ID: mmu-mir-6969
GENE: Clps(2)
chr17:28695336-28695755-


(1)
AGO.mut
(2)
AGO2.ip
(1)
B-CELL
(9)
BRAIN
(1)
CELL-LINE
(2)
EMBRYO
(9)
ESC
(4)
LIVER
(4)
OTHER
(4)
OTHER.mut
(3)
PANCREAS
(1)
PIWI.ip
(7)
TESTES
(9)
TOTAL-RNA
(1)
UTERUS

Sense strand
TTGCCCGTTGCACACACAAGGCCATGGAGAACAGCGAGTGCTCCCCAAAGGTGTGTGCCCTGGAGTGGAGGGAGTGGGGGGGAGCATCTGGACATGCAATGTTGAAGGAGTGAGACAGGAGGTCTCAGGAGCTCATCCCATGACCCCACTTGACTTTCACAGTGACCCCTAGGTATGTGTGTGTTCCCATTCCACAGGGTAAATAGAGGCCCCTCTGTGCCATTAAGTTAGTGGGAGTATTGGAGAAGGCCTAATGCATGGTCCCCTGGTGAGGCAGTCAGGAACACCCTGGGAAGTACCAGACAGCCAGTTCCCAGCAGAGTAGGGAGCAAAAGATAACCAAGTGACTCTGTTGTTCCCATCTCTGCAGACCCTCTATGGGATCTACTACCGGTGTCCCTGTGAGCGGGGCCTGACCTG
............................................................................................................................................................................................................................................................................................................................((((((..((((((((.(((..((...))...))).))))))))..))))))....................................................
.....................................................................................................................................................................................................................................................................................................................310.........................................................370................................................
SizePerfect hitTotal NormPerfect NormSRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)
SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)
SRR042481(GSM539873)
mouse pancreatic tissue [09-002]. (pancreas)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR077866(GSM637803)
18-30 nt small RNAs. (liver)
SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)
SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)
mjTestesWT3()
Testes Data. (testes)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
GSM510456(GSM510456)
newborn_rep12. (total RNA)
SRR402760(SRX117943)
source: ES E14 male cells. (ESC)
SRR037910(GSM510447)
newborn_rep3. (total RNA)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjLiverKO1()
Liver Data. (Zcchc11 liver)
SRR402766(SRX117949)
source: ES PGK female cells. (ESC)
GSM510454(GSM510454)
newborn_rep10. (total RNA)
SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)
SRR037914(GSM510451)
newborn_rep7. (total RNA)
SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)
SRR306544(GSM750587)
19-24nt. (ago2 brain)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)
SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
mjTestesWT1()
Testes Data. (testes)
SRR037912(GSM510449)
newborn_rep5. (total RNA)
SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)
SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)
GSM510452(GSM510452)
newborn_rep8. (total RNA)
SRR037920(GSM510458)
e12p5_rep2. (embryo)
GSM510455(GSM510455)
newborn_rep11. (total RNA)
SRR073955(GSM629281)
total RNA. (blood)
GSM510450(GSM510450)
newborn_rep6. (total RNA)
SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)
SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)
mjLiverWT1()
Liver Data. (liver)
SRR402761(SRX117944)
source: ES E14 male cells. (ESC)
SRR037925(GSM510463)
e9p5_rep3. (embryo)
GSM510453(GSM510453)
newborn_rep9. (total RNA)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)
SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)
SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGT.................................................2111633.00632.00843.00625.0096.0017.0013.004.004.001.003.001.005.002.003.00-2.003.00--1.002.00-2.00--------1.00-1.00-1.001.00------1.00-1.00-----
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAG..................................................201632.00632.00324.00244.0053.004.00-1.001.001.00-----3.00---------------------------1.00--------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGA.................................................211367.00367.00217.00129.0016.002.001.001.00-------------------------------1.00------------
..........................................................................................................................................................................................................................................................................................................................CAGCAGAGTAGGGAGCAAAAGA....................................................................................221313.00313.00128.00171.009.00-1.001.001.00----1.00--------------------------1.00-----------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGTAA...............................................231207.00632.0079.00105.0021.00--1.00------1.00-------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGTA................................................221201.00632.0099.0088.0013.00-1.00---------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGTT................................................221157.00632.0090.0056.006.00-2.00---2.00--1.00--------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGAA................................................221148.00367.0088.0051.007.002.00----------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGAAA...............................................23189.00367.0047.0039.003.00-----------------------------------------------
...........................................................................................................................................................................................................................................................................................................................AGCAGAGTAGGGAGCAAAAGA....................................................................................21161.0061.0033.0024.004.00-----------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGTAG...............................................23151.00632.0019.0026.004.00--------------2.00--------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCATT.................................................21150.0012.0015.0021.0014.00-----------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGTTT...............................................23146.00632.0026.0020.00------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................CCAGCAGAGTAGGGAGCAAAAGA....................................................................................23146.0046.0015.0021.006.002.00-----2.00----------------------------------------
..........................................................................................................................................................................................................................................................................................................................CAGCAGAGTAGGGAGCAAAAG.....................................................................................21140.0040.0027.0013.00------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGTAT...............................................23137.00632.0014.0018.005.00-----------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGTTA...............................................23136.00632.0020.0016.00------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAT..................................................20118.0012.003.007.007.00-----------------------1.00-----------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGAT................................................22117.00367.0011.006.00------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................CAGCAGAGTAGGGAGCAAAAGAA...................................................................................23115.00313.007.007.001.00-----------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAA..................................................20113.0012.004.008.001.00-----------------------------------------------
...........................................................................................................................................................................................................................................................................................................................AGCAGAGTAGGGAGCAAAAG.....................................................................................20113.0013.006.007.00------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCA...................................................19112.0012.007.005.00------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................CAGCAGAGTAGGGAGCAAAA......................................................................................20112.0012.005.007.00------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................CCAGCAGAGTAGGGAGCAAAAG.....................................................................................22112.0012.002.009.00---1.00--------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCATTT................................................22111.0012.005.004.002.00-----------------------------------------------
.........................................................................................................................................................................................................................................................................................................................CCAGCAGAGTAGGGAGCAA........................................................................................19111.0011.005.003.001.001.00---1.00------------------------------------------
..........................................................................................................................................................................................................................................................................................................................CAGCAGAGTAGGGAGCAAAAGAT...................................................................................23110.0010.005.004.001.00-----------------------------------------------
...........................................................................................................................................................................................................................................................................................................................AGCAGAGTAGGGAGCAAAAGAT...................................................................................22110.0010.009.001.00------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGTAAA..............................................24110.00632.001.006.003.00-----------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGTAAT..............................................2419.00632.003.004.002.00-----------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGTC................................................2219.00632.004.003.001.00-1.00---------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGAAAA..............................................2419.00367.006.002.001.00-----------------------------------------------
..........................................................................................................................................................................................................................................................................................................................CAGCAGAGTAGGGAGCAAAAGAAA..................................................................................2418.00313.002.005.001.00-----------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGAG................................................2218.00367.006.002.00------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................CAGCAGAGTAGGGAGCAAA.......................................................................................1917.007.005.001.001.00-----------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCATTAA...............................................2317.0012.001.001.005.00-----------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGAAT...............................................2317.00367.004.002.001.00-----------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCATTA................................................2216.0012.00-4.002.00-----------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................CTGTTGTTCCCATCTCTGCAGT.................................................2216.001.00-4.00-2.00----------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGAAG...............................................2316.00367.002.003.001.00-----------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCATA.................................................2115.0012.002.001.002.00-----------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCACT.................................................2115.0012.001.004.00------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTTCAG..................................................205.000.00--5.00-----------------------------------------------
...........................................................................................................................................................................................................................................................................................................................AGCAGAGTAGGGAGCAAAAGAA...................................................................................2215.0061.001.004.00------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGAAAAA.............................................2515.00367.001.004.00------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGTTAA..............................................2415.00632.002.00-3.00-----------------------------------------------
........................................................................................................................................................................................................................................................................................................................CCCAGCAGAGTAGGGAGCAAAAGA....................................................................................2415.005.003.002.00------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTTCAT..................................................204.000.00--4.00-----------------------------------------------
........................................................................................................................................................................................................................................................................................................................CCCAGCAGAGTAGGGAGCAAAAG.....................................................................................2314.004.00-3.00----1.00-------------------------------------------
.........................................................................................................................................................................................................................................................................................................................CCAGCAGAGTAGGGAGCAAAA......................................................................................2114.004.002.002.00------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCCG..................................................204.000.001.001.002.00-----------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCCGT.................................................214.000.001.00-3.00-----------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCCTT.................................................214.000.00--4.00-----------------------------------------------
..........................................................................................................................................................................................................................................................................................................................CAGCAGAGTAGGGAGCAAAAGT....................................................................................2214.0040.002.002.00------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................GTTGTTCCCATCTCTGCAGTTT...............................................224.000.003.001.00------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................CAGCAGAGTAGGGAGCAA........................................................................................1813.003.00-3.00------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................CCAGCAGAGTAGGGAGCAAAAGAT...................................................................................2413.003.00-3.00------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGC.................................................2113.00632.002.001.00------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGTGA...............................................2313.00632.001.002.00------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................CAGCAGAGTAGGGAGCAAAAT.....................................................................................2113.0012.002.001.00------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAC..................................................2013.0012.002.001.00------------------------------------------------
...........ACACACAAGGCCATGGAGAACAGCG................................................................................................................................................................................................................................................................................................................................................................................................2513.003.00---------3.00----------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAAT.................................................2113.0012.002.00-1.00-----------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................CCGGTGTCCCTGTGAGCGG...........1913.003.003.00-------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGAGT...............................................2313.00367.002.001.00------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGTAGA..............................................2412.00632.00-2.00------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................CCAGCAGAGTAGGGAGCA.........................................................................................1812.002.001.001.00------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGAAAT..............................................2412.00367.00-2.00------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................CCAGCAGAGTAGGGAGCAAAAA.....................................................................................2212.004.00-2.00------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................GTTGTTCCCATCTCTGCAGTTTA..............................................232.000.002.00-------------------------------------------------
.........GCACACACAAGGCCATGGAGAACAGCGAGTGCTC.........................................................................................................................................................................................................................................................................................................................................................................................3412.002.002.00-------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................CCAGCAGAGTAGGGAGCAAAAGAAT..................................................................................2512.0046.00-2.00------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................AGCAGAGTAGGGAGCAAAAGAAA..................................................................................2312.0061.001.001.00------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................CCAGCAGAGTAGGGAGCAAAT......................................................................................2112.001.00-2.00------------------------------------------------
...........ACACACAAGGCCATGGAGAAC....................................................................................................................................................................................................................................................................................................................................................................................................2112.002.002.00-------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................TGACTCTGTTGTTCCCATCTCTGCAG..................................................2612.002.002.00-------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGGAA...............................................2312.00632.002.00-------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGTTTT..............................................2412.00632.001.001.00------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAAA.................................................2112.0012.001.00-1.00-----------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCATAAA...............................................2312.0012.001.001.00------------------------------------------------
....................GCCATGGAGAACAGCGAGTGCT..........................................................................................................................................................................................................................................................................................................................................................................................2212.002.002.00-------------------------------------------------
...........ACACACAAGGCCATGGAGA......................................................................................................................................................................................................................................................................................................................................................................................................1912.002.001.001.00------------------------------------------------
............................................................................................................................................................................................................................................................................................................................................................TCTGTTGTTCCCATCTCTGCAG..................................................2212.002.002.00-------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGG.................................................2112.00632.001.001.00------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCTGT.................................................212.000.001.00-1.00-----------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCACTT................................................2212.0012.001.00-1.00-----------------------------------------------
.....CGTTGCACACACAAGGCCATGGAGAACAGCGA...............................................................................................................................................................................................................................................................................................................................................................................................3212.002.001.001.00------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................TACTACCGGTGTCCCTGTGAG..............2112.002.00-2.00------------------------------------------------
................CAAGGCCATGGAGAACAGCGAGTGCT..........................................................................................................................................................................................................................................................................................................................................................................................2612.002.00-2.00------------------------------------------------
...............ACAAGGCCATGGAGAACA...................................................................................................................................................................................................................................................................................................................................................................................................1821.501.500.501.00------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGAAC...............................................2311.00367.00-1.00------------------------------------------------
....................................................................................................................................................................................................................................TAGTGGGAGTATTGGACAG.............................................................................................................................................................................191.000.00-----------------------------1.00--------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGAGA...............................................2311.00367.001.00-------------------------------------------------
.................................................................................................AATGTTGAAGGAGTGGTT.................................................................................................................................................................................................................................................................................................................181.000.00----------------------------------------1.00---------
........................................................................................................................................................................................................................................................................................................................CCCAGCAGAGTAGGGAGCAA........................................................................................2011.001.00-1.00------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGAC................................................2211.001.001.00-------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................CAGCAGAGTAGGGAGCAAAATA....................................................................................2211.0012.00--1.00-----------------------------------------------
..........................................................................................................................................................................................................................................................................................................................CAGCAGAGTAGGGAGCAAAAGAAG..................................................................................2411.00313.001.00-------------------------------------------------
................CAAGGCCATGGAGAACAGC.................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00-1.00------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGATA...............................................2311.00367.00--1.00-----------------------------------------------
..............................................................................................TGCAATGTTGAAGGAGTGAGACAGG.............................................................................................................................................................................................................................................................................................................2511.001.00----------------1.00---------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCCTAA................................................221.000.00--1.00-----------------------------------------------
.............................................................................................................................................GACCCCACTTGACTTAGGC....................................................................................................................................................................................................................................................................191.000.00------------------------1.00-------------------------
.............ACACAAGGCCATGGAGAACAGCGAGTGCT..........................................................................................................................................................................................................................................................................................................................................................................................2911.001.00-1.00------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................GTTGTTCCCATCTCTGCAGATT...............................................221.000.00-1.00------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................CAGCAGAGTAGGGAGCAAAAGACT..................................................................................2411.00313.00-1.00------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................AGCAGAGTAGGGAGCAAAAGATG..................................................................................2311.0010.00-1.00------------------------------------------------
................CAAGGCCATGGAGAACAG..................................................................................................................................................................................................................................................................................................................................................................................................1811.001.00-1.00------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGTAAC..............................................2411.00632.001.00-------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................CAGCAGAGTAGGGAGCAAAAGAAT..................................................................................2411.00313.00-1.00------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGATT...............................................2311.00367.00------1.00-------------------------------------------
...........................................................................................................................................................................................................................................................................................................................AGCAGAGTAGGGAGCAAAAGATC..................................................................................2311.0010.00-1.00------------------------------------------------
..............................................................................................TGCAATGTTGAAGGAGAA....................................................................................................................................................................................................................................................................................................................181.000.00------------------------------------1.00-------------
........................................................................................................................................................................................................................................................................................................................CCCAGCAGAGTAGGGAGCAAAAA.....................................................................................231.000.001.00-------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................CAGCAGAGTAGGGAGCAAAAAAG...................................................................................2311.0012.001.00-------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGTTG...............................................2311.00632.001.00-------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................CAGCAGAGTAGGGAGCAAAAA.....................................................................................2111.0012.00-1.00------------------------------------------------
.....CGTTGCACACACAAGGCCATGGAGAACA...................................................................................................................................................................................................................................................................................................................................................................................................2811.001.00-1.00------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGACT...............................................2311.001.00-1.00------------------------------------------------
..................................................................GGAGGGAGTGGGGGGCG.................................................................................................................................................................................................................................................................................................................................................171.000.00----------------------1.00---------------------------
..........................................................................................................................................................................................................................................................................................................................CAGCAGAGTAGGGAGCATT.......................................................................................191.000.00---------------------------1.00----------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCATTG................................................2211.0012.00-1.00------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................GTTGTTCCCATCTCTGCAGAT................................................211.000.00-1.00------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................CAGCAGAGTAGGGAGCAAAAGAG...................................................................................2311.00313.00-1.00------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................CAGCAGAGTAGGGAGCAAAAGC....................................................................................2211.0040.001.00-------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCCGAA................................................221.000.00--1.00-----------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................GTTGTTCCCATCTCTGCAGTT................................................211.000.001.00-------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCTT..................................................201.000.00--1.00-----------------------------------------------
..........................................................................................................................................................................................................................................................................................................................CAGCAGAGTAGGGAGCAAAAGAAGA.................................................................................2511.00313.001.00-------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGTG................................................2211.00632.001.00-------------------------------------------------
........TGCACACACAAGGCCATGGAGAACAGCGA...............................................................................................................................................................................................................................................................................................................................................................................................2911.001.00----------------------------1.00---------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGTGT...............................................2311.00632.001.00-------------------------------------------------
..................................................................................................................................................................................................................................................................................................................................................................GTTCCCATCTCTGCAGTAA...............................................191.000.00---------------------------------1.00----------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCCT..................................................201.000.00--1.00-----------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................GTTGTTCCCATCTCTGCAGTAT...............................................221.000.001.00-------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCACAA................................................2211.0012.00-1.00------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCCTGTGAGCGGGGC........1911.001.00--------------1.00-----------------------------------
..................AGGCCATGGAGAACAGCGA...............................................................................................................................................................................................................................................................................................................................................................................................1911.001.001.00-------------------------------------------------
...............ACAAGGCCATGGAGACTTC..................................................................................................................................................................................................................................................................................................................................................................................................191.000.00--------------------1.00-----------------------------
.............ACACAAGGCCATGGAGAACAGCG................................................................................................................................................................................................................................................................................................................................................................................................2311.001.001.00-------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................CCAGCAGAGTAGGGAGCAAAAT.....................................................................................2211.004.00--1.00-----------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................CTGTTGTTCCCATCTCTGCAG..................................................2111.001.00-1.00------------------------------------------------
.................AAGGCCATGGAGAACAGCGAGT.............................................................................................................................................................................................................................................................................................................................................................................................2211.001.00--1.00-----------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGAGTTT.............................................2511.00367.001.00-------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGTGTA..............................................2411.00632.00-1.00------------------------------------------------
............CACACAAGGCCATGGAGAACAGCG................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00-1.00------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................CCAGCAGAGTAGGGAGCAATT......................................................................................2111.0011.001.00-------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCATTAG...............................................2311.0012.00--1.00-----------------------------------------------
...........ACACACAAGGCCATGGAGAACAGCGAGTGCT..........................................................................................................................................................................................................................................................................................................................................................................................3111.001.00-1.00------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................CCAGCAGAGTAGGGAGCAAA.......................................................................................2011.001.00--1.00-----------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGAAAG..............................................2411.00367.00-1.00------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................GAGTAGGGAGCAAAAGAGCAG................................................................................211.000.00-------------------------1.00------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGATAAA.............................................2511.00367.00-1.00------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................CAGCAGAGTAGGGAGCAAAAGTT...................................................................................2311.0040.001.00-------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTTCCT..................................................201.000.00--1.00-----------------------------------------------
...............ACAAGGCCATGGAGACTT...................................................................................................................................................................................................................................................................................................................................................................................................181.000.00--------------------1.00-----------------------------
..............CACAAGGCCATGGAGAACAGCGA...............................................................................................................................................................................................................................................................................................................................................................................................2311.001.00-1.00------------------------------------------------
........TGCACACACAAGGCCATGGAGAAC....................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00-1.00------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................GTTGTTCCCATCTCTGCAGT.................................................201.000.001.00-------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCACTA................................................2211.0012.00--1.00-----------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGTTTC..............................................2411.00632.001.00-------------------------------------------------
..................AGGCCATGGAGAACAGCACA..............................................................................................................................................................................................................................................................................................................................................................................................201.000.00-1.00------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCATTTG...............................................2311.0012.00--1.00-----------------------------------------------
..........................................................................................................................................................................................................................................................................................................................CAGCAGAGTAGGGAGCAAAAGAGA..................................................................................2411.00313.00-1.00------------------------------------------------
.................AAGGCCATGGAGAACAGCG................................................................................................................................................................................................................................................................................................................................................................................................1911.001.001.00-------------------------------------------------
..........................................................................................................GGAGTGAGACAGGAGGTCTCAGGAGCT...............................................................................................................................................................................................................................................................................................2711.001.00------------------1.00-------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAGTAGT..............................................2411.00632.00-1.00------------------------------------------------
......................CATGGAGAACAGCGAGTGCTCCC.......................................................................................................................................................................................................................................................................................................................................................................................2311.001.001.00-------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................AGCAGAGTAGGGAGCAAAAGATAT.................................................................................241.000.00-1.00------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................GTTGTTCCCATCTCTGCAGTA................................................211.000.001.00-------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................CAGCAGAGTAGGGAGCAAAAAA....................................................................................2211.0012.00-1.00------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCAAGA................................................2211.0012.001.00-------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................CAGCAGAGTAGGGAGCAACAGA....................................................................................2211.003.001.00-------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................TACTACCGGTGTCCCTGTGAGCGGGGC........2711.001.00-------1.00------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCATTTT...............................................2311.0012.001.00-------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGCGG..................................................201.000.001.00-------------------------------------------------
............CACACAAGGCCATGGAGAACATC.................................................................................................................................................................................................................................................................................................................................................................................................2320.500.500.50-------------------------------------------------
.............ACACAAGGCCATGGAGAAC....................................................................................................................................................................................................................................................................................................................................................................................................1920.500.50-0.50------------------------------------------------
............CACACAAGGCCATGGAGAACA...................................................................................................................................................................................................................................................................................................................................................................................................2120.500.500.50-------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGGAGA.................................................2130.330.330.33-------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTG.....................................................1730.330.33-0.33------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGTAG..................................................2030.330.33-0.33------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGTAGT.................................................2130.330.330.33-------------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................TGTTGTTCCCATCTCTGAAGT.................................................2130.330.33--------0.33-----------------------------------------
...................................................................................................................................................................................................................................................................................................................................AGGGAGCAAAAGATAA.................................................................................1650.200.20---------------------------------------------0.20----

Antisense strand
TTGCCCGTTGCACACACAAGGCCATGGAGAACAGCGAGTGCTCCCCAAAGGTGTGTGCCCTGGAGTGGAGGGAGTGGGGGGGAGCATCTGGACATGCAATGTTGAAGGAGTGAGACAGGAGGTCTCAGGAGCTCATCCCATGACCCCACTTGACTTTCACAGTGACCCCTAGGTATGTGTGTGTTCCCATTCCACAGGGTAAATAGAGGCCCCTCTGTGCCATTAAGTTAGTGGGAGTATTGGAGAAGGCCTAATGCATGGTCCCCTGGTGAGGCAGTCAGGAACACCCTGGGAAGTACCAGACAGCCAGTTCCCAGCAGAGTAGGGAGCAAAAGATAACCAAGTGACTCTGTTGTTCCCATCTCTGCAGACCCTCTATGGGATCTACTACCGGTGTCCCTGTGAGCGGGGCCTGACCTG
............................................................................................................................................................................................................................................................................................................................((((((..((((((((.(((..((...))...))).))))))))..))))))....................................................
.....................................................................................................................................................................................................................................................................................................................310.........................................................370................................................
SizePerfect hitTotal NormPerfect NormSRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)
SRR065058(SRR065058)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)
SRR042481(GSM539873)
mouse pancreatic tissue [09-002]. (pancreas)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR279905(GSM689055)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR077866(GSM637803)
18-30 nt small RNAs. (liver)
SRR279903(GSM689053)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)
SRR279906(GSM689056)
cell type: mouse embryonic stem cellcell line. (ESC)
mjTestesWT3()
Testes Data. (testes)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
GSM510456(GSM510456)
newborn_rep12. (total RNA)
SRR402760(SRX117943)
source: ES E14 male cells. (ESC)
SRR037910(GSM510447)
newborn_rep3. (total RNA)
mjTestesKO8()
Testes Data. (Zcchc11 testes)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
mjLiverKO1()
Liver Data. (Zcchc11 liver)
SRR402766(SRX117949)
source: ES PGK female cells. (ESC)
GSM510454(GSM510454)
newborn_rep10. (total RNA)
SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)
SRR037914(GSM510451)
newborn_rep7. (total RNA)
SRR345205(SRX097266)
source: size fractionated RNA from mouse hipp. (brain)
SRR306544(GSM750587)
19-24nt. (ago2 brain)
SRR029038(GSM433290)
25dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)
SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
mjTestesWT1()
Testes Data. (testes)
SRR037912(GSM510449)
newborn_rep5. (total RNA)
SRR039153(GSM471930)
HL1_siSrf1_smallRNAseq. (muscle)
SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)
GSM510452(GSM510452)
newborn_rep8. (total RNA)
SRR037920(GSM510458)
e12p5_rep2. (embryo)
GSM510455(GSM510455)
newborn_rep11. (total RNA)
SRR073955(GSM629281)
total RNA. (blood)
GSM510450(GSM510450)
newborn_rep6. (total RNA)
SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)
SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)
mjLiverWT1()
Liver Data. (liver)
SRR402761(SRX117944)
source: ES E14 male cells. (ESC)
SRR037925(GSM510463)
e9p5_rep3. (embryo)
GSM510453(GSM510453)
newborn_rep9. (total RNA)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
SRR345201(SRX097262)
source: size fractionated RNA from mouse hipp. (brain)
SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)
SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)
....................................................................................................................................................................................................................................................................................................GAAGTACCAGACAGCCAGTTCCCAGCA..................................................................................................... 2712.002.00-------2.00------------------------------------------
.........................................................................................................AGGAGTGAGACAGGAGGTCTCAGGAGCTCA............................................................................................................................................................................................................................................................................................. 3011.001.00-------1.00------------------------------------------
......................................................................................................................GAGGTCTCAGGAGCTAACT........................................................................................................................................................................................................................................................................................... 191.000.00-------------------------------------------1.00------
...........................................................................................................................................................................GGTATGTGTGTGTTCCCATTCCACAGGGT............................................................................................................................................................................................................................ 2911.001.00----------------1.00---------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................CATCTCTGCAGACCCTCGG.......................................... 191.000.00---------------------------------------1.00----------
.......................................................................................................................................................................................................................................................GGCCTAATGCATGGTA............................................................................................................................................................. 161.000.00-----------------------1.00--------------------------
.......................................................................................................................................................................................................................................................................................................................................................................CATCTCTGCAGACCCTATG.......................................... 191.000.00-------------------------------1.00------------------
...........................................................................................................................................................TTCACAGTGACCCCTCC........................................................................................................................................................................................................................................................ 171.000.00--------1.00-----------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................TCTACTACCGGT......................... 1290.780.78----------------------0.11----------------------0.110.220.110.110.11