ID: mmu-mir-6921
GENE: Srebf1(17)
chr11:60013990-60014186-


(1)
AGO.mut
(2)
AGO1.ip
(6)
AGO2.ip
(1)
AGO3.ip
(8)
B-CELL
(20)
BRAIN
(5)
CELL-LINE
(2)
DCR.mut
(1)
DGCR8.mut
(11)
EMBRYO
(6)
ESC
(2)
FIBROBLAST
(4)
HEART
(2)
KIDNEY
(17)
LIVER
(2)
LUNG
(5)
LYMPH
(13)
OTHER
(8)
OTHER.mut
(1)
OVARY
(2)
PANCREAS
(4)
SKIN
(6)
SPLEEN
(19)
TESTES
(1)
THYMUS
(2)
TOTAL-RNA
(3)
UTERUS

Sense strand
TGAGCAGCCTGCGGCGGTTGGCACAGAGCTTCCGGCCTGCTATGAGGAGGGTGAGTCCCACTGTTCTCACACTGAGGGGCATGAGGTAGGAAGCCGGGAGTGGGGGGACAGTAAATCTGAAACGGGTGACTACTCCTTGCCTCTCAGGTATTCCTACATGAGGCCACAGCTCGGCTGATGGCAGGAGCAAGTCCTGC
.......................................................................((((((((((...(((.....))).(((((((...........(((((...)))))..))))))).))))))))))..................................................
...................................................................68.............................................................................147................................................
SizePerfect hitTotal NormPerfect NormmjLiverWT2()
Liver Data. (liver)
mjLiverKO1()
Liver Data. (Zcchc11 liver)
SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)
SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)
SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)
mjLiverWT1()
Liver Data. (liver)
SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)
SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)
SRR206942(GSM723283)
other. (brain)
GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)
SRR346415(SRX098256)
source: Testis. (Testes)
Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)
SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)
SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)
mjTestesWT3()
Testes Data. (testes)
mjLiverWT3()
Liver Data. (liver)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
SRR402760(SRX117943)
source: ES E14 male cells. (ESC)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)
Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR206941(GSM723282)
other. (brain)
SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)
SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)
Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)
SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)
SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)
SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR206940(GSM723281)
other. (brain)
GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)
SRR059769(GSM562831)
Treg_Drosha. (spleen)
SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)
SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)
SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)
SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)
SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)
GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)
SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)
SRR037906(GSM510442)
brain_rep3. (brain)
SRR077864(GSM637801)
18-30 nt small RNAs. (liver)
SRR306541(GSM750584)
19-24nt. (ago2 brain)
SRR039610(GSM527274)
small RNA-Seq. (brain)
SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)
SRR037928(GSM510466)
e7p5_rep2. (embryo)
SRR042479(GSM539871)
mouse liver tissue [09-002]. (liver)
Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)
SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)
SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)
SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)
SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)
SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)
GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)
mjLiverKO3()
Liver Data. (Zcchc11 liver)
SRR077865(GSM637802)
18-30 nt small RNAs. (liver)
SRR553585(SRX182791)
source: Kidney. (Kidney)
SRR037921(GSM510459)
e12p5_rep3. (embryo)
SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)
SRR065047(SRR065047)
Tissue-specific Regulation of Mouse MicroRNA . (liver)
SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)
SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)
GSM510456(GSM510456)
newborn_rep12. (total RNA)
SRR038744(GSM527279)
small RNA-Seq. (brain)
SRR037914(GSM510451)
newborn_rep7. (total RNA)
SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR402766(SRX117949)
source: ES PGK female cells. (ESC)
SRR073955(GSM629281)
total RNA. (blood)
SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)
SRR306534(GSM750577)
19-24nt. (ago2 brain)
SRR029123(GSM416611)
NIH3T3. (cell line)
SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)
SRR037923(GSM510461)
e9p5_rep1. (embryo)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR306539(GSM750582)
19-24nt. (ago2 brain)
SRR206939(GSM723280)
other. (brain)
SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)
SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)
SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)
SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)
GSM509276(GSM509276)
small RNA cloning by length. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR060845(GSM561991)
total RNA. (brain)
SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)
SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)
SRR077866(GSM637803)
18-30 nt small RNAs. (liver)
SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR037907(GSM510443)
brain_rep4. (brain)
SRR042481(GSM539873)
mouse pancreatic tissue [09-002]. (pancreas)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR095855BC3(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)
SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)
SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)
SRR553586(SRX182792)
source: Testis. (testes)
SRR553584(SRX182790)
source: Heart. (Heart)
SRR525244(SRA056111/SRX170320)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)
GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)
SRR037922(GSM510460)
e12p5_rep4. (embryo)
SRR553582(SRX182788)
source: Brain. (Brain)
SRR037905(GSM510441)
brain_rep2. (brain)
SRR042476(GSM539868)
mouse heart tissue [09-002]. (heart)
SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)
SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
..............................................................................................................................TGACTACTCCTTGCCTCTCAGT.................................................221184.0012.0028.0017.0012.00-11.003.0014.00-6.006.004.004.003.00-4.00--1.005.00----3.001.003.004.002.001.002.001.004.003.00----3.002.001.00-1.002.00-----1.001.00---1.00-1.002.00-1.00-1.00---2.00-1.00-1.001.001.001.00--1.001.001.00-1.001.001.00----1.00----1.001.001.00------------1.00----1.001.00----1.001.00---1.00-1.00----1.00----
..............................................................................................................................TGACTACTCCTTGCCTCTCAGA.................................................22132.0012.00--2.00-1.002.003.00-1.001.001.001.001.00-1.00-3.001.001.00-1.00--1.00---1.001.00---1.00---------1.00-----1.00----1.00---2.00------------------------1.00------------1.00-----------------------------1.00-------
........................................................................TGAGGGGCATGAGGTAGGAAGC.......................................................................................................22123.0023.00---3.00----1.00----1.00---------------1.00---1.00--2.00--1.00-1.00--1.001.00-1.00-----------------1.00-1.00----1.001.00-------1.00--1.00--1.001.00------------------------------1.00-------------
........................................................................TGAGGGGCATGAGGTAGGAAG........................................................................................................21119.0019.00---2.00-2.00--1.00--1.00------------2.00--------------1.00---2.00-1.00--------1.00----1.001.00---------------------------------1.00---------1.00---1.00---------------1.00--------
.......................................................................CTGAGGGGCATGAGGTAGGAAG........................................................................................................22115.0015.00---7.00-1.00-------1.00----------------1.00-------------1.00-----1.00----------1.00----------------------------------------------------------1.00---------1.00--
..............................................................................................................................TGACTACTCCTTGCCTCTCAGC.................................................22112.0012.00--2.00-3.00---3.002.00-------------------------------1.00---------------------------------------------------1.00---------------------------------------
..............................................................................................................................TGACTACTCCTTGCCTCTCAG..................................................21112.0012.00----1.00----2.00--1.002.00---1.00----1.00-------------------------------------------1.00-----------------------------1.00----1.001.00------------------------------
..................................................GTGAGTCCCACTGTTCTCACACTGAGGGGCATGAGGTAGGAAGCCGGGAGTGGGGGGACAGTAAATCTGAAACGGGTGACTACTCCTTGCCTC......................................................9318.008.00-------8.00-----------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................ACATGAGGCCACAGCTCGGCT.....................2117.007.00---------------------4.00---2.00---1.00-------------------------------------------------------------------------------------------------------
.........................................................................................................................ACGGGTGACTACTCCTTGCCTCTCAG..................................................2616.006.00---------------6.00---------------------------------------------------------------------------------------------------------------------
..............................................................................................................................TGACTACTCCTTGCCTCTCA...................................................2015.005.00-2.002.00----------------------------------------------------1.00-----------------------------------------------------------------------------
..............................................................................................................................TGACTACTCCTTGCCTCTCACT.................................................2215.005.00-3.00-------1.00------------------------------------------------1.00--------------------------------------------------------------------------
............................................................................................................................GGTGACTACTCCTTGCCTCTC....................................................2115.005.00-------------------5.00-----------------------------------------------------------------------------------------------------------------
..............................................................................................................................TGACTACTCCTTGCCTCTCATT.................................................2214.005.00-----1.00-----------3.00-------------------------------------------------------------------------------------------------------------------
........................................................................TGAGGGGCATGAGGTAGGA..........................................................................................................1914.004.00---3.00---------------------------------------1.00-----------------------------------------------------------------------------------------
........................................................................TGAGGGGCATGAGGTAGGAA.........................................................................................................2014.004.00----1.00----1.00-------------1.00--------------------------1.00----------------------------------------------------------------------------------
........................................................................TGAGGGGCATGAGGTAGGAAGA.......................................................................................................2213.0019.00-----1.00--1.00-------------------------------1.00--------------------------------------------------------------------------------------------
......................................................................ACTGAGGGGCATGAGGTAGGAAGCCGGGAGTGGGGGGACAGTAAATCTGAAACGGGTGACTACTCCTTGCCTCTCAG..................................................7713.003.00-------3.00-----------------------------------------------------------------------------------------------------------------------------
........................................................................TGAGGGGCATGAGGTAGGAAGT.......................................................................................................2213.0019.00---1.00-1.00-----1.00-------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................TGACTACTCCTTGCCTCTCAT..................................................2113.005.00-------------1.00----------1.00-------------------------------------------1.00----------------------------------------------------------------
..............................................................................................................................TGACTACTCCTTGCCTCTCAGTA................................................2313.0012.00----------1.00-2.00------------------------------------------------------------------------------------------------------------------------
.................................GGCCTGCTATGAGGAGG...................................................................................................................................................1713.003.00--------------3.00----------------------------------------------------------------------------------------------------------------------
................................CGGCCTGCTATGAGGAGG...................................................................................................................................................1813.003.00------------------------1.00--------------------------------------1.00----------------------------------------------------------1.00----------
........................................................................TGAGGGGCATGAGGTAGGAAGAA......................................................................................................2313.0019.00----------------------1.00------------------------------------1.00--1.00----------------------------------------------------------------------
......................................................................ACTGAGGGGCATGAGGTAGGA..........................................................................................................2112.002.00--1.00--------------------------------------------------------------------------------------------------------------------------------1.00-
..............................................................................................................................TGACTACTCCTTGCCTCTCAAT.................................................2212.005.00---2.00---------------------------------------------------------------------------------------------------------------------------------
........................................................................TGAGGGGCATGAGGTAGGAAGCT......................................................................................................2312.0023.00-----------------------------------2.00-------------------------------------------------------------------------------------------------
........................................................................TGAGGGGCATGAGGTAGGAAGCC......................................................................................................2312.002.00----------------------2.00--------------------------------------------------------------------------------------------------------------
......................................................................ACTGAGGGGCATGAGGTA.............................................................................................................1812.002.00-----1.00----------------------------1.00--------------------------------------------------------------------------------------------------
........................................................................TGAGGGGCATGAGGTAGGAAGCA......................................................................................................2312.0023.00-----------------------------------------------1.00-----------------------------------------1.00-------------------------------------------
........................................................................TGAGGGGCATGAGGTAGGAAT........................................................................................................2112.004.00-------------1.00----------------------------------------------------------------------------------------------------1.00------------------
.......................................................................CTGAGGGGCATGAGGTAG............................................................................................................1822.002.00---------------------------------0.501.50--------------------------------------------------------------------------------------------------
.......................CAGAGCTTCCGGCCTGCTATGAGGAGG...................................................................................................................................................2712.002.00--------------------1.00-----------------------------------------1.00----------------------------------------------------------------------
..............................................................................................................................TGACTACTCCTTGCCTCT.....................................................1812.002.00-------------2.00-----------------------------------------------------------------------------------------------------------------------
......................ACAGAGCTTCCGGCCTGCTATGAGG......................................................................................................................................................2512.002.00-----1.00-------------------------------------------------------------------------------------------------------1.00-----------------------
.............................................................................................................................GTGACTACTCCTTGCCTCTCAGA.................................................232.000.00----------------------------------------------2.00--------------------------------------------------------------------------------------
...................GGCACAGAGCTTCCGGCCTGCT............................................................................................................................................................2212.002.00--------------------------1.00-1.00--------------------------------------------------------------------------------------------------------
.........................................................CCACTGTTCTCACACTGAGGGGCATGAGGTAGGAAGCCGGGAGTGGGGGGACAGTAAATCTGAAACGGGTGACTACTCCTTGCCTCTCAG..................................................9012.002.00-------2.00-----------------------------------------------------------------------------------------------------------------------------
..................................GCCTGCTATGAGGAGGGTA................................................................................................................................................191.000.00---------------------------1.00---------------------------------------------------------------------------------------------------------
............................................................................................................................GGTGACTACTCCTTGCCTCTCA...................................................2211.001.00-----------------------------------------------------------------------------------------------------------------1.00-------------------
..............................................................................................................................................................TGAGGCCACAGCTCGGCAA....................191.000.00------------------------------------------------1.00------------------------------------------------------------------------------------
.......................................................................................................................................................................AGCTCGGCTGATGGCAT.............171.000.00--------------------1.00----------------------------------------------------------------------------------------------------------------
........................................................................TGAGGGGCATGAGGTAGGAAGCAT.....................................................................................................2411.0023.00----------1.00--------------------------------------------------------------------------------------------------------------------------
........................................................................TGAGGGGCATGAGGTAGGAAGCAAAA...................................................................................................2611.0023.00-----------------------------------------------------------------------------------------------------------1.00-------------------------
......................ACAGAGCTTCCGGCCTGCTATGAG.......................................................................................................................................................2411.001.00------------------------------------1.00------------------------------------------------------------------------------------------------
.....................................................................................................................................................................ACAGCTCGGCTGATGGCAGG............2011.001.00--1.00----------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................TGACTACTCCTTGCCTCTTA...................................................2011.002.00----------1.00--------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................TGACTACTCCTTGCCTCTCAGTAA...............................................2411.0012.00--------------------------------------1.00----------------------------------------------------------------------------------------------
.......................................................................CTGAGGGGCATGAGGTAGGAAGCT......................................................................................................2411.001.00---------------------------------------------------------------------------------------------------1.00---------------------------------
.......................................................................CTGAGGGGCATGAGGTAGGAAGC.......................................................................................................2311.001.00---------------------------------1.00---------------------------------------------------------------------------------------------------
.......................................................................CTGAGGGGCATGAGGTAGGAAGTAT.....................................................................................................2511.0015.00----------------------------------------------------------------------------------------------------------------1.00--------------------
......................................................................ACTGAGGGGCATGAGGTAGGAA.........................................................................................................2211.001.00-------------------------------------------------------------------1.00-----------------------------------------------------------------
.......................................................................CTGAGGGGCATGAGGTAGGA..........................................................................................................2011.001.00------------------------------1.00------------------------------------------------------------------------------------------------------
..........................................................................................................................................................TACATGAGGCCACAGCTCGGCTGATGGCAA.............301.000.00---------------------------------------------------1.00---------------------------------------------------------------------------------
.............................................................................................................................................................ATGAGGCCACAGCTCGGCTGATT.................231.000.00---------------1.00---------------------------------------------------------------------------------------------------------------------
..............................................................................................................................TGACTACTCCTTGCCTCTCAGTAT...............................................2411.0012.00----------------------------------------1.00--------------------------------------------------------------------------------------------
..................................................GTGAGTCCCACTGTTCTCACACTGAGGGGCATGAGGTAGGAAGCCGGGAGTGGGGGGACAGTAAATCTGAAACGGGTGACTACTCCTTGCCTCT.....................................................9411.001.00-------1.00-----------------------------------------------------------------------------------------------------------------------------
................................................................................................................................ACTACTCCTTGCCTCTCAG..................................................1911.001.00----------------------------1.00--------------------------------------------------------------------------------------------------------
.......................................................................CTGAGGGGCATGAGGTAGG...........................................................................................................1911.001.00------------1.00------------------------------------------------------------------------------------------------------------------------
..........................................................................AGGGGCATGAGGTAGGAAGCCGT....................................................................................................231.000.00------------------------------1.00------------------------------------------------------------------------------------------------------
..............................................................................................................................................................TGAGGCCACAGCTCGGCTGATGGCAT.............261.000.00--------------------1.00----------------------------------------------------------------------------------------------------------------
........................................................................TGAGGGGCATGAGGTAGGAAGCCT.....................................................................................................2411.002.00----------------------------------------1.00--------------------------------------------------------------------------------------------
...............................................................................................................................GACTACTCCTTGCCTCTCA...................................................1911.001.00-----1.00-------------------------------------------------------------------------------------------------------------------------------
........................................................................TGAGGGGCATGAGGTAGGAAGCTA.....................................................................................................2411.0023.00--------------------------------------------1.00----------------------------------------------------------------------------------------
....................GCACAGAGCTTCCGGCCTGCTATGAGGAGG...................................................................................................................................................3011.001.00---------------------------------------------------1.00---------------------------------------------------------------------------------
.............................................................................................................................................................ATGAGGCCACAGCTCGGCTTATT.................2311.001.00---------------1.00---------------------------------------------------------------------------------------------------------------------
...............................................................................................................................GACTACTCCTTGCCTCTCATT.................................................2111.001.00------------------------------------------------------------------------------------------------------------------------------1.00------
........................................................................................................GGGACAGTAAATCTGAAACGGG.......................................................................2211.001.00----------------------------------------------------1.00--------------------------------------------------------------------------------
..............................................................................................................................TGACTACTCCTTGCCTCTCAGAAGA..............................................2511.0012.00---------------------------------------------------------------------1.00---------------------------------------------------------------
.......................................................................................................................................................................AGCTCGGCTGATGGCAGG............1811.001.00-----------1.00-------------------------------------------------------------------------------------------------------------------------
.................................GGCCTGCTATGAGGAGGGT.................................................................................................................................................1911.001.00-----------------------------------------------------------------1.00-------------------------------------------------------------------
...............................................................................................................................GACTACTCCTTGCCTCTCAGT.................................................211.000.00------------------------------------------------------1.00------------------------------------------------------------------------------
........................................................................TGAGGGGCATGAGGTAGGT..........................................................................................................191.000.00-----------------------------------1.00-------------------------------------------------------------------------------------------------
.............................................................................................................................................................ATGAGGCCACAGCTCGGCT.....................1911.001.00----------------------------------------------------------------------------------------------------------------------1.00--------------
........................................................................TGAGGGGCATGAGGTAGGAAGCTT.....................................................................................................2411.0023.00-----------------------------------------------1.00-------------------------------------------------------------------------------------
...........CGGCGGTTGGCACAGAGCTTCCGGC.................................................................................................................................................................2511.001.00----------------------------------------------------1.00--------------------------------------------------------------------------------
........................................................................TGAGGGGCATGAGGTAGGAAGCCAGT...................................................................................................2611.002.00----------------------------------1.00--------------------------------------------------------------------------------------------------
..............................................................................................CGGGAGTGGGGGGACGGT.....................................................................................181.000.00-----------------------------------------------------------------------------1.00-------------------------------------------------------
..........................................................................AGGGGCATGAGGTAGGAAGCCGTCT..................................................................................................251.000.00-------------------------------------------------------------1.00-----------------------------------------------------------------------
.......................................................................CTGAGGGGCATGAGGTAGGAA.........................................................................................................2111.001.00---------------------------------------------------------------------------------------------------------------------------------1.00---
..............................................................................................................................TGACTACTCCTTGCCTCTC....................................................1911.001.00----------------------1.00--------------------------------------------------------------------------------------------------------------
............................................................................................................................GGTGACTACTCCTTGCCTCTCT...................................................2211.005.00---------------------------------------------1.00---------------------------------------------------------------------------------------
..............................................................................................................................TGACTACTCCTTGCCTCTCAGTT................................................2311.0012.00----------------------------------------------------------------------------------------------------1.00--------------------------------
..................................GCCTGCTATGAGGAGG...................................................................................................................................................1611.001.00----------------------------------------------1.00--------------------------------------------------------------------------------------
........................................................................TGAGGGGCATGAGGTAGGAAAAA......................................................................................................2311.004.00-----1.00-------------------------------------------------------------------------------------------------------------------------------
..................................................GTGAGTCCCACTGTTCTCACACTGAGGGGCATGAGGTAGGAAGCCGGGAGTGGGGGGACAGTAAATCTGAAACGGA.......................................................................761.000.00-------1.00-----------------------------------------------------------------------------------------------------------------------------
........................................................................TGAGGGGCATGAGGTAGGAAGTTT.....................................................................................................2411.0019.00-----1.00-------------------------------------------------------------------------------------------------------------------------------
........................................................................TGAGGGGCATGAGGTAGGAAGAC......................................................................................................2311.0019.00----------1.00--------------------------------------------------------------------------------------------------------------------------
.......................................................................CTGAGGGGCATGAGGTAGGAAAAA......................................................................................................2411.001.00---------------------------------1.00---------------------------------------------------------------------------------------------------
.........................GAGCTTCCGGCCTGCTATGA........................................................................................................................................................2011.001.00--------------------------------------------------------------------------------------------------1.00----------------------------------
.............................TTCCGGCCTGCTATGAGGAGGGTATT..............................................................................................................................................261.000.00--------------------1.00----------------------------------------------------------------------------------------------------------------
........................................................................TGAGGGGCATGAGGTAGGCAG........................................................................................................211.000.00-----------------------------------------------------------------------------------1.00-------------------------------------------------
......................................................................ACTGAGGGGCATGAGGTAGGAT.........................................................................................................2211.002.00--------------------------------------------------------------------------------------1.00----------------------------------------------
.....................CACAGAGCTTCCGGCCTGCTATGAGGA.....................................................................................................................................................2711.001.00-------------------------------------------------------------------------------------------------1.00-----------------------------------
.........................................ATGAGGAGGGTGAGTCCCACT.......................................................................................................................................2111.001.00---------------------1.00---------------------------------------------------------------------------------------------------------------
..............................................................................................................................TGACTACTCCTTGCCTCTCT...................................................2011.001.00----1.00--------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................TGACTACTCCTTGCCTCTCAC..................................................2111.005.00-------------------------------------------------1.00-----------------------------------------------------------------------------------
..............................................................................................................................TGACTACTCCTTGCCTCTCACC.................................................2211.005.00-------------------------------------------------------------------------------------------------------------------------------1.00-----
.................................................................................................................................CTACTCCTTGCCTCTCAGACC...............................................211.000.00--1.00----------------------------------------------------------------------------------------------------------------------------------
........................................................................TGAGGGGCATGAGGTAGGAAGCTAG....................................................................................................2511.0023.00----------------------------------------------------------------------------------------------------------1.00--------------------------
..................................................GTGAGTCCCACTGTTCTCACACTGAGGGG......................................................................................................................2911.001.00-------------------------------------------------------------------------------------------------------------------1.00-----------------
..................................................GTGAGTCCCACTGTTCTCACACTGAGGGGCATGAGGTAGGAAGCCGGGAGTGGGGGGACAGTAAATCTGAAACGGGTGACTACTCCTTGCCTA......................................................931.000.00-------1.00-----------------------------------------------------------------------------------------------------------------------------
......................ACAGAGCTTCCGGCCTGCTATGAGGAG....................................................................................................................................................2711.001.00---------------------------------------------------------------1.00---------------------------------------------------------------------
.....................CACAGAGCTTCCGGCCTGCT............................................................................................................................................................2011.001.00-----1.00-------------------------------------------------------------------------------------------------------------------------------
......................ACAGAGCTTCCGGCCTGCTATGAAA......................................................................................................................................................251.000.00-----------1.00-------------------------------------------------------------------------------------------------------------------------
......................................................................ACTGAGGGGCATGAGG...............................................................................................................1630.330.33-----------------------------------0.33-------------------------------------------------------------------------------------------------

Antisense strand
TGAGCAGCCTGCGGCGGTTGGCACAGAGCTTCCGGCCTGCTATGAGGAGGGTGAGTCCCACTGTTCTCACACTGAGGGGCATGAGGTAGGAAGCCGGGAGTGGGGGGACAGTAAATCTGAAACGGGTGACTACTCCTTGCCTCTCAGGTATTCCTACATGAGGCCACAGCTCGGCTGATGGCAGGAGCAAGTCCTGC
.......................................................................((((((((((...(((.....))).(((((((...........(((((...)))))..))))))).))))))))))..................................................
...................................................................68.............................................................................147................................................
SizePerfect hitTotal NormPerfect NormmjLiverWT2()
Liver Data. (liver)
mjLiverKO1()
Liver Data. (Zcchc11 liver)
SRR546155(SRX180174)
Global profiling of miRNA and the hairpin pre. (ago2 Neuroblastoma)
SRR279907(GSM689057)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR346422(SRX098264)
Global profiling of miRNA and the hairpin pre. (Muscle)
SRR346418(SRX098259)
Global profiling of miRNA and the hairpin pre. (Liver)
mjLiverWT1()
Liver Data. (liver)
SRR346421(SRX098263)
Global profiling of miRNA and the hairpin pre. (mixture)
SRR553583(SRX182789)
source: Cerebellum. (Cerebellum)
SRR206942(GSM723283)
other. (brain)
GSM640579(GSM640579)
small RNA in the liver with paternal Low pro. (liver)
SRR346415(SRX098256)
source: Testis. (Testes)
Ago1IP517(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
SRR042463(GSM539855)
mouse natural killer cells [09-002]. (spleen)
SRR685339(GSM1079783)
Small RNAs (15-50 nts in length) from immorta. (cell line)
SRR685340(GSM1079784)
Small RNAs (15-50 nts in length) from immorta. (dicer cell line)
mjTestesWT3()
Testes Data. (testes)
mjLiverWT3()
Liver Data. (liver)
SRR402762(SRX117945)
source: ES E14 male cells. (ESC)
SRR402760(SRX117943)
source: ES E14 male cells. (ESC)
SRR069809(GSM610965)
small RNA sequencing; sample 1. (testes)
SRR391853(GSM852148)
gender: femalegenotype/variation: ADAR2-/-/AD. (embryo)
SRR065059(SRR065059)
Tissue-specific Regulation of Mouse MicroRNA . (pancreas)
Ago1IP812(Rui)
Quantitative functions of Argonaute proteins . (ago1 skin)
SRR042445(GSM539837)
mouse immature B cells [09-002]. (b cell)
SRR391852(GSM852147)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR206941(GSM723282)
other. (brain)
SRR040489(GSM533912)
E18.5 Ago2 catalytically inactive LIVER small RNA. (ago2 liver)
SRR391848(GSM852143)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR391851(GSM852146)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR039186(GSM485326)
shLuc.1309;ROSA-rtTA (+dox). (fibroblast)
Ago3IP812(Rui)
Quantitative functions of Argonaute proteins . (ago3 skin)
SRR346413(SRX098254)
Global profiling of miRNA and the hairpin pre. (Heart)
SRR042458(GSM539850)
mouse basophil cells [09-002]. (b cell)
SRR042469(GSM539861)
mouse Th2 cells [09-002]. (lymph)
SRR346424(SRX098266)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
SRR391846(GSM852141)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR206940(GSM723281)
other. (brain)
GSM640580(GSM640580)
small RNA in the liver with paternal Low pro. (liver)
SRR059769(GSM562831)
Treg_Drosha. (spleen)
SRR042471(GSM539863)
mouse TFHS cells [09-002]. (spleen)
SRR279904(GSM689054)
cell type: mouse embryonic stem cellcell line. (ESC)
SRR346423(SRX098265)
Global profiling of miRNA and the hairpin pre. (Brain)
SRR248525(GSM733813)
cell type: Thy1- spermatogonial stem cellstra. (testes)
SRR042451(GSM539843)
mouse B cells activated in vitro with LPS/aIgD-Dextran [09-002]. (b cell)
SRR042452(GSM539844)
mouse B1 B cells [09-002]. (b cell)
SRR394084(GSM855970)
background strain: C57BL6/SV129cell type: KRa. (dicer cell line)
SRR032477(GSM485235)
sRNA_activation_deep_sequencing. (uterus)
SRR042473(GSM539865)
mouse nTreg cells [09-002]. (lymph)
GSM314557(GSM314557)
ESC dgcr8 (Illumina). (ESC)
SRR042468(GSM539860)
mouse Th1 cells [09-002]. (lymph)
SRR014231(GSM319955)
16.5 dpc total. (testes)
SRR346420(SRX098261)
Global profiling of miRNA and the hairpin pre. (Uterus)
SRR037906(GSM510442)
brain_rep3. (brain)
SRR077864(GSM637801)
18-30 nt small RNAs. (liver)
SRR306541(GSM750584)
19-24nt. (ago2 brain)
SRR039610(GSM527274)
small RNA-Seq. (brain)
SRR346419(SRX098260)
Global profiling of miRNA and the hairpin pre. (Lung)
SRR037928(GSM510466)
e7p5_rep2. (embryo)
SRR042479(GSM539871)
mouse liver tissue [09-002]. (liver)
Ago2IP517(Rui)
Quantitative functions of Argonaute proteins . (ago2 skin)
SRR039154(GSM471931)
HL1_siSrf2_smallRNAseq. (muscle)
SRR065052(SRR065052)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR248524(GSM733812)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR042465(GSM539857)
mouse CD4+ T cells (spleen) [09-002]. (spleen)
SRR040488(GSM533911)
E18.5 wild type LIVER small RNA. (liver)
SRR346416(SRX098257)
Global profiling of miRNA and the hairpin pre. (Kidney)
SRR032476(GSM485234)
sRNA_delayed_deep_sequencing. (uterus)
GSM640581(GSM640581)
small RNA in the liver with paternal control. (liver)
mjLiverKO3()
Liver Data. (Zcchc11 liver)
SRR077865(GSM637802)
18-30 nt small RNAs. (liver)
SRR553585(SRX182791)
source: Kidney. (Kidney)
SRR037921(GSM510459)
e12p5_rep3. (embryo)
SRR391845(GSM852140)
gender: femalegenotype/variation: wild typeti. (embryo)
SRR042472(GSM539864)
mouse iTreg cells [09-002]. (lymph)
SRR065047(SRR065047)
Tissue-specific Regulation of Mouse MicroRNA . (liver)
SRR038742(GSM527277)
small RNA-Seq. (dgcr8 brain)
SRR345196(SRX097257)
source: size fractionated RNA from mouse hipp. (brain)
GSM510456(GSM510456)
newborn_rep12. (total RNA)
SRR038744(GSM527279)
small RNA-Seq. (brain)
SRR037914(GSM510451)
newborn_rep7. (total RNA)
SRR065054(SRR065054)
Tissue-specific Regulation of Mouse MicroRNA . (jejunum)
SRR402766(SRX117949)
source: ES PGK female cells. (ESC)
SRR073955(GSM629281)
total RNA. (blood)
SRR042444(GSM539836)
mouse pre B cells [09-002]. (b cell)
SRR029042(GSM433294)
18.5dpc_hetero_tdrd1-KO. (tdrd1 testes)
SRR042467(GSM539859)
mouse T cells activated in vitro with Concanavalin A [09-002]. (spleen)
SRR306534(GSM750577)
19-24nt. (ago2 brain)
SRR029123(GSM416611)
NIH3T3. (cell line)
SRR042478(GSM539870)
mouse lung tissue [09-002]. (lung)
SRR037923(GSM510461)
e9p5_rep1. (embryo)
SRR029043(GSM433295)
18.5dpc_homo_tdrd1-KO. (tdrd1 testes)
SRR306539(GSM750582)
19-24nt. (ago2 brain)
SRR206939(GSM723280)
other. (brain)
SRR042466(GSM539858)
mouse CD8+ T cells (spleen) [09-002]. (spleen)
SRR042450(GSM539842)
mouse B cells activated in vitro with LPS/IL4 replicate 3 [09-002]. (b cell)
SRR042464(GSM539856)
mouse CD4+CD8+ T cells (thymus) [09-002]. (thymus)
mjTestesKO6()
Testes Data. (Zcchc11 testes)
mjTestesKO7()
Testes Data. (Zcchc11 testes)
SRR042475(GSM539867)
mouse embryonic fibroblast cells [09-002]. (fibroblast)
SRR042459(GSM539851)
mouse neutrophil cells replicate 1 [09-002]. (blood)
GSM509276(GSM509276)
small RNA cloning by length. (testes)
SRR248526(GSM733814)
cell type: Thy1- spermatogonial stem cellstra. (testes)
mjTestesWT2()
Testes Data. (testes)
SRR248527(GSM733815)
cell type: spermatogonial stem cell enriched . (testes)
SRR060845(GSM561991)
total RNA. (brain)
SRR042470(GSM539862)
mouse Th17 cells [09-002]. (lymph)
SRR042477(GSM539869)
mouse brain tissue [09-002]. (brain)
SRR077866(GSM637803)
18-30 nt small RNAs. (liver)
SRR042449(GSM539841)
mouse B cells activated in vitro with LPS/IL4 replicate 2 [09-002]. (b cell)
SRR029036(GSM433288)
18dpp_hetero_tdrd6-KO. (tdrd6 testes)
SRR037907(GSM510443)
brain_rep4. (brain)
SRR042481(GSM539873)
mouse pancreatic tissue [09-002]. (pancreas)
GSM509279(GSM509279)
MVH-/- E16.5 small RNA. (testes)
SRR345202(SRX097263)
source: size fractionated RNA from mouse hipp. (brain)
SRR248523(GSM733811)
cell type: Thy1+ spermatogonial stem cellstra. (testes)
SRR029037(GSM433289)
18dpp_homo_tdrd6-KO. (tdrd6 testes)
SRR095855BC3(SRX039178)
sequencing of miRNA from wild type and diseas. (heart)
SRR391849(GSM852144)
gender: femalegenotype/variation: ADAR2-/-tis. (embryo)
SRR042443(GSM539835)
mouse pro B cells [09-002]. (b cell)
SRR039152(GSM471929)
HL1_siNon_smallRNAseq. (muscle)
SRR023852(GSM307161)
ZHBT-c424hsmallrna_rep1. (cell line)
SRR553586(SRX182792)
source: Testis. (testes)
SRR553584(SRX182790)
source: Heart. (Heart)
SRR525244(SRA056111/SRX170320)
Mus musculus domesticus miRNA sequencing. (ago2 Blood)
GSM640578(GSM640578)
small RNA in the liver with paternal control. (liver)
SRR037922(GSM510460)
e12p5_rep4. (embryo)
SRR553582(SRX182788)
source: Brain. (Brain)
SRR037905(GSM510441)
brain_rep2. (brain)
SRR042476(GSM539868)
mouse heart tissue [09-002]. (heart)
SRR042486(GSM539878)
mouse ovaries [09-002]. (ovary)
SRR346425(SRX098267)
Global profiling of miRNA and the hairpin pre. (Neuroblastoma)
SRR345200(SRX097261)
source: size fractionated RNA from mouse hipp. (brain)
....................................................................................................................................CTCCTTGCCTCTCAGGTATTCCTACA....................................... 2613.003.00----------------3.00--------------------------------------------------------------------------------------------------------------------
......................................................GTCCCACTGTTCTCAGCTC............................................................................................................................ 191.000.00-------------------------------------------------------------------------------------------------------1.00-----------------------------
..............................TCCGGCCTGCTAT.......................................................................................................................................................... 1390.110.11------------------------------------------------------------------------------------------------------------------------------------0.11