ID: mmu-mir-6936
GENE: Sirt7(1)
chr11:120486075-120486240-


(1)
AGO.mut
(4)
AGO1.ip
(13)
AGO2.ip
(1)
AGO3.ip
(9)
B-CELL
(34)
BRAIN
(4)
CELL-LINE
(2)
DCR.mut
(2)
DGCR8.mut
(13)
EMBRYO
(7)
ESC
(4)
FIBROBLAST
(1)
HEART
(3)
KIDNEY
(7)
LIVER
(1)
LUNG
(4)
LYMPH
(13)
OTHER
(4)
OTHER.mut
(2)
PIWI.ip
(2)
PIWI.mut
(3)
SKIN
(10)
SPLEEN
(15)
TESTES
(3)
THYMUS
(2)
TOTAL-RNA

Sense strand
AGCGGGTCCGGAGGCTGCGGGAGGAGCAGCAGCGGGAGCGCCTCCGCCAGGTGAGCCACTGCCGTGCCCGCGCTCGCGCCGGCGCGCGCGGTCGCTCACCCGCTGCTCGTCCGTAGGTGTCACGCATCCTGAGGAAGGCGGCTGCAGAGCGCAGCGCGGAGGAGGG
..................................................((((((.(((((((((((.(((....))).)))))).))))).))))))...................................................................
..................................................51...................................................104............................................................
SizePerfect hitTotal NormPerfect NormSRR394083(GSM855969)
background strain: C57BL6/SV129cell type: KRa. (cell line)
SRR059769(GSM562831)
Treg_Drosha. (spleen)
SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR059765(GSM562827)
DN3_control. (thymus)
SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)
SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)
SRR059770(GSM562832)
Treg_Dicer. (spleen)
GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)
SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)
SRR059767(GSM562829)
DN3_Dicer. (thymus)
SRR059771(GSM562833)
CD4_control. (spleen)
SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)
SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)
Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)
SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)
SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)
mjLiverKO1()
Liver Data. (Zcchc11 liver)
SRR306536(GSM750579)
19-24nt. (ago2 brain)
SRR038744(GSM527279)
small RNA-Seq. (brain)
SRR306535(GSM750578)
19-24nt. (ago2 brain)
SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)
SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)
SRR073954(GSM629280)
total RNA. (blood)
SRR037924(GSM510462)
e9p5_rep2. (embryo)
SRR306542(GSM750585)
19-24nt. (ago2 brain)
SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)
SRR059768(GSM562830)
Treg_control. (spleen)
SRR306541(GSM750584)
19-24nt. (ago2 brain)
SRR037928(GSM510466)
e7p5_rep2. (embryo)
SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)
SRR525238(SRA056111/SRX170314)
Second IgG control. (Blood)
SRR069834(GSM304914)
Analysis of small RNAs in murine neutrophils cultured in vitro by Solexa/Illumina genome analyzer. (blood)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR402760(SRX117943)
source: ES E14 male cells. (ESC)
SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)
SRR059775(GSM562837)
MEF_Drosha. (MEF)
SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)
SRR037920(GSM510458)
e12p5_rep2. (embryo)
SRR306532(GSM750575)
19-24nt. (ago2 brain)
SRR206942(GSM723283)
other. (brain)
SRR059772(GSM562834)
CD4_Drosha. (spleen)
SRR306533(GSM750576)
19-24nt. (ago2 brain)
SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)
SRR037929(GSM510467)
e7p5_rep3. (embryo)
SRR206941(GSM723282)
other. (brain)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)
SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)
SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)
SRR306534(GSM750577)
19-24nt. (ago2 brain)
SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)
Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
SRR059766(GSM562828)
DN3_Drosha. (thymus)
SRR077864(GSM637801)
18-30 nt small RNAs. (liver)
SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)
SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)
SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)
SRR206940(GSM723281)
other. (brain)
SRR306540(GSM750583)
19-24nt. (ago2 brain)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR037921(GSM510459)
e12p5_rep3. (embryo)
SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)
SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)
SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)
GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)
SRR037922(GSM510460)
e12p5_rep4. (embryo)
SRR525241(SRA056111/SRX170317)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)
GSM510453(GSM510453)
newborn_rep9. (total RNA)
SRR095853(SRX039174)
sequencing of miRNA from wild type and diseas. (heart)
SRR553582(SRX182788)
source: Brain. (Brain)
SRR306529(GSM750572)
19-24nt. (ago2 brain)
SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)
SRR525240(SRA056111/SRX170316)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR038743(GSM527278)
small RNA-Seq. (dicer brain)
SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)
SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)
SRR065048(SRR065048)
Tissue-specific Regulation of Mouse MicroRNA . (liver)
SRR059776(GSM562838)
MEF_Dicer. (MEF)
SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)
SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)
SRR402761(SRX117944)
source: ES E14 male cells. (ESC)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR077866(GSM637803)
18-30 nt small RNAs. (liver)
SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)
Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
SRR037925(GSM510463)
e9p5_rep3. (embryo)
SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)
SRR206939(GSM723280)
other. (brain)
SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)
SRR346415(SRX098256)
source: Testis. (Testes)
SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR306526(GSM750569)
19-24nt. (ago2 brain)
SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)
SRR037927(GSM510465)
e7p5_rep1. (embryo)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR039610(GSM527274)
small RNA-Seq. (brain)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
mjTestesWT3()
Testes Data. (testes)
SRR037909(GSM510446)
newborn_rep2. (total RNA)
SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)
SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)
SRR402766(SRX117949)
source: ES PGK female cells. (ESC)
SRR059774(GSM562836)
MEF_control. (MEF)
SRR553585(SRX182791)
source: Kidney. (Kidney)
GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)
GSM510444(GSM510444)
brain_rep5. (brain)
SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)
SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)
SRR306531(GSM750574)
19-24nt. (ago2 brain)
SRR037906(GSM510442)
brain_rep3. (brain)
SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)
SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)
SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR306544(GSM750587)
19-24nt. (ago2 brain)
..................................................GTGAGCCACTGCCGTGCCCGC...............................................................................................21148.0048.00-2.002.00--1.001.001.00-3.00---4.00---3.00--4.002.001.001.002.001.00----1.00--1.00------3.00----1.001.00----2.00-------1.001.00-1.00---1.00------1.00------1.00---1.00-1.00--------------------1.00--------1.00----1.00-----------
...............................................................................CGGCGCGCGCGGTCGCTCACC..................................................................21128.0028.00---1.002.001.00-1.00---1.001.00-2.00-1.00-2.00--1.001.00-1.00------1.00-2.00------------------1.00-----1.00------1.00-----1.00-----------------1.00---1.00-----1.00------------------1.00-----1.00--1.00-----
...............................................................................CGGCGCGCGCGGTCGCTCACCC.................................................................22122.0022.00-1.001.00-1.003.00-1.00-----1.00--1.00-2.00---1.00----1.00-----------2.00----------1.00--1.00---1.00---1.00--1.00-------------------------------------1.00---1.00--------------------------
..................................................GTGAGCCACTGCCGTGCCCGTT..............................................................................................22118.0011.0017.001.00-----------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGCCACTGCCGTGCCCGCT..............................................................................................22113.0048.00--1.002.00--1.00-------2.00-----------------1.00------------1.00--2.00------------1.00-----1.00---------------------------------------------------1.00-------------
...............................................................................CGGCGCGCGCGGTCGCTCACCCGT...............................................................24111.009.00-1.00-1.00-1.00---1.00---------------1.00---------------------------1.00-----------------1.00-------------1.00-------------------1.00-------1.00------------1.00------
..................................................GTGAGCCACTGCCGTGCCCG................................................................................................20111.0011.00-1.00-------1.00--1.00--------1.00----1.00--------1.00----------1.00--------------------------------1.00-1.00-1.00---------------------------------------1.00---------
...............................................................................CGGCGCGCGCGGTCGCTCACCCG................................................................2319.009.00--3.00-----------1.00------------1.00-------1.00--1.00-------------------------------1.00------------------------1.00-------------------------------------
..................................................GTGAGCCACTGCCGTGCCCGT...............................................................................................2118.0011.00-2.00--1.00-----------------1.001.00-------------------1.00---------------1.00----------------------1.00--------------------------------------------------
...............................................................................CGGCGCGCGCGGTCGCTCAC...................................................................2018.008.00----1.00------1.001.00--------------1.00------1.00------1.00----------------1.00---------1.00----------------------------------------------------------------
..................................................GTGAGCCACTGCCGTGCCCGA...............................................................................................2116.0011.00--1.00---3.00-----1.00-------------------1.00----------------------------------------------------------------------------------------------------
...............................................................................CGGCGCGCGCGGTCGCTCA....................................................................1916.006.00-------1.00-----------------1.00--------1.00--2.00---------------------------------------------------------------------------------------1.00-------
...............................................................................CGGCGCGCGCGGTCGCTCACCCGA...............................................................2415.009.00--1.00-3.00------------------1.00-------------------------------------------------------------------------------------------------------------
.................................................................................................................................TGAGGAAGGCGGCTGTAT...................184.000.00--------1.00------2.00---1.00-----------------------------------------------------------------------------------------------------------------
...............................................................................CGGCGCGCGCGGTCGCTCACCCA................................................................2314.0022.00-----1.00----------1.00-------------------------------------------------1.00----------1.00-------------------------------------------------------
...............................................................................CGGCGCGCGCGGTCGCTCACCT.................................................................2214.0028.00--1.00------------------------------------------------------1.00-------1.00---1.00---------------------------------------------------------------
...............................................................................CGGCGCGCGCGGTCGCTCACCCATT..............................................................2513.0022.00-----2.00-1.00-----------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGCCACTGCCGTGCCCGCTT.............................................................................................2313.0048.00-1.00--1.00-----------------------------------------------------------------------1.00--------------------------------------------------------
..................................................GTGAGCCACTGCCGTGCCCGCC..............................................................................................2213.0048.00-1.00-1.00---------1.00-----------------------------------------------------------------------------------------------------------------------
................................CGGGAGCGCCTCCGCCAG....................................................................................................................1813.003.00-----------------------------2.00----------------------------------------------------------------------1.00--------------------------------
...................................................TGAGCCACTGCCGTGCCCGC...............................................................................................2013.003.00------------------------------2.00----------------1.00-------------------------------------------------------------------------------------
.......................................................................................................................................AGGCGGCTGCAGAGCGCAGCGCGG.......2413.003.00------------------------------------3.00------------------------------------------------------------------------------------------------
...............................................................................CGGCGCGCGCGGTCGCTC.....................................................................1813.003.00-----------1.00-------------------1.00-----------------------------------------------------------------------1.00-----------------------------
...............................................................................CGGCGCGCGCGGTCGCTCACCCGTT..............................................................2513.009.00-2.00---------------------------1.00-------------------------------------------------------------------------------------------------------
.................................GGGAGCGCCTCCGCCAG....................................................................................................................1713.003.00--------------------------1.00-1.00---------------------------------------------1.00----------------------------------------------------------
................................................................................GGCGCGCGCGGTCGCTCACCCG................................................................2213.003.00----------1.00-------------------------------1.00---------------------------------------------1.00--------------------------------------------
................................................................................GGCGCGCGCGGTCGCTCAC...................................................................1913.003.00----------3.00--------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................TGAGGAAGGCGGCTGCAT...................183.000.00-------------------1.00------------------------1.00------------------------1.00---------------------------------------------------------------
...............................................................................CGGCGCGCGCGGTCGCTCACCCT................................................................2313.0022.00---1.00-1.00---1.00---------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGCCACTGCCGTGCCCGAA..............................................................................................2212.0011.00------1.00-------------------------1.00----------------------------------------------------------------------------------------------------
..................................................GTGAGCCACTGCCGTGCCCGCTAT............................................................................................2412.0048.00-------------------------------------------1.00-----------------------1.00-----------------------------------------------------------------
...............................................................................CGGCGCGCGCGGTCGCTCACCCGTA..............................................................2512.009.00-------1.00--------------------------------------------------------1.00--------------------------------------------------------------------
.................................................................................................................................TGAGGAAGGCGGCTGTTG...................182.000.00---------------1.00---1.00-----------------------------------------------------------------------------------------------------------------
................................................................................GGCGCGCGCGGTCGCTCACC..................................................................2012.002.00----------1.00------------------------------------1.00-------------------------------------------------------------------------------------
...............................................................................CGGCGCGCGCGGTCGCTCACCCTTT..............................................................2512.0022.00--------------------------------------------------------1.00-----1.00----------------------------------------------------------------------
.................................................................................................................................TGAGGAAGGCGGCTGTATA..................192.000.00---------------------------------------------------------------1.00----------------------------------1.00----------------------------------
.................................................................................................................TAGGTGTCACGCATCCTGAGGAAGGC...........................2612.002.00----------------2.00--------------------------------------------------------------------------------------------------------------------
...............................................................................CGGCGCGCGCGGTCGCTCACA..................................................................2112.008.00--1.00----------------------------1.00-----------------------------------------------------------------------------------------------------
.....GTCCGGAGGCTGCGG..................................................................................................................................................1531.331.33------------------------0.33------------------------------------------------0.33--------------------------------------------------------0.330.33-
..................................................GTGAGCCACTGCCGTGCGCGC...............................................................................................211.000.00----------------------------1.00--------------------------------------------------------------------------------------------------------
.................................................................................................................................TGAGGAAGGCGGCTGTTTG..................191.000.00-------------------1.00-----------------------------------------------------------------------------------------------------------------
.................................................................................GCGCGCGCGGTCGCTGCA...................................................................181.000.00--1.00----------------------------------------------------------------------------------------------------------------------------------
................................................AGGTGAGCCACTGCCGTGCCCGA...............................................................................................231.000.00--------------1.00----------------------------------------------------------------------------------------------------------------------
..................................................GTGAGCCACTGCCGTGCCCGCCAAT...........................................................................................2511.0048.00-----------1.00-------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGCCACTGCCGTGCCCGAAA.............................................................................................2311.0011.00--------------------------1.00----------------------------------------------------------------------------------------------------------
........CGGAGGCTGCGGGAGGAGCAGCA.......................................................................................................................................2311.001.00------------------------------------------------------------------------1.00------------------------------------------------------------
.................................................................................................................................TGAGGAAGGCGGCTGCTG...................181.000.00--------1.00----------------------------------------------------------------------------------------------------------------------------
.............................................................................................................TCCGTAGGTGTCACGCG........................................171.000.00------------1.00------------------------------------------------------------------------------------------------------------------------
...............................................................................CGGCGCGCGCGGTCGCTCAAAAA................................................................2311.006.00-----------1.00-------------------------------------------------------------------------------------------------------------------------
...............................................CAGGTGAGCCACTGCCGTGCCCGC...............................................................................................2411.001.00------------------------------------------------------------1.00------------------------------------------------------------------------
.GCGGGTCCGGAGGCTGCGGGAGGA.............................................................................................................................................2411.001.00-------------------------------------------------------1.00-----------------------------------------------------------------------------
...............................................................................CGGCGCGCGCGGTCGCTCACCCTAA..............................................................2511.0022.00---------------------------------------1.00---------------------------------------------------------------------------------------------
..................................................GTGAGCCACTGCCGTGCCCCTT..............................................................................................221.000.001.00------------------------------------------------------------------------------------------------------------------------------------
.GCGGGTCCGGAGGCTGCGGGAGGAG............................................................................................................................................2511.001.00---1.00---------------------------------------------------------------------------------------------------------------------------------
................................................................................GGCGCGCGCGGTCGCTCACCC.................................................................2111.001.00----------1.00--------------------------------------------------------------------------------------------------------------------------
....................................................................................CGCGCGGTCGCTCACCC.................................................................1711.001.00--------------------------------------------------------------------------------------------------------------------------1.00----------
................................................AGGTGAGCCACTGCCGTGCCCGTT..............................................................................................241.000.00---1.00---------------------------------------------------------------------------------------------------------------------------------
................................................................................GGCGCGCGCGGTCGCTCACCT.................................................................2111.002.00------------------------------------------------------------------------------------------------------------------------1.00------------
..................................................................................CGCGCGCGGTCGCTCACCT.................................................................191.000.00-------------------------------------1.00-----------------------------------------------------------------------------------------------
...............................................................................CGGCGCGCGCGGTCGCTCACCTTT...............................................................2411.0028.00-------1.00-----------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................TGAGGAAGGCGGCTGATT...................181.000.00--------------------------------------------1.00----------------------------------------------------------------------------------------
.......................GAGCAGCAGCGGGAGGACG............................................................................................................................191.000.00---------------1.00---------------------------------------------------------------------------------------------------------------------
.................................................................................GCGCGCGCGGTCGCTCACCC.................................................................2011.001.00-------------------------------------------------------------------------------------------------------------1.00-----------------------
.................................................................................................................................TGAGGAAGGCGGCTGAAA...................181.000.00-------------------------------------------------1.00-----------------------------------------------------------------------------------
..............................................................................................................................TCCTGAGGAAGGCGGCTGCAGAGCGCA.............2711.001.00------------------------------------------------------------------------------------------------------------------1.00------------------
...............................................................................CGGCGCGCGCGGTCGCTCACCCGAT..............................................................2511.009.00---------------------------------------------------------------------------------------------------------------------1.00---------------
...............................................................................CGGCGCGCGCGGTCGCTCACCCCTT..............................................................2511.0022.00------------------------------------------------------------------------------------------------------------1.00------------------------
...............................................................................................TCACCCGCTGCTCGTCCGTAGT.................................................221.000.00-------------------------------------------------------------------------------------------------1.00-----------------------------------
...........................................................................................................................GCATCCTGAGGAAGGCGGCTGCAGAGCG...............2811.001.00---------------------------------------------------------------------------------------1.00---------------------------------------------
...............................................................................CGGCGCGCGCGGTCGCTCAAC..................................................................2111.006.00--------1.00----------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGCCACTGCCGTGCCAT................................................................................................2011.001.00-1.00-----------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................TGAGGAAGGCGGCTGTTT...................181.000.00--------1.00----------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGCCACTGCCGTGCC..................................................................................................1811.001.00--------------------------------------------------------------------------------------------1.00----------------------------------------
.......CCGGAGGCTGCGGGAGGAGCAGCA.......................................................................................................................................2411.001.00------------------------------------------------------------------------1.00------------------------------------------------------------
..................................................GTGAGCCACTGCCGTGCCCGCAT.............................................................................................2311.0048.00---1.00---------------------------------------------------------------------------------------------------------------------------------
...................................................................................GCGCGCGGTCGCTCACCCT................................................................191.000.00----1.00--------------------------------------------------------------------------------------------------------------------------------
...............................................................................CGGCGCGCGCGGTCGCTCACCCCTAA.............................................................2611.0022.00-----------------------------------1.00-------------------------------------------------------------------------------------------------
.................................................................................GCGCGCGCGGTCGCTCACCCGT...............................................................221.000.00------------------------------------------1.00------------------------------------------------------------------------------------------
..................................................................................................................................GAGGAAGGCGGCTGCAGAGCGCA.............2311.001.00-----------------------------------------1.00-------------------------------------------------------------------------------------------
.................................................................................................................................TGAGGAAGGCGGCTGTGTG..................191.000.00--------1.00----------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGCCACTGCCGTGCCCGTAA.............................................................................................2311.0011.00------1.00------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................TCCTGAGGAAGGCGGCTGCAGAGCGCAG............2811.001.00--------------------------------------------------------------------1.00----------------------------------------------------------------
...............................................................................CGGCGCGCGCGGTCGCTCACCCTTTT.............................................................2611.0022.00-----------1.00-------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................TCCTGAGGAAGGCGGCTGCAGAGCGC..............2611.001.00--------------------------------------------------------------------------------------------------------------1.00----------------------
..................................................................................CGCGCGCGGTCGCTCACCCGCTGCTCGT........................................................2811.001.00------------------------------------------------------------------------------------------1.00------------------------------------------
.........................................................................................................................................GCGGCTGCAGAGCGCGGG...........181.000.00--------1.00----------------------------------------------------------------------------------------------------------------------------
................................................................................................................................CTGAGGAAGGCGGCTGCAGAGCG...............2311.001.00----------------------------------------------------------------------1.00--------------------------------------------------------------
.................................................................................................................................TGAGGAAGGCGGCTGACGG..................191.000.00------------------------------------------------------------------------------------------------1.00------------------------------------
.................................................................................................................................TGAGGAAGGCGGCTGAC....................171.000.00-------------------------------------------------1.00-----------------------------------------------------------------------------------
.......................................................................................................................................AGGCGGCTGCAGAGCGCAGCGCGGT......2511.003.00------------------------------------------------------1.00------------------------------------------------------------------------------
.........................................................................................................................................GCGGCTGCAGAGCGCAGCGCGGAGGA...2611.001.00-----------------1.00-------------------------------------------------------------------------------------------------------------------
..................................................GTGAGCCACTGCCGTGCCCGCTTT............................................................................................2411.0048.00---1.00---------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGCCACTGCCGTGCCCGAAC.............................................................................................2311.0011.00--------------------------------------------------------------------------------------------------------1.00----------------------------
..........................CAGCAGCGGGAGCGCCTCCGCCAG....................................................................................................................2411.001.00--------------------------------------1.00----------------------------------------------------------------------------------------------
.................................................................................................................................TGAGGAAGGCGGCTGCAGAGTTA..............231.000.00---------------------------------------------------------------------------1.00---------------------------------------------------------
....................................AGCGCCTCCGCCAGGTGAGCCACTGCCGTG....................................................................................................3011.001.00------------------------------------------1.00------------------------------------------------------------------------------------------
.........................................................................................................................................GCGGCTGCAGAGCGCGGCG..........191.000.00---------------------------------------------------------------1.00---------------------------------------------------------------------
...............................................................................CGGCGCGCGCGGTCGCTCACCA.................................................................2211.0028.00------------1.00------------------------------------------------------------------------------------------------------------------------
........CGGAGGCTGCGGGAGGAGCAGCAGC.....................................................................................................................................2511.001.00-------------------------------------------------------------------------------------------1.00-----------------------------------------
...............................................................................CGGCGCGCGCGGTCGCTCACACCA...............................................................2411.008.00----------------------------------1.00--------------------------------------------------------------------------------------------------
...............................................................................CGGCGCGCGCGGTCG........................................................................1511.001.00----------------------------------------------------------------------------------------------1.00--------------------------------------
..................................................GTGAGCCACTGCCGTGCCCAT...............................................................................................211.000.00-1.00-----------------------------------------------------------------------------------------------------------------------------------
...............................................................................CGGCGCGCGCGGTCGCTCACCCCAT..............................................................2511.0022.00-----------------------------------------------------------------------------------------------------1.00-------------------------------
................................................................................................................................CTGAGGAAGGCGGCTGCAGAGCGCAG............2611.001.00-------------------------------------------------------1.00-----------------------------------------------------------------------------
................................................................................GGCGCGCGCGGTCGCTCACCAT................................................................2211.002.00--1.00----------------------------------------------------------------------------------------------------------------------------------
..............................................................................CCGGCGCGCGCGGTCGCTCACCC.................................................................2311.001.00------------------------------------------------------------------------------1.00------------------------------------------------------
..................................................GTGAGCCACTGCCGTGCCCGCAA.............................................................................................2311.0048.00--------------------------------------------------1.00----------------------------------------------------------------------------------
..................................................GTGAGCCACTGCCGTGCCCGCTTAT...........................................................................................2511.0048.00--------------------------------------1.00----------------------------------------------------------------------------------------------
..............................................................................................................................TCCTGAGGAAGGCGGCTGCAGAGCGT..............261.000.00----------------------------------------------------------------------------------------------------------------1.00--------------------
.....GTCCGGAGGCTGCGGGAGGAGCAGCAGC.....................................................................................................................................2811.001.00---------------------------------------------------------------------------------------------------------------1.00---------------------
...............................................................................CGGCGCGCGCGGTCGCTCACT..................................................................2111.008.00-----------------------------------------1.00-------------------------------------------------------------------------------------------
......................................................................................................................GTCACGCATCCTGAGGAAG.............................1911.001.00--------------------------------------------------------1.00----------------------------------------------------------------------------
.....GTCCGGAGGCTGCGGATG...............................................................................................................................................1830.671.33-----------------0.33---------------------------------------------------------------------------------------------------------------0.33---
..............................................CCAGGTGAGCCACTGC........................................................................................................1620.500.50---------------0.50---------------------------------------------------------------------------------------------------------------------
........CGGAGGCTGCGGGAGGAG............................................................................................................................................1820.500.50--------------------------------------------------------------------------------------------------------------------------------0.50----
..................................................................................CGCGCGCGGTCGC.......................................................................1350.400.40-----------------------0.40-------------------------------------------------------------------------------------------------------------
.....GTCCGGAGGCTGCGGCTGA..............................................................................................................................................1930.331.33--------0.33----------------------------------------------------------------------------------------------------------------------------
.................................................................................GCGCGCGCGGTCG........................................................................1360.170.17--------0.17----------------------------------------------------------------------------------------------------------------------------

Antisense strand
AGCGGGTCCGGAGGCTGCGGGAGGAGCAGCAGCGGGAGCGCCTCCGCCAGGTGAGCCACTGCCGTGCCCGCGCTCGCGCCGGCGCGCGCGGTCGCTCACCCGCTGCTCGTCCGTAGGTGTCACGCATCCTGAGGAAGGCGGCTGCAGAGCGCAGCGCGGAGGAGGG
..................................................((((((.(((((((((((.(((....))).)))))).))))).))))))...................................................................
..................................................51...................................................104............................................................
SizePerfect hitTotal NormPerfect NormSRR394083(GSM855969)
background strain: C57BL6/SV129cell type: KRa. (cell line)
SRR059769(GSM562831)
Treg_Drosha. (spleen)
SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR059765(GSM562827)
DN3_control. (thymus)
SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)
SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)
SRR059770(GSM562832)
Treg_Dicer. (spleen)
GSM519104(GSM519104)
mouse_granulocyte_nuclei_smallRNAs. (cell line)
SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)
SRR059767(GSM562829)
DN3_Dicer. (thymus)
SRR059771(GSM562833)
CD4_control. (spleen)
SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)
SRR391850(GSM852145)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)
Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)
SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)
SRR345199(SRX097260)
source: size fractionated RNA from mouse hipp. (brain)
mjLiverKO1()
Liver Data. (Zcchc11 liver)
SRR306536(GSM750579)
19-24nt. (ago2 brain)
SRR038744(GSM527279)
small RNA-Seq. (brain)
SRR306535(GSM750578)
19-24nt. (ago2 brain)
SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)
SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)
SRR073954(GSM629280)
total RNA. (blood)
SRR037924(GSM510462)
e9p5_rep2. (embryo)
SRR306542(GSM750585)
19-24nt. (ago2 brain)
SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)
SRR059768(GSM562830)
Treg_control. (spleen)
SRR306541(GSM750584)
19-24nt. (ago2 brain)
SRR037928(GSM510466)
e7p5_rep2. (embryo)
SRR042487(GSM539879)
mouse BclXL B activated with LPS/IL4 [BalbC] [09-002]. (spleen)
SRR525238(SRA056111/SRX170314)
Second IgG control. (Blood)
SRR069834(GSM304914)
Analysis of small RNAs in murine neutrophils cultured in vitro by Solexa/Illumina genome analyzer. (blood)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR402760(SRX117943)
source: ES E14 male cells. (ESC)
SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)
SRR059775(GSM562837)
MEF_Drosha. (MEF)
SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)
SRR037920(GSM510458)
e12p5_rep2. (embryo)
SRR306532(GSM750575)
19-24nt. (ago2 brain)
SRR206942(GSM723283)
other. (brain)
SRR059772(GSM562834)
CD4_Drosha. (spleen)
SRR306533(GSM750576)
19-24nt. (ago2 brain)
SRR345204(SRX097265)
source: size fractionated RNA from mouse hipp. (brain)
SRR037929(GSM510467)
e7p5_rep3. (embryo)
SRR206941(GSM723282)
other. (brain)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR039184(GSM485324)
shLuc.1309 (+dox). (fibroblast)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR042488(GSM539880)
mouse BclXL germinal center B cells [BalbC] [09-002]. (B cell)
SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)
SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)
SRR306534(GSM750577)
19-24nt. (ago2 brain)
SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)
Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
SRR059766(GSM562828)
DN3_Drosha. (thymus)
SRR077864(GSM637801)
18-30 nt small RNAs. (liver)
SRR345198(SRX097259)
source: size fractionated RNA from mouse hipp. (brain)
SRR042457(GSM539849)
mouse mast cells [09-002]. (bone marrow)
SRR042447(GSM539839)
mouse mature B cells (spleen) replicate 2 [09-002]. (b cell)
SRR206940(GSM723281)
other. (brain)
SRR306540(GSM750583)
19-24nt. (ago2 brain)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR037921(GSM510459)
e12p5_rep3. (embryo)
SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)
SRR038745(GSM527280)
small RNA-Seq. (dgcr8 brain)
SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR346417(SRX098258)
Global profiling of miRNA and the hairpin pre. (Brain)
GSM314552(GSM314552)
ESC wild type (Illumina). (ESC)
SRR037922(GSM510460)
e12p5_rep4. (embryo)
SRR525241(SRA056111/SRX170317)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)
GSM510453(GSM510453)
newborn_rep9. (total RNA)
SRR095853(SRX039174)
sequencing of miRNA from wild type and diseas. (heart)
SRR553582(SRX182788)
source: Brain. (Brain)
SRR306529(GSM750572)
19-24nt. (ago2 brain)
SRR039185(GSM485325)
shLuc.1309;ROSA-rtTA (-dox). (fibroblast)
SRR525240(SRA056111/SRX170316)
Mus musculus domesticus miRNA sequencing. (ago1 Blood)
GSM509277(GSM509277)
small RNA cloning by length. (piwi testes)
SRR038743(GSM527278)
small RNA-Seq. (dicer brain)
SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)
SRR039183(GSM485323)
shLuc.1309 (-dox). (fibroblast)
SRR065048(SRR065048)
Tissue-specific Regulation of Mouse MicroRNA . (liver)
SRR059776(GSM562838)
MEF_Dicer. (MEF)
SRR042448(GSM539840)
mouse B cells activated in vitro with LPS/IL4 replicate 1 [09-002]. (b cell)
SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)
SRR402761(SRX117944)
source: ES E14 male cells. (ESC)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR077866(GSM637803)
18-30 nt small RNAs. (liver)
SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR345197(SRX097258)
source: size fractionated RNA from mouse hipp. (brain)
Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
SRR037925(GSM510463)
e9p5_rep3. (embryo)
SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)
SRR206939(GSM723280)
other. (brain)
SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)
SRR346415(SRX098256)
source: Testis. (Testes)
SRR042474(GSM539866)
mouse embryonic stem cells [09-002]. (ESC)
GSM509280(GSM509280)
small RNA cloning by length. (testes)
SRR306526(GSM750569)
19-24nt. (ago2 brain)
SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)
SRR037927(GSM510465)
e7p5_rep1. (embryo)
SRR028732(GSM400969)
Mili-Tdrd1 KO associated. (mili testes)
SRR039610(GSM527274)
small RNA-Seq. (brain)
SRR034119(GSM466729)
Mili IP_Tdrd9+/- replicate2. (mili testes)
SRR042480(GSM539872)
mouse kidney tissue [09-002]. (kidney)
SRR034118(GSM466728)
Mili IP_Tdrd9+/- replicate1. (mili testes)
mjTestesWT3()
Testes Data. (testes)
SRR037909(GSM510446)
newborn_rep2. (total RNA)
SRR042456(GSM539848)
mouse hematopoetic progenitor cells [09-002]. (bone marrow)
SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)
SRR402766(SRX117949)
source: ES PGK female cells. (ESC)
SRR059774(GSM562836)
MEF_control. (MEF)
SRR553585(SRX182791)
source: Kidney. (Kidney)
GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)
GSM510444(GSM510444)
brain_rep5. (brain)
SRR553602(SRX182808)
source: Sertoli cells. (Sertoli cells)
SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)
SRR306531(GSM750574)
19-24nt. (ago2 brain)
SRR037906(GSM510442)
brain_rep3. (brain)
SRR345207(SRX097268)
source: size fractionated RNA from mouse hipp. (brain)
SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)
SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR306544(GSM750587)
19-24nt. (ago2 brain)
.....................AGGAGCAGCAGCGGGTCTG.............................................................................................................................. 191.000.00----------------------------1.00--------------------------------------------------------------------------------------------------------
........................................................................................................GCTCGTCCGTAGGTGTCACGCATCCTGA.................................. 2811.001.00-------------------------------------------------------------------------------------------------------------------1.00-----------------
...................................GAGCGCCTCCGCCA..................................................................................................................... 1411.001.00---------------1.00---------------------------------------------------------------------------------------------------------------------
..........................................................................................GTCGCTCACCCGCTGCTCGTCCGTA................................................... 2511.001.00------------------------------------------------------1.00------------------------------------------------------------------------------
.....................................................................................................GCTGCTCGTCCGTAGGTGTCACGCA........................................ 2511.001.00----------------------------------------------------1.00--------------------------------------------------------------------------------
................................................................................GGCGCGCGCGGTC......................................................................... 1350.200.20------------------------------------------------------------------------------------------------------------------------------------0.20