-----------------
......................................................................................................GCCTGTGATGGTTTGGCTGAGTGGAA...............................................................................................................................2611.001.00-1.00-----------------------------------------------------------------------------------------------
..................................................GTGAGTTGAGAGGGGCGTTGTGGTAA...................................................................................................................................................................................2611.003.00-------------------------------------------------------------------------------------1.00-----------
.................................TTTACCCTCATGGCCAG.............................................................................................................................................................................................................1711.001.00--------------------------------1.00----------------------------------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTGAGGG..................................................................................................................................2411.0011.00-----1.00-------------------------------------------------------------------------------------------
...............................................................................................................GGTTTGGCTGAGTGGAATT.............................................................................................................................1911.001.00--------------1.00----------------------------------------------------------------------------------
..........................................................................................................GTGATGGTTTGGCTGAGTG..................................................................................................................................1911.001.00-----------------------------------------------1.00-------------------------------------------------
..........................................ATGGCCAGGTGAGTTGA....................................................................................................................................................................................................1711.001.00----------------------------------------------------1.00--------------------------------------------
..............................................................................................................................AATTGGTTGTGTTGGAGGTTATGG.........................................................................................................2411.001.00--------------1.00----------------------------------------------------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTGAGTGGAATG.............................................................................................................................291.000.00--------1.00----------------------------------------------------------------------------------------
................................................................................................................GTTTGGCTGAGTGGAATTGGTTGTGTTGGAG................................................................................................................3111.001.00----------1.00--------------------------------------------------------------------------------------
..............................................................................................................................AATTGGTTGTGTTGGTCGT..............................................................................................................191.000.00-----------1.00-------------------------------------------------------------------------------------
...........................................................................................................................................................................................................AGGCGCATTGGGAAAAGG..................................181.000.00-----------------------------------------------------------1.00-------------------------------------
..................................................................................................ATCTGCCTGTGATGGTTTGGCT.......................................................................................................................................2211.001.00---------------------1.00---------------------------------------------------------------------------
........................................................................................................................................................................................CTCACTGATGATCATTTGC....................................................1911.001.00------------------------------------------------------------------------1.00------------------------
......................................................................................................................................................................................................................GAAAGATCTCAGCAATACAT.....................2011.001.00----------------------------------------------------------------------1.00--------------------------
.......................................................................................................................................................................................TCTCACTGATGATCATTTGCAGAA................................................2411.0010.00-----------1.00-------------------------------------------------------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTCAGT...................................................................................................................................231.000.00-1.00-----------------------------------------------------------------------------------------------
......................................................................................................GCCTGTGATGGTTTGGCTGAGAGG.................................................................................................................................2411.003.00-1.00-----------------------------------------------------------------------------------------------
....................................................................................................................................................................................CCTTCTCACTGATGATCATTTGCAG..................................................2511.001.00-------------------1.00-----------------------------------------------------------------------------
..................................................................................................................................................................................................................TTGGGAAAGATCTCAGCAAT.........................2011.001.00----------------------------------------------------------------------------------1.00--------------
......................................................................................................GCCTGTGATGGTTTGGCTGAGGG..................................................................................................................................2311.003.00----1.00--------------------------------------------------------------------------------------------
.....................................................................................................TGCCTGTGATGGTTTGGCTGACTG..................................................................................................................................241.000.001.00------------------------------------------------------------------------------------------------
....................................................................................................................................TTGTGTTGGAGGTTATGGTAA......................................................................................................2111.001.00----------------------------------1.00--------------------------------------------------------------
......................................................................................................................CTGAGTGGAATTGGTTG........................................................................................................................1720.500.50---------------------------------0.50---------------------------------------------------------------
.........................................................................................................................................................................................................................................TTTGCCAAGCTGGAGAA.....1730.330.33------------------------------------------------------------------------------------------------0.33
......................................................................................................................................GTGTTGGAGGTTATG..........................................................................................................1550.200.20----------------------------------0.20--------------------------------------------------------------

Antisense strand
CCGGCTCTGCACGCAGCCCGACAGTGCAGTGAATTTACCCTCATGGCCAGGTGAGTTGAGAGGGGCGTTGTGGTGGGGTGATACAGTGTCTTAAGTATATCTGCCTGTGATGGTTTGGCTGAGTGGAATTGGTTGTGTTGGAGGTTATGGTAACAGCCTCTTTCCTGCCCTTTACCACAACCTTCTCACTGATGATCATTTGCAGGCGCATTGGGAAAGATCTCAGCAATACATTTGCCAAGCTGGAGAAGCTAA
....................................................................................................((((..(((((.(((......(((((((..(((((((.((((((.((.((.............)))).)))))).)))))))))).))))))).)))))..))))..................................................
................................................................................................97..........................................................................................................205................................................
SizePerfect hitTotal NormPerfect NormSRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)		SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR402766(SRX117949)
source: ES PGK female cells. (ESC)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)		SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		GSM314553(GSM314553)
ESC dcr (Illumina). (ESC)		SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		mjTestesWT1()
Testes Data. (testes)		SRR073954(GSM629280)
total RNA. (blood)		SRR390297(GSM849855)
cell line: NIH-3T3cell type: fibroblastip ant. (fibroblast)		SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)		SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)		SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)		mjLiverWT1()
Liver Data. (liver)		mjTestesKO6()
Testes Data. (Zcchc11 testes)		SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		mjTestesWT3()
Testes Data. (testes)		SRR014232(GSM319956)
16.5 dpc MILI. (mili testes)		SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)		SRR023850(GSM307159)
ZHBT-c40hsmallrna_rep1. (cell line)		SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)		mjTestesKO7()
Testes Data. (Zcchc11 testes)		SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)		SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)		SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR059766(GSM562828)
DN3_Drosha. (thymus)		SRR059765(GSM562827)
DN3_control. (thymus)		SRR014229(GSM319953)
10 dpp MILI. (mili testes)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR014231(GSM319955)
16.5 dpc total. (testes)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR059774(GSM562836)
MEF_control. (MEF)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)		SRR059767(GSM562829)
DN3_Dicer. (thymus)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		GSM475279(GSM475279)
Miwi-IP. (miwi testes)		GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)		SRR037926(GSM510464)
e9p5_rep4. (embryo)		SRR028730(GSM400967)
Tdrd1-associated. (tdrd1 testes)		GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)		SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)		SRR037921(GSM510459)
e12p5_rep3. (embryo)		SRR059768(GSM562830)
Treg_control. (spleen)		GSM361408(GSM361408)
WholeCerebellum_P6_wt_rep1. (brain)		SRR042454(GSM539846)
mouse germinal center B cells (lymph node) [09-002]. (b cell)		Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)		GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)		SRR073955(GSM629281)
total RNA. (blood)		SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR023849(GSM307158)
NPCsmallrna_rep1. (cell line)		SRR077866(GSM637803)
18-30 nt small RNAs. (liver)		SRR402761(SRX117944)
source: ES E14 male cells. (ESC)		SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR037923(GSM510461)
e9p5_rep1. (embryo)		SRR014230(GSM319954)
10 dpp Dnmt3L-KO MILI. (mili testes)		SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)		SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)		GSM475280(GSM475280)
Mili-IP. (mili testes)		SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)		SRR402762(SRX117945)
source: ES E14 male cells. (ESC)		SRR391847(GSM852142)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)		SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)		SRR037920(GSM510458)
e12p5_rep2. (embryo)		SRR059770(GSM562832)
Treg_Dicer. (spleen)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		mjLiverKO3()
Liver Data. (Zcchc11 liver)		SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)		GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)		SRR038743(GSM527278)
small RNA-Seq. (dicer brain)
................................................................................................................................................................................ACAACCTTCTCACTGATTGG........................................................... 201.000.00----------------------------------------1.00--------------------------------------------------------
.........................................................................................................................................................................................TCACTGATGATCATTTGCAGA................................................. 211.000.00---------------------------------------------------------------1.00---------------------------------
................................................................................................................................................................................ACAACCTTCTCACTGATTGT........................................................... 201.000.00----------------------------------------1.00--------------------------------------------------------
...............................................................................................................................................................................CACAACCTTCTCACTGATGGT........................................................... 211.000.00----------------------------------------1.00--------------------------------------------------------
.....................................................................................................................................................................................................................GGAAAGATCTCAGCATGAG....................... 191.000.00-------------------------------------------------------1.00-----------------------------------------
............................................................AGGGGCGTTGTGGTGGGGTTGT............................................................................................................................................................................. 221.000.00-------------------------1.00-----------------------------------------------------------------------
......................................................................................................................................GTGTTGGAGGTTATGCCTC...................................................................................................... 1951.000.00------------------------------------------------------------------------------1.00------------------
........................................................................................................................................................................CCTTTACCACAACCTTCTC.................................................................... 1911.001.00-----------------------------------------------------------------1.00-------------------------------
...............................................................................................................................................................................CACAACCTTCTCACTGACTG............................................................ 201.000.00--------------------------------------------------------------------------------------------1.00----