ID: mmu-mir-6973b
GENE: Gfra4(3)
chr2:130866012-130866184-


(14)
AGO2.ip 		(34)
BRAIN 		(2)
DGCR8.mut 		(1)
EMBRYO 		(3)
ESC 		(1)
LUNG 		(6)
OTHER 		(3)
OTHER.mut 		(5)
PIWI.ip 		(1)
PIWI.mut 		(1)
SPLEEN 		(17)
TESTES 		(3)
TOTAL-RNA 		(1)
UTERUS

Sense strand
TGCAGCCATCAGTTCTGCAGGACCAGACTGCTGGGTGCTGTTTCCCGCGGGTAGGTATGGGGAGAGGACAGGGAGTTGACAGTTTCCGAATCCTTCCCATCTGTGCTCTCTTACCCTTCCTAGGCAAGGCACGAGTGGCCTGAGAAGAGCTGGAGGCAGAAACAGTCCTTGTT
...................................................((((...((((((((.(((((((.(((........))).))).......)))).)))))...)))..))))...................................................
..................................................51.............................................................................130.........................................
SizePerfect hitTotal NormPerfect NormSRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR206940(GSM723281)
other. (brain)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		mjTestesWT4()
Testes Data. (testes)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR206941(GSM723282)
other. (brain)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR206942(GSM723283)
other. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)		GSM261958(GSM261958)
oocytesmallRNA-24to30. (oocyte)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR073955(GSM629281)
total RNA. (blood)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR206939(GSM723280)
other. (brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)
.......................................................................................................TGCTCTCTTACCCTTCCTAGTTT...............................................23110.002.00--1.00----1.00---2.00---2.00----2.00---1.00----------1.00-------------------------------
.......................................................................................................TGCTCTCTTACCCTTCCTAGT.................................................2119.002.00---1.00---2.00-------------------------1.001.00-1.00--1.00-----------1.00----------1.00----
.......................................................................................................TGCTCTCTTACCCTTCCTAGTT................................................2219.002.00---1.00-------------2.00-1.00-------1.00----1.001.001.00-------------1.00------------------
..................................................GTAGGTATGGGGAGAGGACAG......................................................................................................2119.009.00-----1.006.00----------------------------1.00-----------------1.00-------------
.....................................................................................................TGTGCTCTCTTACCCTTCCTAGT.................................................238.000.00--2.00-1.00--1.00-------------------1.00----1.00--------1.00-----------------1.00-------
..................................................GTAGGTATGGGGAGAGGACAGGGA...................................................................................................2417.007.00-1.00-1.00------1.00---------------1.00--1.001.00-------1.00----------------------------
..................................................GTAGGTATGGGGAGAGGACA.......................................................................................................2016.006.00--1.00--1.00----------2.00---1.00-----------------------------------1.00----------
............................................................................................................................................TGAGAAGAGCTGGAGGCAGAAACAGTC......2715.005.00--------1.001.00-----------3.00---------------------------------------------
......................................................................................................GTGCTCTCTTACCCTTCCTAGT.................................................225.000.00----1.00--------------2.00-----1.00----------------1.00------------------------
.....................................................................................................TGTGCTCTCTTACCCTTCCTAGTT................................................245.000.00----4.00-----------1.00--------------------------------------------------
.......................................................................................................TGCTCTCTTACCCTTCCTAGA.................................................2115.002.00-------------------------------2.00-----2.00----------------------1.00------
..................................................GTAGGTATGGGGAGAGGACAGG.....................................................................................................2214.004.00-----1.00------------------1.001.00-------------------------------------1.00---
..................................................GTAGGTATGGGGAGAGGACAGGGAGTTGACAGTTTCCGAATCCTTCCCATCTGTGCTCTCTTACCCTTCCTAGT.................................................7414.003.004.00------------------------------------------------------------------
..................................................GTAGGTATGGGGAGAGGACAGGGAGTT................................................................................................2714.004.00-3.00--------1.00--------------------------------------------------------
..................................................GTAGGTATGGGGAGAGGACAGGGAGT.................................................................................................2614.004.00-2.00---------------------------1.00--------1.00----------------------------
..................................................GTAGGTATGGGGAGAGGACAGGGAGTTGACAGTTTCCGAATCCTTCCCATCTGTGCTCTCTTACCCTTCCTAG..................................................7313.003.003.00------------------------------------------------------------------
...................................................TAGGTATGGGGAGAGGACAGGGAGTTGACAGTTTCCGAATCCTTCCCATCTGTGCTCTCTTACCCTTCCTAGT.................................................733.000.003.00------------------------------------------------------------------
.............TCTGCAGGACCAGACTGCTGGGT.........................................................................................................................................2313.003.00----------------------3.00--------------------------------------------
..................................................GTAGGTATGGGGAGAGGACAGGGAG..................................................................................................2512.002.00-1.00------1.00----------------------------------------------------------
.......................................................................................................TGCTCTCTTACCCTTCCTAG..................................................2012.002.00---1.00-------1.00-------------------------------------------------------
..................................................GTAGGTATGGGGAGAGGACAGGGAAT.................................................................................................2612.007.00-----2.00-------------------------------------------------------------
..................................................GTAGGTATGGGGAGAGGACAGGG....................................................................................................2312.002.00----1.00--1.00-----------------------------------------------------------
............................................................................................................................................TGAGAAGAGCTGGAGGCAGAAACAGTCC.....2812.002.00----------2.00--------------------------------------------------------
..................................................GTAGGTATGGGGAGAGGAC........................................................................................................1912.002.00---1.00-----------1.00---------------------------------------------------
..................................................GTAGGTATGGGGAGAGGACAGA.....................................................................................................2212.009.00-----1.00----------------------------------1.00--------------------------
..................................................GTAGGTATGGGGAGAGGACAGGGATA.................................................................................................2612.007.00---------2.00---------------------------------------------------------
............................................................................................................................................TGAGAAGAGCTGGAGGCAGAAACAG........2512.002.00------------------------------1.00--------------1.00---------------------
...............................................................................................................TACCCTTCCTAGGCAAGGCACGAGTG....................................2611.001.00-------------------------------------------------1.00-----------------
....................................................................................................................................GAGTGGCCTGAGAAGAGCTGGAGGCAA..............271.000.00-----------------------1.00-------------------------------------------
..................................................GTAGGTATGGGGAGAGGACAGGAT...................................................................................................2411.004.00-----1.00-------------------------------------------------------------
...............................................................................................................................................GAAGAGCTGGAGGCAGAAACAGTCCTT...2711.001.00---1.00---------------------------------------------------------------
..................................................GTAGGTATGGGGAGAGGACAGGGAGTTG...............................................................................................2811.001.00----------------------------------------------1.00--------------------
..................................................GTAGGTATGGGGAGAGGACAGGGAT..................................................................................................2511.007.00------------1.00------------------------------------------------------
..................................................GTAGGTATGGGGAGAGGAT........................................................................................................191.000.00------------------------------------1.00------------------------------
............................TGCTGGGTGCTGTTTCCCGCGGGTAT.......................................................................................................................261.000.00------------------------------------------------------1.00------------
..................................................GTAGGTATGGGGAGAGGACAGGGAGTTGACAGTTTCCGAATCCTTCCCATCTGTGCTCTCTTACCCTTCCTAGA.................................................7411.003.001.00------------------------------------------------------------------
......................................................................................................GTGCTCTCTTACCCTTCCTAGTT................................................231.000.00----------------------------------------------------------------1.00--
..................................................GTAGGTATGGGGAGAGGAAGA......................................................................................................211.000.00-------------------------------------------------------1.00-----------
..................................................GTAGGTATGGGGAGAGGACAGGGT...................................................................................................2411.002.00-1.00-----------------------------------------------------------------
............................................................................................................................................TGAGAAGAGCTGGAGGCAGAAACAGT.......2611.001.00------------1.00------------------------------------------------------
..................................................GTAGGTATGGGGAGAGGACAGGGAGA.................................................................................................2611.002.00-1.00-----------------------------------------------------------------
.....................................................................................................................TCCTAGGCAAGGCACGAGTGGCCTGAG.............................2711.001.00--------------------------------------------------1.00----------------
..................................................GTAGGTATGGGGAGAGGACT.......................................................................................................2011.002.00------------------1.00------------------------------------------------
.....................................................................................................................TCCTAGGCAAGGCACGAGTGGCCTGAGC............................2811.001.00--------------1.00----------------------------------------------------
..................................................................................................ATCTGTGCTCTCTTACCCTTCCTAGGCA...............................................2811.001.00-------------------------------------------1.00-----------------------
..................................................GTAGGTATGGGGAGAGGACAGT.....................................................................................................2211.009.00-----------1.00-------------------------------------------------------
...................................................TAGGTATGGGGAGAGGACAGGGAGTTGACAGTTTCCGAATCCTTCCCATCTGTGCTCTCTTACCCTTCCTAGA.................................................731.000.001.00------------------------------------------------------------------
......................................................................................................GTGCTCTCTTACCCTTCCTAGA.................................................221.000.00--1.00----------------------------------------------------------------
.......................................................................................................TGCTCTCTTACCCTTCCTAGCT................................................2211.002.00-----------------1.00-------------------------------------------------
..........................................TCCCGCGGGTAGGTATGGGGAGAGGA.........................................................................................................2611.001.00--------1.00----------------------------------------------------------
.......................................................................................................TGCTCTCTTACCCTTCCTAGTCT...............................................2311.002.00------------------------1.00------------------------------------------
....................................................................................................................................GAGTGGCCTGAGAAGAGCTGG....................2111.001.00----------------------------1.00--------------------------------------
......................................................................................................GTGCTCTCTTACCCTTCCTCGT.................................................221.000.00-----------------------1.00-------------------------------------------
..................................................GTAGGTATGGGGAGAGGACAGGGAA..................................................................................................2511.007.00-1.00-----------------------------------------------------------------
.................................................................................................................................CACGAGTGGCCTGAGAAGAGCTGGAGGCA...............2911.001.00-----------------------1.00-------------------------------------------
............................................................................................................................................TGAGAAGAGCTGGAGGCAGAAA...........2211.001.00--------1.00----------------------------------------------------------
................................................................AGGACAGGGAGTTGAGTC...........................................................................................181.000.00----------------------------------------------------------1.00--------
...................................................TAGGTATGGGGAGAGGACAGGGAGT.................................................................................................2511.001.00----------------------------1.00--------------------------------------
...................GGACCAGACTGCTGGGTGC.......................................................................................................................................1911.001.00--1.00----------------------------------------------------------------
.......................................................................................................................................TGGCCTGAGAAGAGCAGAA...................191.000.00--------------------------1.00----------------------------------------
.......................................................................................................TGCTCTCTTACCCTTCCTATTTT...............................................231.000.00--1.00----------------------------------------------------------------
......................................TGTTTCCCGCGGGTAGGTATGGGGAGG............................................................................................................271.000.00--------------1.00----------------------------------------------------
...................................................................................................TCTGTGCTCTCTTACCCTTCCTAGGC................................................2611.001.00--------1.00----------------------------------------------------------
.......................................................................................................TGCTCTCTTACCCTTCCTAGTTA...............................................2311.002.00---1.00---------------------------------------------------------------
............................................................................................................................................TGAGAAGAGCTGGAGGCAGAAATAGT.......2611.001.00------------1.00------------------------------------------------------
...............................................................................................................TACCCTTCCTAGGCAAGGCACGAGTGGC..................................2811.001.00--------------1.00----------------------------------------------------
..................................................................GACAGGGAGTTGACAGTGGAA......................................................................................211.000.00----------------------------------------------------1.00--------------
..................................................GTAGGTATGGGGAGAGGACAGGGGGT.................................................................................................2611.002.00--------------------------------------------1.00----------------------
...................................................TAGGTATGGGGAGAGGACAGGGAGTT................................................................................................2611.001.00---------1.00---------------------------------------------------------
..................................................GTAGGTATGGGGAGAGGACAGGGAGTTT...............................................................................................2811.004.00---------1.00---------------------------------------------------------
..................................................GTAGGTATGGGGAGAGG..........................................................................................................1750.400.40-----------------------------------------------------------------0.40-
.....................................................................................................................................AGTGGCCTGAGAAGAG........................1680.120.12------------------------------------------------------------------0.12
..................................................GTAGGTATGGGGAGAG...........................................................................................................1690.110.11-------------------------0.11-----------------------------------------

Antisense strand
TGCAGCCATCAGTTCTGCAGGACCAGACTGCTGGGTGCTGTTTCCCGCGGGTAGGTATGGGGAGAGGACAGGGAGTTGACAGTTTCCGAATCCTTCCCATCTGTGCTCTCTTACCCTTCCTAGGCAAGGCACGAGTGGCCTGAGAAGAGCTGGAGGCAGAAACAGTCCTTGTT
...................................................((((...((((((((.(((((((.(((........))).))).......)))).)))))...)))..))))...................................................
..................................................51.............................................................................130.........................................
SizePerfect hitTotal NormPerfect NormSRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)		SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)		SRR038744(GSM527279)
small RNA-Seq. (brain)		SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)		SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)		SRR553582(SRX182788)
source: Brain. (Brain)		SRR402760(SRX117943)
source: ES E14 male cells. (ESC)		SRR306535(GSM750578)
19-24nt. (ago2 brain)		SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)		SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)		SRR306542(GSM750585)
19-24nt. (ago2 brain)		SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)		GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)		SRR014233(GSM319957)
16.5 dpc MIWI2. (miwi2 testes)		SRR306537(GSM750580)
19-24nt. (ago2 brain)		SRR206940(GSM723281)
other. (brain)		SRR306530(GSM750573)
19-24nt. (ago2 brain)		SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)		SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)		SRR306533(GSM750576)
19-24nt. (ago2 brain)		mjTestesWT4()
Testes Data. (testes)		SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)		SRR039610(GSM527274)
small RNA-Seq. (brain)		SRR306541(GSM750584)
19-24nt. (ago2 brain)		SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)		SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)		SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)		SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)		SRR034120(GSM466730)
Mili IP_Tdrd9-/- replicate1. (mili testes)		GSM510456(GSM510456)
newborn_rep12. (total RNA)		SRR206941(GSM723282)
other. (brain)		SRR306536(GSM750579)
19-24nt. (ago2 brain)		SRR306534(GSM750577)
19-24nt. (ago2 brain)		SRR206942(GSM723283)
other. (brain)		SRR306532(GSM750575)
19-24nt. (ago2 brain)		GSM510455(GSM510455)
newborn_rep11. (total RNA)		GSM509280(GSM509280)
small RNA cloning by length. (testes)		SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)		SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)		SRR306531(GSM750574)
19-24nt. (ago2 brain)		GSM510444(GSM510444)
brain_rep5. (brain)		SRR069810(GSM610966)
small RNA sequencing; sample 2. (testes)		GSM261958(GSM261958)
oocytesmallRNA-24to30. (oocyte)		SRR034121(GSM466731)
Mili IP_Tdrd9-/- replicate2. (mili testes)		SRR363956(GSM822758)
P14-WTSmall RNA Miwi IPread_length: 36. (testes)		SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)		SRR306540(GSM750583)
19-24nt. (ago2 brain)		SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)		SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)		SRR306543(GSM750586)
19-24nt. (ago2 brain)		SRR073955(GSM629281)
total RNA. (blood)		SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)		SRR014235(GSM319959)
2 dpp total. (testes)		SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)		SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)		SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)		SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)		GSM261957(GSM261957)
oocytesmallRNA-19to24. (oocyte)		GSM510454(GSM510454)
newborn_rep10. (total RNA)		SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)		SRR306529(GSM750572)
19-24nt. (ago2 brain)		SRR206939(GSM723280)
other. (brain)		SRR038741(GSM527276)
small RNA-Seq. (brain)		SRR306544(GSM750587)
19-24nt. (ago2 brain)		SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)
...............................................CGGGTAGGTATGGGGAA............................................................................................................. 172.000.00-------------2.00-----------------------------------------------------
.......................CAGACTGCTGGGTGCTCTTT.................................................................................................................................. 201.000.00------------------1.00------------------------------------------------
.......................CAGACTGCTGGGTGCTCGT................................................................................................................................... 191.000.00------------------1.00------------------------------------------------
..............................................GCGGGTAGGTATGGGGA.............................................................................................................. 171.000.00-------------1.00-----------------------------------------------------
....................GACCAGACTGCTGGGTGCT...................................................................................................................................... 1911.001.00-------------------------------------------------------------1.00-----
..............................CTGGGTGCTGTTTCCCGAA............................................................................................................................ 191.000.00---------------------------------------------------------1.00---------
....................................................................................TCCGAATCCTTCCCATAC....................................................................... 181.000.00-----------------------------------------------1.00-------------------
..CAGCCATCAGTTCTGC........................................................................................................................................................... 1640.250.25---------------------------------------0.25---------------------------